These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1189 fasta sequence [GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACGTCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCGCTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGGCAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGGCTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCTGCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCCACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAGGAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGGCTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTCTACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCCTGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTCGTGGCGTCCATCGCGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTAGCGCCGGCGCGGCGCGGGGGGGCATCCGGATGTACGAGTTCCGGTGCGCGCGCGCCGCCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGCAAGCAGCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCTCGACGTGCTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGACATTGTCGAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAACACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTACTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTAGTGGTACTCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG] [+] EMBL AK058560 [GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACGTCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCGCTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGGCAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGGCTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCTGCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCCACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAGGAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGGCTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTCTACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCCTGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTCGTGGCGTCCATCGCGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTAGCGCCGGCGCGGCGCGGGGGGGCATCCGGATGTACGAGTTCCGGTGCGCGCGCGCCGCCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGCAAGCAGCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCTCGACGTGCTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGACATTGTCGAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAACACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTACTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTAGTGGTACTCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG] consensusID : consensus_1094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCCATGGCTGTGCCTCTGCCTCCCCCCAACCTCATCATCACCCTTCTCCCCCTCGTCTAGACACCCATCATTGCCCCTCCACGCCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTCTCCTCCTTGCCCTTCTTGCACCGCGCGCTATATATAGCCAGCCGGAGCTCGACCTTCCCGACGCATCGATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGGATTCGCCATGAACGCCTTCTTCACGGCGCTGGCGAGAGGGCTGGACGACCTGAACAGCGGCCGCGGGCTGGCCTCCCTTGCGGCGCTGCTGCGGGCGGGGGGGCCTCTCAGGGGGTGGACTCCCACTCAAGCTGCTGGT] [+] EMBL CA754678 [CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCCATGGCTGTGCCTCTGCCTCCCCCCAACCTCATCATCACCCTTCTCCCCCTCGTCTAGACACCCATCATTGCCCCTCCACGCCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTCTCCTCCTTGCCCTTCTTGCACCGCGCGCTATATATAGCCAGCCGGAGCTCGACCTTCCCGACGCATCGATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGGATTCGCCATGAACGCCTTCTTCACGGCGCTGGCGAGAGGGCTGGACGACCTGAACAGCGGCCGCGGGCTGGCCTCCCTTGCGGCGCTGCTGCGGGCGGGGGGGCCTCTCAGGGGGTGGACTCCCACTCAAGCTGCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1094#0 GATCGACCGGTGTTCGATCTTTCTTGCTGTGGGGATTTCGCCATGAACGCCTTCTTCACG 60 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 TCGCTGGCGAGAGGGCTGGACGACCTGAGCAGCGGCGGCGGGCTGTCGTCGCTGCCGGCG 120 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CTGCTGCGGGCGGCGGCGCTGCTCAGGGGGCTGCACTCGCAGCTCACGCTGCTGGTGGGG 180 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CAGCTCCACCTGCCGCCCGGTGGGCGGTGGCTCGACGAGTACATGGACGAGACCGCGCGG 240 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CTCTGGGAGGCTTGCCTCGCCGTCAAGGTCGGCCTTGCCGCCGTCGAGCGGTATTGCGCT 300 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 GCCGCGTCTTGTGCTGCGGCCGCCATGGATGACTGGCTCCAGGACCCTTCCCCTCTCTCC 360 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 ACTCGCCAGGTGATGAGGGCGATCTCTGCGTCGAGGAGGGAGGCCATGGCGGCGGAGGAG 420 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 GAGAACCGTGCGCTGTCGGAGGCGAGGATCGCGCCGCTGTCGCTGCAGCTCGACGAGCGG 480 consensus_1094#1 ----------CACAGCGAGCAGCAGCGAGCGAGCGAGCGAGACATCAGCC--ATGGCTG- 47 * * * * ** ** ** ** * * **** * * * consensus_1094#0 CTGCTGCTGCGCGCCGCGGACGCCAGGTTGAGCGGCTTCAACGGCTTCCGCGGCCTGCTC 540 consensus_1094#1 -TGCCTCTGCCTCCCCCCAACCTCA------------TCATCACCCTTCTCCCCCTCGTC 94 *** **** ** * ** ** *** * * * * * *** ** consensus_1094#0 TACGCGCTGCACAACGCCAGCTCGCTGCTGCTCCTCGTCCTCGCCTCCGGCGCCGTCTCC 600 consensus_1094#1 TAGACACCCATCATTGCCCCTCCAC-GCCCCCCGCCTCCTCCTCCTCCTCCCCGATCGTC 153 ** * * ** *** * * ** * * * * * ***** * * ** * consensus_1094#0 TGCGCCGCCGCCGCAGCGGGGCCGTGCTCCGCGGATGGCGCCGCGGACGCCGGCGGGTTC 660 consensus_1094#1 TCCTCC-TTGCCCTTCTTGCACCGCGCGCTATATATAGCCAGCCGGAGCTCGACCTTCCC 212 * * ** *** * *** ** * ** ** **** ** * * consensus_1094#0 GTGGCGTCCATCG--CGATGCTGCAGCAGAGGATGGCGGAGGAGGCCGACGCCGACGGTA 718 consensus_1094#1 GACGCATCGATCGACCGGTGTT-CGATCTTTCTTGCTGTGGGGGATT--CGCCATGAACG 269 * ** ** **** ** ** * * ** * ** * **** consensus_1094#0 GCGCCGGCGCGGCGCGGG-GGGGCATCCGGATGTAC-GAGTTCCGGT-GCGCGCGCGCCG 775 consensus_1094#1 CCTTCTTCACGGCGCTGGCGAGAGGGCTGGACGACCTGAACAGCGGCCGCGGGCTGGCCT 329 * * * ****** ** * * * *** * * ** *** *** ** *** consensus_1094#0 CCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCCGC--AAGCA 833 consensus_1094#1 CCCTTGCGGCGCTGCTGCGGGCGGGGGGGC-CTCTCAGGGGGTGGACTCCCACTCAAGCT 388 ** * * **** ** ** ** ** ** * * ** ** ** * *** * **** consensus_1094#0 GCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGCGGCT 893 consensus_1094#1 GCTGGT------------------------------------------------------ 394 ** * consensus_1094#0 CGACGTGCTCCGGACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGA 953 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CATTGTCGAGGGCAGGAAGGAGCTCTCCGACCTTTGCAGCCACTGATCGATCGACTGCAA 1013 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGGTAGAGTA 1073 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 CTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTA 1133 consensus_1094#1 ------------------------------------------------------------ consensus_1094#0 GTGGTACTCGATGAGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATGATGTTG 1189 consensus_1094#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||