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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1350 fasta sequence
[GCCCTAATCGTCGCCACCCCGCCCGCCTCCATGGCGACCGCCACCTCCTTCTTCCAGCCGCTCACGACCCCCATCGCCGGCGCCGGCGCCGGCGGTGCCGCCCGGCTCCGTCGCGGGACCCTCGCACTGCCCTTCCCCACCCGCACGAGGCCTCTCCGGCGGCCGACGCCCCTCCTCGTCGCGCGGGCCAAGCGCCCCGGCAGCCGGACCGCGGCGGCCTCGAGGCAGCCCGCGAACCCCAGCGACGTGCCGAAGCGGGAGGCGGACGAGGAGGTGGAGGTGGAGGAGGAGATGCCCTGGATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATACCGGGGCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCGCTTGCCTACGTAGGCGTGTCGTTTGTGCTCGCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCACCCAGAAGAAGCGAAGGGTGAGCAAGAATATTTTTTTGCTGAAGTCACTAGATGAGTTGTTTCAGAAGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCCGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCAAGT]
[+] EMBL AK072311 [GCCCTAATCGTCGCCACCCCGCCCGCCTCCATGGCGACCGCCACCTCCTTCTTCCAGCCGCTCACGACCCCCATCGCCGGCGCCGGCGCCGGCGGTGCCGCCCGGCTCCGTCGCGGGACCCTCGCACTGCCCTTCCCCACCCGCACGAGGCCTCTCCGGCGGCCGACGCCCCTCCTCGTCGCGCGGGCCAAGCGCCCCGGCAGCCGGACCGCGGCGGCCTCGAGGCAGCCCGCGAACCCCAGCGACGTGCCGAAGCGGGAGGCGGACGAGGAGGTGGAGGTGGAGGAGGAGATGCCCTGGATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATACCGGGGCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCGCTTGCCTACGTAGGCGTGTCGTTTGTGCTCGCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCACCCAGAAGAAGCGAAGGGTGAGCAAGAATATTTTTTTGCTGAAGTCACTAGATGAGTTGTTTCAGAAGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCCGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCAAGT]
consensusID : consensus_10965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 779 fasta sequence
[TCGGCACGAGGGANCTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG-TTGTTCGGAAA-AATCCTGTA-CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCA]
[-] EMBL CB682765 [TCGGCACGAGGGANCTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG TTGTTCGGAAA AATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCA]
[+] EMBL CB682764 [ GAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG TTGTTCGGAAA AATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACC ]
[+] EMBL AA750882 [ AGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAACGTTGCTGTGCAAACGTTTGTTCGGAAA AATCCTGTACCTTATCAGA ]
[+] EMBL AA751423 [ TGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAACGTTGCTGTGCAAACG TTGTTCGGAAA AATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATG ]
[+] EMBL BQ907825 [ GAAATAATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCNAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGTTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTaaaaaa ]
[+] EMBL AK104019 [ CAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTT ]
[+] EMBL AU031204 [ GAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTNAAGTTTTTGTTTCGACTTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10965#0 GCCCTAATCGTCGCCACCCCGCCCGCCTCCATGGCGACCGCCACCTCCTTCTTCCAGCCG 60
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 CTCACGACCCCCATCGCCGGCGCCGGCGCCGGCGGTGCCGCCCGGCTCCGTCGCGGGACC 120
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 CTCGCACTGCCCTTCCCCACCCGCACGAGGCCTCTCCGGCGGCCGACGCCCCTCCTCGTC 180
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 GCGCGGGCCAAGCGCCCCGGCAGCCGGACCGCGGCGGCCTCGAGGCAGCCCGCGAACCCC 240
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 AGCGACGTGCCGAAGCGGGAGGCGGACGAGGAGGTGGAGGTGGAGGAGGAGATGCCCTGG 300
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 ATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATACCG 360
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 GGGCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCGCTTGCCTACGTA 420
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 GGCGTGTCGTTTGTGCTCGCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCACC 480
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 CAGAAGAAGCGAAGGGTGAGCAAGAATATTTTTTTGCTGAAGTCACTAGATGAGTTGTTT 540
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 CAGAAGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGACAGGA 600
consensus_10965#1 ---------------------------TCGGCACGA-GGGANCTAATGGAGAAGACAGGA 32
* ** * ** ******************
consensus_10965#0 TTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTC 660
consensus_10965#1 TTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTC 92
************************************************************
consensus_10965#0 AACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCT 720
consensus_10965#1 AACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCT 152
************************************************************
consensus_10965#0 GAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTA 780
consensus_10965#1 GAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTA 212
************************************************************
consensus_10965#0 GTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG 840
consensus_10965#1 GTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG 272
************************************************************
consensus_10965#0 TTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCCGAGTTCTGCTCACGCGATGGCTCA 900
consensus_10965#1 TTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCA 332
*********************************** ************************
consensus_10965#0 CTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCAC 960
consensus_10965#1 CTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCAC 392
************************************************************
consensus_10965#0 ATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTG 1020
consensus_10965#1 ATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTG 452
************************************************************
consensus_10965#0 GGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCT 1080
consensus_10965#1 GGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCT 512
************************************************************
consensus_10965#0 TGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTC 1140
consensus_10965#1 TGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTC 572
************************************************************
consensus_10965#0 AGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTC 1200
consensus_10965#1 AGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTC 632
************************************************************
consensus_10965#0 TATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAA 1260
consensus_10965#1 TATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAA 692
************************************************************
consensus_10965#0 AGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTC 1320
consensus_10965#1 AGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTC 752
************************************************************
consensus_10965#0 CTTGTCTCTTCTGGAGGAAATGAACCAAGT 1350
consensus_10965#1 CTTGTCTCTTCTGGAGGAAATGAACCA--- 779
***************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||