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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 895 fasta sequence
[ATCACCGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA-CCA-CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG-GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT-GTCATGAT-CTGAA-CT-CAAAGTATTAGCGATCTCA-CTACA-A-CGAAGAAATTGGCA-TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA-CACTGCTGCATCTTTTGT-GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAGCTGAA]
[+] EMBL AK061487 [ATCACCGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAA ]
[+] EMBL AK066393 [ CGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAA ]
[+] EMBL CB685830 [ CTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAA ]
[-] EMBL CB685831 [ GGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAGCTG ]
[+] EMBL CB681612 [ GCCAACGTGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACT ]
[+] EMBL BI799381 [ CCGGCGACCCACCGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGCGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGTCGTCATGATCCTGAACCTCCAAAGTATTAGCGATCTCAGCTACACAGCGAAGAAATTGGCACTTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACCAAGAGGATCCCGCTATAGTTATAGACTTATAGTTAACCCCTGCTGCATCTTTTGTCGCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAaaaaaa]
consensusID : consensus_10915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[TGCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCACCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAAGCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGNCGCCATCCAGAAGTACACCGCTCCATCGTCGCCCGCTGCTGAATCAGAGGAGCCATGACAGGAGGGATGATTCCACACAGGGTTGAGGTGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCATTCTATATAGGAGAGAGGATCATTAAATTGGTCAGCACAAAGAGGATGCCGTTTAGTTGAGGACTAGTAGTAACACTGATGGATTTTTGGGAGCAGACAACGGGNCCTTCTA]
[+] EMBL BE040666 [TGCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCACCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAAGCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGNCGCCATCCAGAAGTACACCGCTCCATCGTCGCCCGCTGCTGAATCAGAGGAGCCATGACAGGAGGGATGATTCCACACAGGGTTGAGGTGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCATTCTATATAGGAGAGAGGATCATTAAATTGGTCAGCACAAAGAGGATGCCGTTTAGTTGAGGACTAGTAGTAACACTGATGGATTTTTGGGAGCAGACAACGGGNCCTTCTA]
consensusID : consensus_10915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[GGAGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACNAGAACGGGGTGCTGCTGGANNCGTTCGCGACGCGGGACAAGGNNAGGATCATCGCCGCCATCNAGNNNTACACCGCNNNATCNNNGNNGCC]
[+] EMBL CF197396 [GGAGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACNAGAACGGGGTGCTGCTGGANNCGTTCGCGACGCGGGACAAGGNNAGGATCATCGCCGCCATCNAGNNNTACACCGCNNNATCNNNGNNGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10915#0 ATCACCGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTC 60
consensus_10915#1 ------------------------------------TGCTCCTCCGGCCGCCGCTCCCTC 24
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 CCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTC 120
consensus_10915#1 CCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTC 84
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 TCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAAC 180
consensus_10915#1 TCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAAC 144
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 GGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCG 240
consensus_10915#1 GGGTCGCTGCCGGGGCTCACCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCG 204
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 GTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCC 300
consensus_10915#1 GTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCC 264
consensus_10915#2 -----------------------GGAGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCC 37
* **********************************
consensus_10915#0 AAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAG 360
consensus_10915#1 AAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAG 324
consensus_10915#2 AAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAG 97
************************************************************
consensus_10915#0 TACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCTCCGTC 420
consensus_10915#1 TACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTC 384
consensus_10915#2 TACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTC 157
****************************************************** *****
consensus_10915#0 GTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGG 480
consensus_10915#1 GTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAAGCAGAGGTGGCAGACCGG 444
consensus_10915#2 GTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGG 217
***************************************** *****************
consensus_10915#0 CTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCG 540
consensus_10915#1 CTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCG 504
consensus_10915#2 CTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACNAGAACGGGGTGCTGCTGGANNCG 277
************************************ ******************* **
consensus_10915#0 TTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCG 600
consensus_10915#1 TTCGCGACGCGGGACAAGGAGAGGATCATCGNCGCCATCCAGAAGTACACCGCTCCATCG 564
consensus_10915#2 TTCGCGACGCGGGACAAGGNNAGGATCATCGCCGCCATCNAGNNNTACACCGCNNNATCN 337
******************* ********** ******* ** ******** ***
consensus_10915#0 TCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGT 660
consensus_10915#1 TCGCCCGCTGCTGAATCAGAGGAGCCATGACAGGAGGGATGATTCCACACAGGGTTGAGG 624
consensus_10915#2 NNGNNGCC---------------------------------------------------- 345
* *
consensus_10915#0 TGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCAT 720
consensus_10915#1 TGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCAT 684
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 TCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTAT 780
consensus_10915#1 TCTATATAGGAGAGAGGATCATTAAATTGGTCAGCACAAAGAGGATGCCGTT-TAGTTGA 743
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 AGACTTATAGTTAACACTGCTGCATCTTTTGTGCTACAGCACAATTGTACCATTCCTACG 840
consensus_10915#1 GGACTAGTAGT-AACACTGATGGATTTTTGGGA--GCAG-ACAACGGGNCC--TTCTA-- 795
consensus_10915#2 ------------------------------------------------------------
consensus_10915#0 GGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAGCTGAA 895
consensus_10915#1 -------------------------------------------------------
consensus_10915#2 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||