These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 779 fasta sequence [TTTTTTAAAAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC--TT------GTTACAAGGGCAGAAATGATGAGAATTAGCGT-AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG-ACGTTGCTCTATCGCCGTACAGAG-AAGCTATGCTGCTATACATGG-AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT-GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG-TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGGG] [-] EMBL BM038067 [TTTTTTAAAAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTGTTACA GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAAGGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGNATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGGTGATATAAGAATTTCTGGGTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAGATAGATTTGGGGGGATATGAATGAATGGgg ] [-] EMBL BM420730 [TTTTTTAACAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGG CAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC TTGTTACAGTTACAAGGGCAGAAATGATGAGAATTAGCGTAAAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAA GGGTTGGAANGGGCACGTTGCTCTATCGCCGTACAGAGCAAGCTATGCTGCTATACATGGCAACCGAGC ] [+] EMBL CB675473 [ AAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC TT GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGG ] [+] EMBL CB667579 [ ATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC TT GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGG ] [+] EMBL CB669662 [ AAATTTTCCTCCTTTAAAGGGGTATCTTGTGCATCTTGCAGATATTTGATGTGAGGCCGACACACCAAGTGATATACACGAATACCACCTTTTCCGGCTCCC TT GTTACAAGGGCAGAAATGATGAGAATTATCGT AAAAGGATAAACCGATCGCCAGAAAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAAAA AAGCTATGCTGCTATACATGG AACCAAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGCAGATTTCCCCCAGCTGCTGATATAAAAATTTCT GCTCCTCCAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAACTCAACAAAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGAATGCTGTCTCCAAAATCATTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGAGCTATTATTGATGCAAACAAACCTAct ] [+] EMBL CB678250 [ GAGGCCAACACACGAAGTGATATACACGAATACCACCTTTTCCGGTTCCC TT GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGG ] [-] EMBL CA753122 [ gGCTG GATACA GG AACCGAACGCTCAAAAACCACATACTGAATGCTTCATCATAAGCAAACTAGTTTTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCNACAGAG TAGTTTTGGAGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGGG] consensusID : consensus_10907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TTTTTTAAAAGGGGAATAAATTTTCCTCATTTGCCTGTGTTATCTTGTGCATCTTGCACATATTTGATTGTGAGGCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTTGTTACAGTTACAAGTGGCAGAAATGCATGAGAATTCAGCTGTAAAAGTGATAAACCGATCGCCAGAGAAGGCCAACCGTAAGTGGCAGAGCGAATCAAGTCACCTAAATCGCTAAAACCCCAATCCACACTCTATTCTTGTACAAGTGGTTTGGCCAAGGGACGTTGCTCTATCGCCGTACCAGAGAAGCTATGCTGCTATACATTGGAACCGAAGCGCTCAAAAACAACATACTGTATGCTTCACTCATAAAGCAAAACTAGTTCTCAGCGTCTGCATTAATTGCCTTTCACGGTAGAT] [-] EMBL BM420345 [TTTTTTAAAAGGGGAATAAATTTTCCTCATTTGCCTGTGTTATCTTGTGCATCTTGCACATATTTGATTGTGAGGCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTTGTTACAGTTACAAGTGGCAGAAATGCATGAGAATTCAGCTGTAAAAGTGATAAACCGATCGCCAGAGAAGGCCAACCGTAAGTGGCAGAGCGAATCAAGTCACCTAAATCGCTAAAACCCCAATCCACACTCTATTCTTGTACAAGTGGTTTGGCCAAGGGACGTTGCTCTATCGCCGTACCAGAGAAGCTATGCTGCTATACATTGGAACCGAAGCGCTCAAAAACAACATACTGTATGCTTCACTCATAAAGCAAAACTAGTTCTCAGCGTCTGCATTAATTGCCTTTCACGGTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10907#0 TTTTTTAAAAGGGGAATAAATTTTCCTCATTT-CCTGTGTTATCTTGTGCATCTTGCACA 59 consensus_10907#1 TTTTTTAAAAGGGGAATAAATTTTCCTCATTTGCCTGTGTTATCTTGTGCATCTTGCACA 60 ******************************** *************************** consensus_10907#0 TATTTGAT-GTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCC 118 consensus_10907#1 TATTTGATTGTGAGGC-AACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCC 119 ******** ******* ******************************************* consensus_10907#0 CTTGTTACAAG-------GGCAGAAATG-ATGAGAATT-AGC-GTAAAAG-GATAAACCG 167 consensus_10907#1 CTTGTTACAGTTACAAGTGGCAGAAATGCATGAGAATTCAGCTGTAAAAGTGATAAACCG 179 ********* ********** ********* *** ******* ********* consensus_10907#0 ATCGCCAGAGAAGGCAA--CGTAAGTGG-AGAGCGAATCAAGT-ACCTAAATCGCTAAAC 223 consensus_10907#1 ATCGCCAGAGAAGGCCAACCGTAAGTGGCAGAGCGAATCAAGTCACCTAAATCGCTAAAA 239 *************** * ********* ************** *************** consensus_10907#0 CCC--ATCCACACTCTATTCT-GTACAA-TGGTTTGGA-AAGGGACGTTGCTCTATCGCC 278 consensus_10907#1 CCCCAATCCACACTCTATTCTTGTACAAGTGGTTTGGCCAAGGGACGTTGCTCTATCGCC 299 *** **************** ****** ******** ********************* consensus_10907#0 GTAC-AGAGAAGCTATGCTGCTATACAT-GGAACCGA-GCGCTCAAAAACAACATACTGT 335 consensus_10907#1 GTACCAGAGAAGCTATGCTGCTATACATTGGAACCGAAGCGCTCAAAAACAACATACTGT 359 **** *********************** ******** ********************** consensus_10907#0 ATGCTTCA-TCATAAGC--AAACTAGTTCTCAGC-TCTGCATTAATTGCCTTTCACGGTA 391 consensus_10907#1 ATGCTTCACTCATAAAGCAAAACTAGTTCTCAGCGTCTGCATTAATTGCCTTTCACGGTA 419 ******** ****** *************** ************************* consensus_10907#0 GATTTCCCCAAGCTGCTGATATAAGAATTTCTGCTCCTCAAAGGTTAGATTTCTTAGAAT 451 consensus_10907#1 GAT--------------------------------------------------------- 422 *** consensus_10907#0 CTGTTCCAAGATTAGCTCAACAGAGTAGTTTTGGGGCGATATGAATGATTGGTGATATAT 511 consensus_10907#1 ------------------------------------------------------------ consensus_10907#0 GTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCC 571 consensus_10907#1 ------------------------------------------------------------ consensus_10907#0 AGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAA 631 consensus_10907#1 ------------------------------------------------------------ consensus_10907#0 ACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCAC 691 consensus_10907#1 ------------------------------------------------------------ consensus_10907#0 AGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATA 751 consensus_10907#1 ------------------------------------------------------------ consensus_10907#0 ATGTTCTGGCTTAAACATAGGACCAGGG 779 consensus_10907#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||