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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1203 fasta sequence
[CCAACCCATTTACCCCGAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC-GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT-GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA-GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA-CTAGTCTGTCCA-TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA-GTGGATTGTCTTGTATAAATACATACA-TTGCA-AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT-CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAATCAAGTTTGG]
[+] EMBL AK069800 [CCAACCCATTTACCCCGAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACT ]
[+] EMBL AK106195 [ GAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAATCAAGTTTGG]
[+] EMBL AU183203 [ GAATCTCACCCCCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGCAGGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGTGGGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCTCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGNTTTATGTNATAAATCGCAAAAGTTNTGAAGTTCCAATGATTGATTTCCATTTGAAATACTNTGGAAA ]
[+] EMBL AU173016 [ CCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACAT ]
[+] EMBL CA766728 [ ggggGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACTTAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGT ]
[+] EMBL AU173017 [ TTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAaaaa ]
[+] EMBL BQ908182 [ ATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACACGTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACACCTAGTCTGTCCACTTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAAC AGAGCCACGTGGATTGTCTTGTATAAATACATACACTTGCACAACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAaaaaaaaaa ]
consensusID : consensus_10908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[GANTAGGGGGATTTGGANAANAGATGCCAAANATTTTTGTTAGAAAANTGGGGGNCCATTGGAGTAGAGTTCTGGAGNTTNAAGNGTGTTGGATCGGGCTGTTTATCCTTCATCCTGCATTNAAGTCCNGCAATNATTTCAGGGAAAGTNAACAAGATTTGTGCGAGAAGCAGTCAATGACAGTAGTNTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGTTGGAAAATTATCCACTAGTCTGTCCATTGATCAGAAAACTGTCAGTAGATACCCAATGAATTGGCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACCAGCCAGTGCATTNTCTTGTATAAATACATACATTGCAAACGATTTAGCTATTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCTTGGCAGAATGGTACTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAAAAAAAAAAAAAAAAAA]
[-] EMBL AA753755 [GANTAGGGGGATTTGGANAANAGATGCCAAANATTTTTGTTAGAAAANTGGGGGNCCATTGGAGTAGAGTTCTGGAGNTTNAAGNGTGTTGGATCGGGCTGTTTATCCTTCATCCTGCATTNAAGTCCNGCAATNATTTCAGGGAAAGTNAACAAGATTTGTGCGAGAAGCAGTCAATGACAGTAGTNTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGTTGGAAAATTATCCACTAGTCTGTCCATTGATCAGAAAACTGTCAGTAGATACCCAATGAATTGGCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACCAGCCAGTGCATTNTCTTGTATAAATACATACATTGCAAACGATTTAGCTATTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCTTGGCAGAATGGTACTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10908#0 CCAACCCATTTACCCCGAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCC 60
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 ATGGCCGCCCGCCGGAGCCCCGCCGCGGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTC 120
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 TTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATG 180
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 CTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGTGGGACGCCAC 240
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 TGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTC 300
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 ACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCT 360
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 TGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAA 420
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 TACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTAT 480
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 GTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATAT 540
consensus_10908#1 ---------------------------GANTAGGGGGATTTGGANAANAGATGCCAA-AN 32
* * ***** * ** * ** *
consensus_10908#0 GTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTAT 600
consensus_10908#1 ATTTTTGTTAGAAAANT----GGGGGNCCATTGGAG-TAGAG--TTCTGGAGNTTNAAGN 85
** * ** *** * * ** * ** **** **** * ****** **
consensus_10908#0 GTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCA 660
consensus_10908#1 GTGTTG----GATC--GGGCTGTT-TATCCTTCATCCT-GCA-TTNAAGTCCNGCAATNA 136
****** **** ** **** ************* *** * * **** ***** *
consensus_10908#0 TCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACAGTAGTCTACCGGAA 720
consensus_10908#1 TTTCAGGGAAAGTNAACAAGATTTGTGCGAGAAGCAGTCAATGACAGTAGTNTACCGGAA 196
* ***** ***** *********************** ************ ********
consensus_10908#0 GGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACACTAGTC 780
consensus_10908#1 GGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGTTGGAAAATTATCCACTAGTC 256
*************************************** *********** ********
consensus_10908#0 TGTCCATTGATCAGAAAACTGTCAGTAGATACC----GAGTTGTCAGTCAAATTTCATGG 836
consensus_10908#1 TGTCCATTGATCAGAAAACTGTCAGTAGATACCCAATGAATTGGCAGTCAAATTTCATGG 316
********************************* ** *** ****************
consensus_10908#0 GCGAGCTTTCAACTTCAAACAAGAGCCAGTGGATTGTCTTGTATAAATACATACATTGCA 896
consensus_10908#1 GCGAGCTTTCAACTTCAAACCAG--CCAGTGCATTNTCTTGTATAAATACATACATTGCA 374
******************** ** ****** *** ************************
consensus_10908#0 AACGATTTAGCTATTAT---GACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCC 953
consensus_10908#1 AACGATTTAGCTATTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCC 434
***************** ****************************************
consensus_10908#0 CTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTG 1013
consensus_10908#1 CTTGGCAGAATGGTACTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTG 494
*************** ********************************************
consensus_10908#0 ATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTG 1073
consensus_10908#1 ATGTATTGCGTGATGATTTTGTCTGATGCAAAAAAAAAAAAAAAAAA------------- 541
******************************
consensus_10908#0 TGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGT 1133
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 ATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAA 1193
consensus_10908#1 ------------------------------------------------------------
consensus_10908#0 TCAAGTTTGG 1203
consensus_10908#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||