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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence
[GTACAGCAAACACCAACTCAGCTAGCTATACTCTACTCATCTTCTCTGCCAGCTGCTACTACACCAACCAGAGCTAATCAAGTAACAATGGCGGGAAGAGGCAGTGCCATGGCGGCGGTTGGTGTGCTGGTGCTCCTCTGCGTGCTCCTCCACGGCGAGATGGCCGAGTCGGCGGTGTTCACCGTCGGCGACCGCGGCGGGTGGGGGATGGGGGCGGGATCGTGGGCGAACGGGAAGCGGTTCAAGGCCGGCGACGTGCTGGTGTTCAAGTACGACTCGTCGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGGTACAAGGGCTGCACCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCTCGCCCGCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTAGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGCCACATTATGCAAAAAA]
[+] EMBL AK062526 [GTACAGCAAACACCAACTCAGCTAGCTATACTCTACTCATCTTCTCTGCCAGCTGCTACTACACCAACCAGAGCTAATCAAGTAACAATGGCGGGAAGAGGCAGTGCCATGGCGGCGGTTGGTGTGCTGGTGCTCCTCTGCGTGCTCCTCCACGGCGAGATGGCCGAGTCGGCGGTGTTCACCGTCGGCGACCGCGGCGGGTGGGGGATGGGGGCGGGATCGTGGGCGAACGGGAAGCGGTTCAAGGCCGGCGACGTGCTGGTGTTCAAGTACGACTCGTCGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGGTACAAGGGCTGCACCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCTCGCCCGCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTAGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGC ]
[+] EMBL AU058150 [ TCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGGCGCCATGCCGTCCATCTCAACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGATCGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCAATGCATCTATGCATGCATACACACATGGATCAATATATAATAGTTGTACACTTCTTTGAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGNCACATTATGCAAAAAA]
consensusID : consensus_10933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 755 fasta sequence
[CCACCACTCGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC-GATGGT-CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACT-CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG-TGGC-GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCA-CCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTGGCCCAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100153 [CCACCACTCGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC GATGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACT CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG TGGC GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCA CCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTG ]
[+] EMBL C27387 [ CGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAG TACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGCAGTNGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCAGNTCCGNCGGTGTACACCGTCGGCGACCNCGGCGGCTGGGGCTTCAACT CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCG GCNNGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGGTTNGCTGGTGAACGCGGCGGGGTACAAGTCGTGCAGCG GCCGAGGGGTGCCAAGGTGTACAAGTNGGGCAGCGAC ]
[+] EMBL AA752386 [ cgagCTCACACTCACTCGCTCAGCACTACYTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC GATGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACTACCGGCGGCTGGCTCAGGGGCAAACGC ]
[+] EMBL CA755130 [ TCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGTAGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGGGCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGC GATGGT CCTCCTCTGCGTGCTCCTCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCTTCAACT CCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG TGGC GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCA CCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCAAACAGCTGCGTTCTGGCCCAAAAAAAAAAAAAAAAAA]
[+] EMBL BI804898 [ GATGGTCCCTCCTCTGCGTGCTCCTCCAC GCGAGCTC CCGAGTC GCCGTGTACACCGTCGGCGACC C GC GCTGGGGCTTCAACT CC GC GCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAGCCCGTCGGCGCACAACGTGG TGGC GGTGAACGCGGCGGGGTACAAGTCGTGCAGCGCGCCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCACCCCTGGCGCGCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCGCCGTCACCGCCGCCTGATCGGCCGGCCGGTCGCCGGAGTCCGGCGGGATCGAATGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCC AACAGCTGCGTTCTGGCCCAAAAAAAAAA ]
