These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1693 fasta sequence [TTTCCCTTATCCGGAAACAGCCTTTGCTTTCCCCCTCCCTAAAACCCCCCGCAGCGGCGCAGCGCCACCTCTCCTCCTCAGCCGAAGCGTCGGGGCCATGGCCATGGCGATGGCGTCGCCGCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTCCGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGC-AAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTTGACTTATTAAAAAA] [+] EMBL AK065664 [TTTCCCTTATCCGGAAACAGCCTTTGCTTTCCCCCTCCCTAAAACCCCCCGCAGCGGCGCAGCGCCACCTCTCCTCCTCAGCCGAAGCGTCGGGGCCATGGCCATGGCGATGGCGTCGCCGCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTCCGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGC AAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATAC ] [+] EMBL CB680193 [ CCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGC AAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAG ] [+] EMBL BP184825 [ CCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTGGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAACAGTTTAACAATT CGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGCAAAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGT ] [-] EMBL CB680194 [ AACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCCCGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTAGAATTAGATATGGGAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTGTTGAGCTGATCTTGTTGACT ] [+] EMBL BI805728 [ AATTGATT CGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAAACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGCAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCC AAACTATTCATAACTGTAAATCATCTGCACC AAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGA CTGATCTTGTTGACTTATTAAAAAA] [+] EMBL AU063635 [ ccgCAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATTTGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGA ] [+] EMBL AU063620 [ AGGGTGAGGTTCCAGGTAGATTACAACGAGTAGTGCCTGAAATTTTGAAACGCCATAGG ACTGGTCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAATCGTGTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATTTGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGAa ] consensusID : consensus_10948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [GATTCGGCACGAGTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGNAGTTTGCAAGCCTGCAATTTGGTTCCAGGGNAATCGTGCCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTTGACTT] [+] EMBL AA751851 [GATTCGGCACGAGTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAAATTGCGCACGGTTGCTGACGAGNAGTTTGCAAGCCTGCAATTTGGTTCCAGGGNAATCGTGCCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACATCCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATAGTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTTGACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10948#0 TTTCCCTTATCCGGAAACAGCCTTTGCTTTCCCCCTCCCTAAAACCCCCCGCAGCGGCGC 60 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 AGCGCCACCTCTCCTCCTCAGCCGAAGCGTCGGGGCCATGGCCATGGCGATGGCGTCGCC 120 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 GCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTC 180 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 CGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCG 240 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 TCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACC 300 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 CGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCA 360 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 GGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGG 420 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 ATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGA 480 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 CAGGATTGGATTAAGCATGATTAATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAA 540 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 GACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGC 600 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 TGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGATGTGT 660 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 TCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGG 720 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 AGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCA 780 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 GTTTAACAATTCCGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGA 840 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 AGACACCTTGGGTACTGTTGACATACTAGTTGCAAGCATTGGCACAGGTGGCACCATTAC 900 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 AGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACC 960 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 TGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGT 1020 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 TCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGA 1080 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 ACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGC 1140 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 TATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAG 1200 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 CTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAG 1260 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 AATGAGGAAGAGATAACTAACTTCTGCCACTCCAGGAAGAAGAAGGTTGCCAGTTCTTAA 1320 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 ACCTAACATACTTCCACGGCATAACAGATTTTGAAGGGTGAGGTTCCAGGTAGATTACAA 1380 consensus_10948#1 ------------------------------------------------------------ consensus_10948#0 CGAGTAGTGCCTGAAATTTTGAAACGCCATAGGCACTGGTCAGCCTCACAGAAGGTTGAA 1440 consensus_10948#1 -----GATTCGGCACGAGTTGAAACGCCATAGGCACTGGCCAGCCTCACAGAAGGTTGAA 55 * * * ********************* ******************** consensus_10948#0 ATTGCGCACGGTTGCTGACGAGTAGTTTGCAAGCCTGCAATTTGGTTCCAGGGAA-TCGT 1499 consensus_10948#1 ATTGCGCACGGTTGCTGACGAGNAGTTTGCAAGCCTGCAATTTGGTTCCAGGGNAATCGT 115 ********************** ****************************** * **** consensus_10948#0 GTCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACAT 1559 consensus_10948#1 GCCCAAAACTATTCATAACTGTAAATCATCTGCACCAAAGCGTCTGGAACCAGACCACAT 175 * ********************************************************** consensus_10948#0 CCACGATGGAATATGTAGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATA 1619 consensus_10948#1 CCACGATGGAATATGTTGAATTAGATATTGCAGCTAGCATAGTAGGATCTTTCTTCAATA 235 **************** ******************************************* consensus_10948#0 GTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTT 1679 consensus_10948#1 GTTTAGGCTTGGTAATGGAACAGATCTGTAATGTGATATACCTTTTGAGCTGATCTTGTT 295 ************************************************************ consensus_10948#0 GACTTATTAAAAAA 1693 consensus_10948#1 GACTT--------- 300 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||