cluster # 10949

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Oryza sativa
cluster # 10949 cluster # 10949 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10949#0 length = 720 sequences # 7

consensus_10949#1 length = 184 sequences # 1

consensusID : consensus_10949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 720
fasta sequence

                              [CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCGTGCTCCCCACCGCCAC-TCGCCCGCTCGCTGTCCCCAGATGGCCCCCT-CCCNCCTCGCCGCCGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCC-GCCGCCAGTGGCAGCCGCAGG-CGCTCGTCGCCGCCGCCGCCAC-GGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA-GAACAAATCCCAAATTTATT-ATCTGCTAT-GTGATGGCGATGAG-TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAAAATCCTATCAATC-ATCTTATTCACAGTTACACTAATTTTCTTAAAAAAA]

[+] EMBL AU077779             [CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCGTGCTCCCCACCGCCACNTCGCCCGCTCGCTGTCCCCAGATGGCCCCCT CCCNCCTCGCCGCCGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCC GCCGCCAGTGGCAGCCGCAGG CGCTCGTCGCCGCCGCCGCCACNGGCCGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI805585             [                                                     GCTTCCGTGCTCCCCACCGCCAC TCGCCCGCTCGCTGTCCCCAGATGGCCCCCTGCCCTCCTCGCCGCCGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCCTGCCGCCAGTGGCAGCCGCAGGCCGCTCGTCGCCGCCGCCGCCAC CGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGC CTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAAC AATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAATATCCTATCAATC ATCTTATTCACAGTTACACTAATTTTCTTAAAAAAA]
[+] EMBL AU066220             [                                                                                                                                                                                                                                                CAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGANATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAA                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU066347             [                                                                                                                                                                                                                                                 AAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGANATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTG TTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTANGACCAAATCCCAAATTTATTAATCTGCTATGGTGATGGCGATGAGTTTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGGTTCTAGGGGTATAAATTGGGGCAGCAAAAAa                                               ]
[+] EMBL AU223478             [                                                                                                                                                                                                                                                    TACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAACAAATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAAAA                                                ]
[+] EMBL AU174371             [                                                                                                                                                                                                                                                                  GGTGGNGCCCCAGTCCGNCCGGGTGCTCGTCCGCCTCGAACAGATTCNTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATNTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAACAAATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAAAA                                                ]
[-] EMBL OSC22291             [                                                                                                                                                                                                                                                                                                                                                                                                                                     AAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAACAAATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAATATCCTATCAATCAATCTTATTCA                          ]




>consensus_10949#0
CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCG
TGCTCCCCACCGCCACTCGCCCGCTCGCTGTCCCCAGATGGCCCCCTCCCNCCTCGCCGC
CGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCCGCCGCCAGTGGCAGCCGCAGGCGCTC
GTCGCCGCCGCCGCCACGGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGT
ACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTC
CTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATT
TGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGG
TTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCT
TCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGT
GTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGA
GTTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATT
GGGACAGCAAAAATCCTATCAATCATCTTATTCACAGTTACACTAATTTTCTTAAAAAAA

consensusID : consensus_10949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGAGTTGAACAATTTGATATGTCATTCTCTACAAATGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA751845             [GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGAGTTGAACAATTTGATATGTCATTCTCTACAAATGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10949#1
GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAGTGTC
CAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGAGTT
GAACAATTTGATATGTCATTCTCTACAAATGAANAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10949#0      CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCG 60
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      TGCTCCCCACCGCCACTCGCCCGCTCGCTGTCCCCAGATGGCCCCCTCCCNCCTCGCCGC 120
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      CGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCCGCCGCCAGTGGCAGCCGCAGGCGCTC 180
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      GTCGCCGCCGCCGCCACGGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGT 240
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      ACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTC 300
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      CTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATT 360
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      TGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGG 420
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      TTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCT 480
consensus_10949#1      ------------------------------------------------------------
                                                                                   

consensus_10949#0      TCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAG-TTTTTACTCCAAAATCGGAG 539
consensus_10949#1      ----GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAG 56
                              *  *   ** **  *  *   *   * * *** ********************

consensus_10949#0      TGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATG 599
consensus_10949#1      TGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATG 116
                       ************************************************************

consensus_10949#0      AGTTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAAT 659
consensus_10949#1      AGTTGAACAATTTGATATGTCATTCTCTACAAATGAANAAAA------AAAAAAAAAAAA 170
                       *************************************           *  *  * *** 

consensus_10949#0      TGGGACAGCAAAAATCCTATCAATCATCTTATTCACAGTTACACTAATTTTCTTAAAAAA 719
consensus_10949#1      AAAAAAAAAAAAAA---------------------------------------------- 184
                           * *  *****                                              

consensus_10949#0      A 720
consensus_10949#1      -