consensusID : consensus_10933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[NCCCGGAGTCCGGCGGGATCAAATGTAGTAGTGNCAATCTNTAAATATCCGGGAAGTAGATCCNAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCNAACAGCTGCGTTTTGGCCCANCCGTATATATGTAGTACAAGGTTTTNNAAAAAAAAAAAAAA]
[+] EMBL AU166879 [NCCCGGAGTCCGGCGGGATCAAATGTAGTAGTGNCAATCTNTAAATATCCGGGAAGTAGATCCNAATAATTCTGTCAGTGTCCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGATTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTTAATAAAAGCCNAACAGCTGCGTTTTGGCCCANCCGTATATATGTAGTACAAGGTTTTNNAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10933#1 CCACCACTCGCCTCACACTCACTCGCTCAGCACTACTTGCACCCCCTAGCTGAGATCAGT 60
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 --------------------------------GTACAGCAAACACCAACTCAGCTAGCTA 28
consensus_10933#1 AGTAAACGGTCAGTCAATTGTTGCAAAGCGATCAGCTACTGGCGATGGCTCAGGGAAGGG 120
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 TACTCTACTCATCTTCTCTGCCAGCTGCTACTACACCAACCAGAGCTAATCAAGTAACAA 88
consensus_10933#1 GCAGTGCTGCAGGACGACGCAACGCCGCCGTGCTGGCGATGGTCCTCCTCTGCGTGCTCC 180
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 TGGCGGGAAGAGGCAGTGCCATGGCGGCGGTTGGTGTGCTGGTGCTCCTCTGCGTGCTCC 148
consensus_10933#1 TCCACGGCGAGCTCGCCGAGTCGGCCGTGTACACCGTCGGCGACCGCGGCGGCTGGGGCT 240
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 TCCACGGCGAGATGGCCGAGTCGGCGGTGTTCACCGTCGGCGACCGCGGCGGGTGGGGGA 208
consensus_10933#1 TCAACTCCGGCGGCTGGCTCAGGGGCAAGCGCTTCCGCGCCGGCGACGTGCTCGTGTTCA 300
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 TGGGGGCGGGATCGTGGGCGAACGGGAAGCGGTTCAAGGCCGGCGACGTGCTGGTGTTCA 268
consensus_10933#1 AGTACAGCCCGTCGGCGCACAACGTGGTGGCGGTGAACGCGGCGGGGTACAAGTCGTGCA 360
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 AGTACGACTCGTCGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGGTACAAGGGCTGCA 328
consensus_10933#1 GCGCG---CCGAGGGGTGCCAAGGTGTACAAGTCGGGCAGCGACCGCGTCACCCTGGCGC 417
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 CCGCCGCCCCGCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACCCTCGCCC 388
consensus_10933#1 GCGGCACCAACTACTTCATCTGCAGCTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCG 477
consensus_10933#2 ------------------------------------------------------------
consensus_10933#0 GCGGCACCAACTACTTCATCTGCAACTTCCCCGGCCACTGCCAGGCCGGCATGAAGATCG 448
consensus_10933#1 CCGTCACCGCCGCCTGATCGGCCGGCCGGTCG-CCGGAGTC-----CGGCGGGATCG-AA 530
consensus_10933#2 ------------------------------NC-CCGGAGTC-----CGGCGGGATCA-AA 23
consensus_10933#0 CCGTCACCGCCGCCTAGTTCTTCTTCTTCCTCGTCGTCGTCGTCTCCGTCGCCGGCATGG 508
** *** ** ** *
consensus_10933#1 TGTAGTAGTGGCAATCTCTAAATATCCGGGAAGTAGATCCAA-TAATTCTGTCAGT--GT 587
consensus_10933#2 TGTAGTAGTGNCAATCTNTAAATATCCGGGAAGTAGATCCNAATAATTCTGTCAGT--GT 81
consensus_10933#0 CGCCATGCCGTCCATCTC-AACCAGCTGCTTATTATATCTATATACAAATGTTTGTCGAT 567
* * * * **** ** * * * * ** *** ** *** ** *
consensus_10933#1 CCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGA 647
consensus_10933#2 CCTACGTTGCTGAATGACCGTCTTCGTGTTTAGGCCTCTGCTTTGTTGCAGGTTAGTTGA 141
consensus_10933#0 CGTGTGTGTTCTAACCACCATCAGCTGATTTATAATTCTACGAATGAAGAATACGATCCA 627
* * ** ** *** ** * **** *** * * * *
consensus_10933#1 TTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTT 707
consensus_10933#2 TTGTTGGCAAGTATAGAGAGGAATATATGATTTATGTGATGTGTATTTTGAGAAGAATTT 201
consensus_10933#0 ATGCATCTATGCATGCATACACACATG-GATCAATAT-ATA-ATAGTTGTACACTTCTTT 684
** * * ** * * * ** *** ** * ** ** ** * * ***
consensus_10933#1 AATAAAAGCCAAACAGCTGCGTTCTGGCCCAAAAAAAAAAAAAAAAAA------------ 755
consensus_10933#2 AATAAAAGCCNAACAGCTGCGTTTTGGCCCANCCGTATATATGTAGTACAAGGTTTTNNA 261
consensus_10933#0 GAGTGACGGATGTTGTATCCGGTGAAATTTATATACATATAAATATGAATAAAAGCCACA 744
* * * * ** * * * * * * *
consensus_10933#1 -------------
consensus_10933#2 AAAAAAAAAAAAA 274
consensus_10933#0 TTATGCAAAAAA- 756
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||