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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1213 fasta sequence
[GCAGCCCTATGGTTGAAGCTCAATGCTTTGTGCAACTAGGATTTCCTGTGGTTTTAAAGAGCACAACAATGACAGAGGATATTCACTATGTTGGGTTTCTAAGTAAACTTCTGGAGACGAAAATCATGCAAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCT-GGAGGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAGGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGNGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCCAGAATGATTAAAAGAATATGGGAGTAAGGATGCAGACATTTGTATGCACTGTAAAAAAAGA]
[+] EMBL OSC109451 [GCAGCCCTATGGTTGAAGCTCAATGCTTTGTGCAACTAGGATTTCCTGTGGTTTTAAAGAGCACAACAATGACAGAGGATATTCACTATGTTGGGTTTCTAAGTAAACTTCTGGAGACGAAAATCATGCAAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGGAGGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAGGA ]
[+] EMBL CB667435 [ AAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCT GGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGNGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCA ]
[-] EMBL CB667436 [ TTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCCAGAATGATTAAAAGAATATGGGAGTAAGGATGCAGACATTTGTATGCACTGTAAAAAAAGA]
consensusID : consensus_10940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1020 fasta sequence
[GATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGTTTAGTGAAGTTTATCTTTATCAAATTCGTGCCAATATAGTGCATAGTGTTCTAATCTTTGAGAAACCACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGGGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAAT-GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAGACAAAAAAAA]
[+] EMBL CF312414 [GATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGTTTAGTGAAGTTTATCTTTATCAAATTCGTGCCAATATAGTGCATAGTGTTCTAATCTTTGAGAAACCACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGGGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGGATCTGTCAAGACAATCATCTGCTTGACTCCAG ]
[+] EMBL AK058447 [ TCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTATGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAAT GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAGAC ]
[+] EMBL CA998882 [ AAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAAT GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCA ]
[+] EMBL AU166308 [ AGATCCAAAAAT GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAAAAAAAAAAAA]
consensusID : consensus_10940#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[ACGAGNACAAGGGGGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGNCTNAAAGGT]
[+] EMBL CA764062 [ACGAGNACAAGGGGGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGNCTNAAAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10940#0 GCAGCCCTATGGTTGAAGCTCAATGCTTTGTGCAACTAGGATTTCCTGTGGTTTTAAAGA 60
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 ------------------------------------------------------------
consensus_10940#0 GCACAACAATGACAGAGGATATTCACTATGTTGGGTTTCTAAGTAAACTTCTGGAGACGA 120
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 ------------------------------------------------------------
consensus_10940#0 AAATCATGCAAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCT 180
consensus_10940#2 ---------------ACGAGNACAAGGGGGGACAGGTTTACTCAGTCAATGTAGGTGTCT 45
consensus_10940#1 ------------------------------------------------------------
consensus_10940#0 TCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATT 240
consensus_10940#2 TCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATT 105
consensus_10940#1 ------------------------------------------------------------
consensus_10940#0 TTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAGGAGATATCAT 300
consensus_10940#2 TTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCAT 165
consensus_10940#1 --------GATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCAT 52
***************************************** **********
consensus_10940#0 TTCTACAAAATGAAGGCCCTTCTGAGGAAGACGTATTAACTATCCTTGAAATTGAACAAA 360
consensus_10940#2 TTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAA 225
consensus_10940#1 TTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAA 112
************************* **********************************
consensus_10940#0 GAGCTCATGAAAATGGATTACAGG------------------------------------ 384
consensus_10940#2 GAGCTCATGAAAATGGATTACAGG------------------------------------ 249
consensus_10940#1 GAGCTCATGAAAATGGATTACAGGTTTAGTGAAGTTTATCTTTATCAAATTCGTGCCAAT 172
************************
consensus_10940#0 -------------------------------------AAAATTACTACTGGCTGGATCGA 407
consensus_10940#2 -------------------------------------AAAATTACTACTGGCTGGATCGA 272
consensus_10940#1 ATAGTGCATAGTGTTCTAATCTTTGAGAAACCACAGGAAAATTACTACTGGCTGGATCGA 232
***********************
consensus_10940#0 GTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATC 467
consensus_10940#2 GTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATC 332
consensus_10940#1 GTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGGGATC 292
******************************************************* ****
consensus_10940#0 CAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCC 527
consensus_10940#2 CAAGATGAGGGACGNCTNAAAGGT------------------------------------ 356
consensus_10940#1 CAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCC 352
************** ** ** * *
consensus_10940#0 TTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCG 587
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 TTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCG 412
consensus_10940#0 AAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGC 647
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 AAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGC 472
consensus_10940#0 AGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGG 707
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 AGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGG 532
consensus_10940#0 AGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGT 767
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 AGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGT 592
consensus_10940#0 AAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGA 827
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 AAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGA 652
consensus_10940#0 CGACAAGATTTTGGTTTCCTCCTGNGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGAT 887
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 CGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGAT 712
consensus_10940#0 TGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCG 947
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 TGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCG 772
consensus_10940#0 TGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTA 1007
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 TGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTA 832
consensus_10940#0 ACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGG 1067
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 ACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGG 892
consensus_10940#0 AAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTT 1127
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 AAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTT 952
consensus_10940#0 GGATGTGTGTTTGTGGGAAAACCCCAGAATGATTAAAAGAATATGGGAGTAAGGATGCAG 1187
consensus_10940#2 ------------------------------------------------------------
consensus_10940#1 GGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAGAC 1012
consensus_10940#0 ACATTTGTATGCACTGTAAAAAAAGA 1213
consensus_10940#2 --------------------------
consensus_10940#1 AAAAAAAA------------------ 1020
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||