These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1571 fasta sequence [TCCACCCAACGGCGGAGGCGACGACCCGATATTCCGATCCGCCGGCGCCGGCGCCGCCAGTCGCCGACTTTATCGGCCGTGCGGCTCACTCCACTCCGGGCGCCGCCGCCGCTGATCGCCGGCTTCATCAAGGATTCCTCCTCTCCTATTGGGAAGCTTCGGGCTCCTCTTTTTTTCCTCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGC-AGGAGGATCTGGATC-TGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAAGAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTCTCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACT-AAAAGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC-GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073948 [TCCACCCAACGGCGGAGGCGACGACCCGATATTCCGATCCGCCGGCGCCGGCGCCGCCAGTCGCCGACTTTATCGGCCGTGCGGCTCACTCCACTCCGGGCGCCGCCGCCGCTGATCGCCGGCTTCATCAAGGATTCCTCCTCTCCTATTGGGAAGCTTCGGGCTCCTCTTTTTTTCCTCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGC AGGAGGATCTGGATC TGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAAGAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTCTCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACT AAAAGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATG ] [+] EMBL AU070230 [ CGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGA CTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCANGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGNAAATTTTCATTACAGGGGCTACGATGCACATGGCAAGGAGGATCTGGATCTTGATC ] [-] EMBL CB655083 [ TAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAAGAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTCTCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACT AAAAGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAAATGGAGACTAATATATATGTTTT ] [+] EMBL AU092897 [ ggtgGCTACTAAAAAGCTCAGCACCTACGCACAATGGGAATNTACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACACCCTTAGGGGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184790 [ GGTTTCATTCATTTCGCATAAAATTTGAAAAGGGGCATGGGGTTNTNCCAAGTGGTAAAGTTANGTTTCTATTTTCCCTGCTGTTCTCGGCCATTATCCATCCTTAGGAGGAAAGGTGCTGCGTTAAAAAGGACTGCATTCCANCAAATTTCATNTNTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCNCAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAA ] [+] EMBL AU056326 [ GGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTNTTTTTAAAAAA ] consensusID : consensus_10906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [CACGTCTCCTCCTCTCCGACGCAGCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGA-CTCNGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTG-AAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAGGATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTG] [+] EMBL C28358 [CACGTCTCCTCCTCTCCGACGCAGCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGA CTCNGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTG AAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAG ] [+] EMBL CB655082 [ GTCTCCTCTTCTCCGACGCAGCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAGGATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10906#0 TCCACCCAACGGCGGAGGCGACGACCCGATATTCCGATCCGCCGGCGCCGGCGCCGCCAG 60 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 TCGCCGACTTTATCGGCCGTGCGGCTCACTCCACTCCGGGCGCCGCCGCCGCTGATCGCC 120 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 GGCTTCATCAAGGATTCCTCCTCTCCTATTGGGAAGCTTCGGGCTCCTCTTTTTTTCCTC 180 consensus_10906#1 --------------------------------CACGTCTC---CTCCTCTCCGACGCAGC 25 * * ** ******* * * consensus_10906#0 AAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGC 240 consensus_10906#1 AAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGC 85 ************************************************************ consensus_10906#0 GGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCC 300 consensus_10906#1 GGAGGCGGAGGCAGAGCGTGA-CTCNGAACCACCACCATGGGGACCTCTGCGCAGGAGCC 144 ********************* *** ********************************** consensus_10906#0 AAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCA 360 consensus_10906#1 AAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCA 204 ************************************************************ consensus_10906#0 GGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTC 420 consensus_10906#1 GGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTC 264 ************************************************************ consensus_10906#0 ATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGC 480 consensus_10906#1 ATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGC 324 ************************************************************ consensus_10906#0 GCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTC 540 consensus_10906#1 GCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTC 384 ************************************************************ consensus_10906#0 AGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAGG 600 consensus_10906#1 AGTGGCATCAATACCATTGAAA-TTTTCATTACAGGGGCTACGATGCACATGGCAGGAGG 443 ********************** ************************************* consensus_10906#0 ATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGA 660 consensus_10906#1 ATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGA 503 ************************************************************ consensus_10906#0 TGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTAC 720 consensus_10906#1 TGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTAC 563 ************************************************************ consensus_10906#0 ATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCT 780 consensus_10906#1 ATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCT 623 ************************************************************ consensus_10906#0 TAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGAC 840 consensus_10906#1 TAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGAC 683 ************************************************************ consensus_10906#0 TGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAA 900 consensus_10906#1 TGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTG---------- 733 ************************************************** consensus_10906#0 GAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTC 960 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 TCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACTAAAAGCTCAGCACCTACGCA 1020 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 CAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCA 1080 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 ACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATT 1140 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 TGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTT 1200 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 CTCGACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACA 1260 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 AATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGAT 1320 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 AAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAG 1380 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 TGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATG 1440 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 TGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACT 1500 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 TCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAAAAAAAAAAAAA 1560 consensus_10906#1 ------------------------------------------------------------ consensus_10906#0 AAAAAAAAAAA 1571 consensus_10906#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||