Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10942 cluster # 10942       Sequences # 8       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10942#0 length = 1498 sequences # 8  
consensusID : consensus_10942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1498
fasta sequence 
                              [CTCTTTGCGAGAAAATCACTGCCAGATTCGAGGGTTTTCGTACAACAGGAGGGGAAGTGCTACAGCTNAAAAGCCCCCCACAAA-ACACATCTTNNACAACAACAGGGCCGTATCATCATGATCATCAAACATACATCCAGCTGGAAGAAG-AAAAAAAGGGGGCAAAAAATAGAATTGAATTACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCTCGAGGAGATCCAATCAACTACGCGTTCTCCAGAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCG---GGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTATTGTTGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCC-TTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGCCCCGCCATCACCTTCCTCGCACCTCTCCTCAAATTCTTCTTCCTGGTTCCCCATTCTCAACGCAGAATCAAGCTGTTTCCTCTCTTCGGCTGTCAACACTTCATCCAGCTCCGCGTCAAGTTCAGTGCCCCTCCCATTCTTCTCCTCCCCCTCCATCGCAAACAGCTCCTCATCTGTCATCGCCCCCGGCACACGCCTTGACTTCACAGTCACCAGAACGTTTAACATATCATAAACCTTAGCTTTCCAATGTCCAACGGCTTCCGTCCTCTCCTGCCGGCGCCAATTCAAATGAGGCACAAGCTCTGCCTGCGTCACGTCGATCCCGGGACGATACATGTTCGTCTTTGACATCAACGCCACCTCAAGTGCGACC]

[+] EMBL OSAA31875            [CTCTTTGCGAGAAAATCACTGCCAGATTCGAGGGTTTTCGTACAACAGGAGGGGAAGTGCTACAGCTNAAAAGCCCCCCACAAANACACATCTTNNACAACAACAGGGCCGTATCATCATGATCATCAAACATACATCCAGCTGGAAGAAGAAAAAAAAGGGGGCAAAAAATAGAATTGAATTACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AK060586             [                                                GAGGGGAAGTGCTACAGCTAAAAAGCCCCCCACAAA ACACATCTTTAACAACAACAGGGCCGTATCATCATGACCATCAAACATACATCCAGCTGGAAGAAG AAAATAAGGGGGCAAAAAATAGAATTGAATTACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCTCGAGGAGATCCAATCAACTACGCGTTCTCCAGAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB652566             [                                                                                                                                                                                                                                         tccccttaaCGTTCTCCAGAG  CATTATCAATCTATGCTGTCACCTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCG   GGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTATTGTTGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTANGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCCTTTCTTATC TTTGCCACGCCATTTGCATCC                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB638446             [                                                                                                                                                                                                                                                    TTCTCCAAAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCG   GGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTATTGTTGGAACAATAAGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AA751958             [                                                                                                                                                                                                                                                                 ATTATCAATNTATGNTGTCAGGTGCGCAGCACAGCTGACATCAACATCTAACATNTCNGAANGAAAGGTGACCTGNTATGTGGCGAAACTTTTTNANTCNTCAAAGCCATCCATCATCG   GGTGACNTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCNGTTNTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCTATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCCTGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGTAGCAAACTCATCCAAAGGTTGTAATTCCTCAAACNTTGTGAATNTCACG NG NTCGTATTGTTGctntt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL OSAA31784            [                                                                                                                                                                                                                                                                                     GGTGCGCAGCACAGCTGACATCAACATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAAGCCATCCATCATCGGGTGGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGTTGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATCAACCCAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB652565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGACTCGTATTGTNGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGTCAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGGGATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCC TTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGCCCCGCCATCACCTTCCTCGCACCTCTCCTCAAATTCTTCTTCCTGGTTCCCCATTCTCAACGCAGAATCAAGCTGTTTCCTCTCTTCGGCTGTCAACACTTCATCCAGCTCCGCGTCAAGTTCAGTGCCCCTCCCATTCTTCTCCTCCCCCTCCATCGCAAACAGCTCCTCATCTGTCATCGCCCCCGGCACACGCCTTGACTTCACAGTCACCAGAACGTTTAACATATCATAAACCTTAGCTTTCCAATGTCCAACGGCTTCCGTCCTCTCCTGCCGGCGCCAATTCAAATGAGGCACAAGCTCTGCCTGCGTCACGTCGATCCCGGGACGATACATGTTCGTCTTTGACATCAACGCCACCTCAAGTGCGACC]
[-] EMBL CA762596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACTGGTCTTAACCCCTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTTGCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATTCGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCCC TTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGC                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_10942#0
CTCTTTGCGAGAAAATCACTGCCAGATTCGAGGGTTTTCGTACAACAGGAGGGGAAGTGC
TACAGCTNAAAAGCCCCCCACAAAACACATCTTNNACAACAACAGGGCCGTATCATCATG
ATCATCAAACATACATCCAGCTGGAAGAAGAAAAAAAGGGGGCAAAAAATAGAATTGAAT
TACAGATTAGCGGGGTATATAGCCATCCTGTACTTCCTCGAGGAGATCCAATCAACTACG
CGTTCTCCAGAGCACATTATCAATCTATGCTGTCAGGTGCGCAGCACAGCTGACATCAAC
ATCTAACATCTCTGAATGAAAGGTGACCTGCTATGTGGCGAAACTTTTTTACTCCTCAAA
GCCATCCATCATCGGGTGACCTCCTTCCGACGAGGTGCTTTTCGATGATTGTTTCCGAGT
TGAGCCCCGCCTGTTCTTGGCTTTCTTTGCCTTCATCCTCCGTTTCTTCTCGTTGGCATC
AACCCAGGTGTAGTCAGAAGGTATTTGGAATGGATCAACCTCATCTTTCCAGTTACGGCT
ATCACCACTATCACTGGACTGTGCACCACGCCCCCCTCTAACCCACGAATACCATGAGCC
TGATCCTTCTGATTCTTTGCCCTTGGCATCCTGGAATTGCGTTGGGCTTGAGGGTGGGGT
AGCAAACTCATCCAAAGGTTGTAATTCCTCAAACTTTGTGAATGTCACGATGACTCGTAT
TGTTGGAACAATAGGTATCGCAATCTTCACCGGAAATGTGCCTGGAGGCAGTTTAGTAGT
CAAGAGTTCCCTAAGCCTTCTGACAGCTTTCACTTTGTTTGCTAAGACATCAAGCAGAGG
GATCAGTTCATCCGTCTTCAAAGGGAAATCTGGTGTCAGCCACAACACTGGTCTTAACCC
CTTCTTGTATTCACTTTCATGTTTAGTAGAATCCCCTGATGATGCACCCTTCTTCTTCTT
GCTGCTGTTCTTCTCCTTTCCCTTTCCTAGGTCACCTGATTCATCCTTACTCCCTTGATT
CGCCTTGGATGGTTTCTCGTCATTCTTGGTGCCTTTCTTGCCACCCCAACCAAACCATCC
CTTCTTATCTTTTGCCACGCCATTTGCATCCAAATGATCAGCCCCGCCATCACCTTCCTC
GCACCTCTCCTCAAATTCTTCTTCCTGGTTCCCCATTCTCAACGCAGAATCAAGCTGTTT
CCTCTCTTCGGCTGTCAACACTTCATCCAGCTCCGCGTCAAGTTCAGTGCCCCTCCCATT
CTTCTCCTCCCCCTCCATCGCAAACAGCTCCTCATCTGTCATCGCCCCCGGCACACGCCT
TGACTTCACAGTCACCAGAACGTTTAACATATCATAAACCTTAGCTTTCCAATGTCCAAC
GGCTTCCGTCCTCTCCTGCCGGCGCCAATTCAAATGAGGCACAAGCTCTGCCTGCGTCAC
GTCGATCCCGGGACGATACATGTTCGTCTTTGACATCAACGCCACCTCAAGTGCGACC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)