cluster # 10927

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Oryza sativa
cluster # 10927 cluster # 10927 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10927#0 length = 813 sequences # 2

consensus_10927#1 length = 655 sequences # 6

consensusID : consensus_10927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 813
fasta sequence

                              [TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAAAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGACATCATC]

[+] EMBL CB649549             [TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAAAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGACATCATC]
[+] EMBL CB649752             [                    CCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGAC      ]




>consensus_10927#0
TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTACGATATAAGA
AAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATT
GTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGG
AAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAA
AGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGA
TCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACT
CGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAAAAGA
GTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCT
CGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATC
AGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGC
CAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGT
GGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAG
GGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACC
CCTCCTCTTTTCACCCATGGCTGTGACATCATC

consensusID : consensus_10927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 655
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA-CTAC-ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACAC-GGTGACACC-AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA-CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG-CGACGCCT-GCACG-ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA-GCATCCACCAACCAGGTTCA-----ACCCGTGA-GGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTT-GATGCACCCATCAATCCATCA-GGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT]

[-] EMBL C97322               [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA CTAC ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGACGACGCCTGGCACGTATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGGCATCCACCAACCAGGTTCA     ACCCGTGAGGGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGGATGCACCCATCAATCCATCAGGGNAAACCACCATT                                                                                          ]
[-] EMBL BM419183             [                          TTTTTTTTTTGAGCTACGNTATACAGTTTGAAATTACGATATAAGAAAAGGGACTG TGTTTTGAAGATGCTGACNCGGGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BQ908349             [                              TTTTTTGA CTAC ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTG TG TTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATA TGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCAACATTACCCGTGA GGCAATCATCGAGTTTG TGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTGGGCCCTGTGGAA                                                                                                                                                ]
[-] EMBL BQ908353             [                              TTTTTTGA CTAC ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTG TG TTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCAACATTACCCGTGA GGCAATCATC                                                                                                                                                                                                                                                      ]
[+] EMBL CB638492             [                                               TACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCA     ACCCGTGA GGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTT GATGCACCCATCAATCCATCA GGCAAA                                                                                                  ]
[-] EMBL CA765233             [                                                ACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGGCAC GGTGACACCAAACACATACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATAGAACACAGTGGAAGACCAACCCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCA     ACCCGTGA GGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTCGGAGGCGCCGTT GATGCACCCATCAATCCATCA GGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT]




>consensus_10927#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTACATATACAGTTTGAAATTA
CGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACG
AACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGG
AACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAG
GACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGC
ATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCC
ACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTT
GGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCAT
CACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCA
TCAATCCATCAGGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCC
TCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10927#0      ----------TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTA 50
consensus_10927#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTACATATACAGTTTGAAATTA 60
                                 *  ******** *      *     *************************

consensus_10927#0      CGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACG 110
consensus_10927#1      CGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACG 120
                       ************************************************************

consensus_10927#0      AACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGG 170
consensus_10927#1      AACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGG 180
                       ************************************************************

consensus_10927#0      AACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAG 230
consensus_10927#1      AACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAG 240
                       ************************************************************

consensus_10927#0      GACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGC 290
consensus_10927#1      GACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGC 300
                       ************************************************************

consensus_10927#0      ATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCC 350
consensus_10927#1      ATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCC 360
                       ************************************************************

consensus_10927#0      ACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTT 410
consensus_10927#1      ACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTT 420
                       ************************************************************

consensus_10927#0      GGCTAAAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCAT 470
consensus_10927#1      GGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCAT 480
                       ***** ******************************************************

consensus_10927#0      CACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCA 530
consensus_10927#1      CACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCA 540
                       ************************************************************

consensus_10927#0      TCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCC 590
consensus_10927#1      TCAATCCATCAGGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCC 600
                       ******************************** ***************************

consensus_10927#0      TCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCT 650
consensus_10927#1      TCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT----- 655
                       *******************************************************     

consensus_10927#0      TCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGG 710
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      ATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTAT 770
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      GCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGACATCATC 813
consensus_10927#1      -------------------------------------------