These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 933 fasta sequence [TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCGCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGAT-GAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCA-GTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCAT-GGGACAT-CCGAG-CGACA-CCGACGTTCTT-CTT-CCT-AAAGAAC-GGGGAGCAGG-TGGACAAGCTCGTCGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTAT----GTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC--TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA-TTA-TTGCCTGATT-TTACCCTGGTGAAAAAAAATCCGATGTATGTTGAGTGTGAACTGATACAGAACAATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA] [+] EMBL AK103756 [TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCGCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGAT GAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCA GTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCAT GGGACAT CCGAG CGACA CCGACGTTCTT CTT CCT AAAGAAC GGGGAGCAGG TGGACAAGCTCGTCGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTAT GTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTGTACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTACCCTGGTGATTAGTGATCCGATGTATGTTGAGTGTGAACTGATACAGAACAATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCA ] [+] EMBL C72705 [ cngnCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGNTNGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCA GTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCATGGGGACATCCCGAGCCGACACCCGACGTTCTTCCTTNCCTAAAAGACCGGGGGAGCAGGTTGGACAAGCTCGTCGGCGCC ] [-] EMBL CA763751 [ aggtgagcCAGACG AGACAAGGGGGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCACGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCAT TGGACAT TCGAG CGACA CCGACGTTCTT CTT CCT AAAGAAC GGGGAGCAGG TGGACAAGCTTGTTGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAAGCTGTATATCCGTTTTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTACCCTGGTGATTAGTGATCCGATGTATGTTGGGTGTGAACTGATACAGAACAATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATTTGCCATGAATCCATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA] [+] EMBL BI803068 [ GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTACCTACTTGCCTGATTCTTAACCTGGTGGAAAAAAA ] [+] EMBL BI804189 [ GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTACCCTGGTGAAAAAAAA ] [+] EMBL BI804075 [ GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTA CCTGGTGAAAAAAAA ] [+] EMBL BI804419 [ GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTA CCTGGTGAAAAAAAA ] consensusID : consensus_10923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [AAACATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGCCTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCATGATTCTAGTATCTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGATATGATGTGGGCTTGGTCGGCCAGTAAAAAA] [+] EMBL BI813766 [AAACATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGCCTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCATGATTCTAGTATCTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGATATGATGTGGGCTTGGTCGGCCAGTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10923#0 TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCG 60 consensus_10923#1 ------------------------------------------------------------ consensus_10923#0 CGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAG 120 consensus_10923#1 ------------------------------------------------------------ consensus_10923#0 TTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGATGAAGA 180 consensus_10923#1 ------------------------------------------------------------ consensus_10923#0 AGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGA 240 consensus_10923#1 ------------------------------------------------------------ consensus_10923#0 CCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGC 300 consensus_10923#1 ------------------------------------------------------------ consensus_10923#0 ATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCC 360 consensus_10923#1 ------------------------------------------------------------ consensus_10923#0 CCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCATGGGA 420 consensus_10923#1 ---------------------------------------------------------AAA 3 * consensus_10923#0 CATCC-GAGC-GACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTC 478 consensus_10923#1 CATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTC 63 ***** **** ************************************************* consensus_10923#0 GTCGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGA 538 consensus_10923#1 GTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTG-CCGCGCTTGCTGACAGCGCCTGA 122 ***************** ****************** *********************** consensus_10923#0 GGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGA 598 consensus_10923#1 GGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGA 182 ************************************************************ consensus_10923#0 GTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTAT----GTTCTGCTGAG 654 consensus_10923#1 GTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTGAG 242 ********************************************* *********** consensus_10923#0 GTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAG 714 consensus_10923#1 GTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAG 302 ************************************************************ consensus_10923#0 TATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGC 774 consensus_10923#1 TATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGC 362 ************************************************************ consensus_10923#0 CTGATTTTACCCTGGTGAAAAA-AAATCCGATGTATGTTGAGTGTGAACTGATACAGAAC 833 consensus_10923#1 CTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCA---TGATTCT-AGT 418 **** * * * * ***** * * * **** **** * * consensus_10923#0 AATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAG-GAATGGCTACCAATCTGCC 892 consensus_10923#1 ATCTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGAT 478 * * ****** * * * ** * * *** * * * consensus_10923#0 ATGAATCCATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA 933 consensus_10923#1 ATGA---TGTGGGCTTGGTCGGCCAGTAAAAAA-------- 508 **** ** * * * ** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||