These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1405 fasta sequence [GCCGCGCCACGTACGCCGCATCGCATGCGCGCGCTTTCCCTCGCCAGAGCAAGTAGCCCGCCGCCTCTTCTTCTTCACCTCCGACGAGCCCTTGCACCCGCGTCGTCGTCTTCTCCGGCGCCGGTGCTGTTGCTGCGTCCTGCGGTTTCTTGTTCTTCTTTGTTTGTTAGCGACAGGGCGGCGGCGGCTCGCCGGAGCAGCGGCAGCAGCAGGAGAAGCATGGCGTCGCAGCAGTTCCCGCCGCAGAATCAGGAGACGCAGCCGGGGAAGGAGCACGCCATGGATCCCCGCCCCGAGGCCATCATCCAGAGCTACAAGCCAGCCAACAAGCTGAAGGACAAGGTGGCGATCGTGACCGGCGGCGACTCCGGCATCGGGCGGGCGGTGTGCCTGTGCTTCGCGCTGGAGGGCGCGACGGTGGCGTTCACGTACGTGAAGGGGCAGGAGGAGAAGGACGCGGAGGAGACGCTCCGCGCGCTGCGCGACATCAGGGCGCGCACCGGCGCCAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATCGACATCCTCGTCAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACCGAGGACGACCTGGAACGCGTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAGCACGCCGTGAAGCGGATGCGCGATCGCCGCGGCGGCGCCGGCGCCGGCGGGTGCAGCATCATCAACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCGA-CCAAGGGCGCCATC-GTGGCGTTCACGAGGG-CGCTGGCGCTGCAGCTGGCGG-AGG-AGGGG-ATCC-GGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTA-GTAGCTTGTGATCCTGTGATACTGTGATGA-TTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTT-GCAACTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCACTAAAAAAAAAAAAAGAAAAAAAAAAAAAANCAAAAAAAA] [+] EMBL AK110652 [GCCGCGCCACGTACGCCGCATCGCATGCGCGCGCTTTCCCTCGCCAGAGCAAGTAGCCCGCCGCCTCTTCTTCTTCACCTCCGACGAGCCCTTGCACCCGCGTCGTCGTCTTCTCCGGCGCCGGTGCTGTTGCTGCGTCCTGCGGTTTCTTGTTCTTCTTTGTTTGTTAGCGACAGGGCGGCGGCGGCTCGCCGGAGCAGCGGCAGCAGCAGGAGAAGCATGGCGTCGCAGCAGTTCCCGCCGCAGAATCAGGAGACGCAGCCGGGGAAGGAGCACGCCATGGATCCCCGCCCCGAGGCCATCATCCAGAGCTACAAGCCAGCCAACAAGCTGAAGGACAAGGTGGCGATCGTGACCGGCGGCGACTCCGGCATCGGGCGGGCGGTGTGCCTGTGCTTCGCGCTGGAGGGCGCGACGGTGGCGTTCACGTACGTGAAGGGGCAGGAGGAGAAGGACGCGGAGGAGACGCTCCGCGCGCTGCGCGACATCAGGGCGCGCACCGGCGCCAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATCGACATCCTCGTCAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACCGAGGACGACCTGGAACGCGTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAGCACGCCGTGAAGCGGATGCGCGATCGCCGCGGCGGCGCCGGCGCCGGCGGGTGCAGCATCATCAACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCGA CCAAGGGCGCCATC GTGGCGTTCACGAGGG CGCTGGCGCTGCAGCTGGCGG AGG AGGGG ATCC GGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAACGGCTAGTTTTTCACTTGTCCCATCTCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACGTGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA GTAGAGTTGCAGTTGTTGTCTGTGTACTAAGCTT GCAGCTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCA ] [+] EMBL OSC333 [ gGCGCTGCG ANCATCAGGGCGCG NNCGGCG CAAGGACCCCATGGCGATCCCCGCNGACCTCGGGTACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATCNACATCCTCGTNAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACCGAGGACGACCTGGAACGCNTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAGCACGCCGTGAAGCGGA ] [+] EMBL BI797481 [ TCGTCGATCAACGCGTACAAGGGGAAC AGACGCTGCTGGACTACACGGCGA CCAAGGGCGCCATC GTGGCGTTCACGAGGG CGCTGGCGCTGCAGCT GCGG AGG AGGGG ATCC GGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA TTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTT GCAACTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCACTAAAAA ] [+] EMBL BI797223 [ CTACACGGCGACCCAAGGGCGCCATCTGTGGCGTTCACGAGGGCCGCTGGCGCTGCATCTGCCGGAAGGAAGGGGAATCCGGGGTGAACGGCGTCGCGCC GGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTC CGGAGGAGAAGGTGA GCAGTTCGGCTCCCAGGTGCCCAT GGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA TTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTT GCAACTCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCA AAAA ] [+] EMBL BI798062 [ TACAC GCGA CCAAGGGCCCCATC GTGGCGTTCACGA GG C CTGGC CTGCAGCTGCCGG AGG A GGG ATCC GGGTGAACGGCGTCGCGCC GGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTC CGGAGGAGAAGGTGA GCAGTTCGGCTCCCAGGTGCCCAT GGCCGCGCCGGCCAGCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATATCGCCGCCGGCGGGCGAGCTCGCCGTCGCC GCCGCCGTGTCTGTCTTGGCTTTTGCTCCGGGCATGTGCCCACGTGTTT CAGTGCGAGTCCACCACATGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA TTAGAGTT CAGTTGTTGTCTGTGTCCTAAGCTT GCAACTCAATCTGCAAGGAAGAAGCCGCCT AAAAC TCCCATCTCATCA AAAAAAA ] [+] EMBL AU172698 [ TTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCANCCGTCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCANATGCTGCACGTCAACGGCGGNGTCATCGTCAACGGCTAGTTTTTCACTTGTCCCATCTCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCNCCACGTGTCAGTCAGTA GTAGCTTGTGATCCTGTGATACTGTGATGA GTANAGTTGCAGTTGTTGTCTGTGTACTAAGCTT GCAACTCAATNTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCGCTAAAAAAAAAAAAAGAAAAAAAAAAAAAANCAAAAAAAA] [+] EMBL BI797964 [ TGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTATGTAGCTTGTGATCCTGTGAT CTGTGATGATTTAGAGTT CAGTT TTGTCTGTGTCCTAAGCTTGGCAACTCAATCTGCAAGGAAGAAGATGAAT ACGTCCCATCTCATCACT ] consensusID : consensus_10962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence [GGCNCNACCGGCGAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTTCCGCAAGTGGTCGACGAGNTGCCGNCNCGTACGNTCCATCGACATCTGTAACAACNNCTGAGAGTCNNNNTTCATAGAATAGAGGATATGGAACNTGTTNAAAATT] [+] EMBL AA751181 [GGCNCNACCGGCGAAGGACCCCATGGCGATCCCCGCCGACCTCGGGTACGACGACAACTTCCGCAAGTGGTCGACGAGNTGCCGNCNCGTACGNTCCATCGACATCTGTAACAACNNCTGAGAGTCNNNNTTCATAGAATAGAGGATATGGAACNTGTTNAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10962#0 GCCGCGCCACGTACGCCGCATCGCATGCGCGCGCTTTCCCTCGCCAGAGCAAGTAGCCCG 60 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 CCGCCTCTTCTTCTTCACCTCCGACGAGCCCTTGCACCCGCGTCGTCGTCTTCTCCGGCG 120 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 CCGGTGCTGTTGCTGCGTCCTGCGGTTTCTTGTTCTTCTTTGTTTGTTAGCGACAGGGCG 180 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GCGGCGGCTCGCCGGAGCAGCGGCAGCAGCAGGAGAAGCATGGCGTCGCAGCAGTTCCCG 240 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 CCGCAGAATCAGGAGACGCAGCCGGGGAAGGAGCACGCCATGGATCCCCGCCCCGAGGCC 300 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 ATCATCCAGAGCTACAAGCCAGCCAACAAGCTGAAGGACAAGGTGGCGATCGTGACCGGC 360 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GGCGACTCCGGCATCGGGCGGGCGGTGTGCCTGTGCTTCGCGCTGGAGGGCGCGACGGTG 420 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GCGTTCACGTACGTGAAGGGGCAGGAGGAGAAGGACGCGGAGGAGACGCTCCGCGCGCTG 480 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 CGCGACATCAGGGCGCGCACCGGCGCCAAGGACCCCATGGCGATCCCCGCCGACCTCGGG 540 consensus_10962#1 -----------GGCNCN-ACCGGCG--AAGGACCCCATGGCGATCCCCGCCGACCTCGGG 46 *** * ******* ********************************* consensus_10962#0 TACGACGACAACTGCCGCAAGGTGGTCGACGAGGTCGCCGGCGCGTACGGCGGCGCCATC 600 consensus_10962#1 TACGACGACAACTTCCGCAAG-TGGTCGACGAGNT-GCCGNCNCGTACGNT----CCATC 100 ************* ******* *********** * **** * ****** ***** consensus_10962#0 GACATCCTCGTCAACAACGCCGCCGAGCAGTACGAGCGCCCCTCCATCACCGACATCACC 660 consensus_10962#1 GACATCTGTAACAACNNC------------TGAGAGTCNNNNTTCATAGAATAGAGGATA 148 ****** **** * * *** * *** * * * consensus_10962#0 GAGGACGACCTGGAACGCGTGTTCCGCACCAACATCTTCTCCTACTTCTTCATGTCGAAG 720 consensus_10962#1 TGGAACNTGTTNAAAATT------------------------------------------ 166 * ** * ** consensus_10962#0 CACGCCGTGAAGCGGATGCGCGATCGCCGCGGCGGCGCCGGCGCCGGCGGGTGCAGCATC 780 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 ATCAACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCG 840 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 ACCAAGGGCGCCATCGTGGCGTTCACGAGGGCGCTGGCGCTGCAGCTGGCGGAGGAGGGG 900 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 ATCCGGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGCTGATCCCGGCGTCGTTC 960 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCG 1020 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 TCGGAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGC 1080 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 CAGATGCTGCACGTCAACGGCGGCGTCATCGTCAATGGCTAGTTTTTCACTTGTCCCATA 1140 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 TCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCTGTCTTGGCTTTTGCTGT 1200 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACATGTCAGTCAGTAGTAGCTTGT 1260 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GATCCTGTGATACTGTGATGATTAGAGTTGCAGTTGTTGTCTGTGTCCTAAGCTTGCAAC 1320 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 TCAATCTGCAAGGAAGAAGATGAATAAAAACGTCCCATCTCATCACTAAAAAAAAAAAAA 1380 consensus_10962#1 ------------------------------------------------------------ consensus_10962#0 GAAAAAAAAAAAAAANCAAAAAAAA 1405 consensus_10962#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||