cluster # 10966

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Oryza sativa
cluster # 10966 cluster # 10966 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10966#0 length = 502 sequences # 3

consensus_10966#1 length = 472 sequences # 4
consensus_10966#2 length = 363 sequences # 1

consensusID : consensus_10966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 502
fasta sequence

                              [CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTT-CCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCG-CCTGGTGCGC--GTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGAC-GGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAAT-AAACAT-TTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGCCCTTGCTGTAAAAAAAAAAAAAAAA]

[+] EMBL AA750711             [CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTT CCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCG CCTGGTGCGC  GTGCCTCAAGGAG CCCACAAGTCCGAGG CG CT CCGCGAGAAGGT CACTTCGC                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE040989             [                                    ccacacCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAATGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGAC GGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAAT AAACAT TTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGCCCTTGCTGTAAAAAAAAAAAAAAAA]
[+] EMBL BI796064             [                                                                                                                                                                                 gcaCTCAAGGAGCCCCACAAGTCCGA GCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGT GGCCGACAGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATGAAACCTCTGGGTGCCATGGTGACATAGTTCTTCC                                                                                                                                                                                     ]




>consensus_10966#0
CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAG
CAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCTTCTGGCGCG
CGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCTGGTGCGCGTGCCTCA
AGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGT
GGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTG
CCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGC
CGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAA
TTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGCCCT
TGCTGTAAAAAAAAAAAAAAAA

consensusID : consensus_10966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 472
fasta sequence

                              [CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGC-TGGATTTTGTGGTCAACGCTGAAGAATAAATTC-TTTCTGTGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATATTAAT]

[+] EMBL BE040919             [CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGCAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAATGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGC TGGATTTTGTGGTCAACGCTGAAGAATAAATTC TTTCTGTGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATATTAAT]
[+] EMBL OSC2926A             [        TTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAG AGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTTCTGTGACAAA  AAAAAAAAA                                  ]
[+] EMBL OSC28951             [        TTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGA NAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCNCCGNCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGNCTNCCGAGAGAAGGTCCACTTNGCCATCTNCAAGTGGGNCGACGGaa                                                                                                                                                                                                                                       ]
[+] EMBL AU063131             [                                                                                                      GGCGCGCGGCGGTGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGAC GAAGGCAGGAGAAGCCTACTGTCCGCACAGATGATGAATAAACATTTTGTNCCATGGTtga                                                                                                                                                                             ]




>consensus_10966#1
CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGCAGCGGAGGAGAT
CGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCGCGGCGGGGATGA
CCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCC
ACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACG
GCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGA
CATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACC
TGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTG
TGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATATTAAT

consensusID : consensus_10966#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCCAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTGTCATACAATGTTATTATCGTTGCTAATTGCCCTTGCTGTACTCGATCAATGATGCGAACT]

[+] EMBL CB678836             [CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCCAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGTTTGTCATACAATGTTATTATCGTTGCTAATTGCCCTTGCTGTACTCGATCAATGATGCGAACT]




>consensus_10966#2
CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCCTCAAGGAGCCCCACAAGTCCCAGGCCG
CCTCCCGCGAGAAGGTCCACTTCGCCATCTCCAAGTGGGCCGACGGCAAGCAGGAGAAGC
CGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTAC
AGATGTTTCAAAAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTA
TCTGGCTGGATTTTGTGGTCAACGCTGAAGAATAAATTCTTTCTGTGACAGTGGATCTGT
TTGTCATACAATGTTATTATCGTTGCTAATTGCCCTTGCTGTACTCGATCAATGATGCGA
ACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10966#0      CACTCCTCCTCCTTCCCCATTCCCCCAATCCCACACCGGCGGCGGCGGCGGCGGCGCGAG 60
consensus_10966#2      ------------------------------------------------------------
consensus_10966#1      ------------CCCCCTCCTTCCCATTCCCCATCCCACACCGGCGGCGGCGGCGCGAGC 48
                                                                                   

consensus_10966#0      CAGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCTTCTGGCGCG 120
consensus_10966#2      ------------------------------------------------------------
consensus_10966#1      AGCGGAGGAGATCGGCAGCGACGATGTCGGCGACGACGGCGGCGGTTCCCTTCTGGCGCG 108
                                                                                   

consensus_10966#0      CGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCC-TGGTGCGC--GTGCC 177
consensus_10966#2      ---------------------------CCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCC 33
consensus_10966#1      CGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCCGCCCTGGTGCGCCGGTGCC 168
                                                  ***************** ********  *****

consensus_10966#0      TCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCA 237
consensus_10966#2      TCAAGGAGCCCCACAAGTCCCAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCA 93
consensus_10966#1      TCAAGGAGCCCCACAAGTCCGAGGCCGCCTCCCGCGAGAAGGTCCACTTCGCCATCTCCA 228
                       ******************** ***************************************

consensus_10966#0      AGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTG 297
consensus_10966#2      AGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTG 153
consensus_10966#1      AGTGGGCCGACGGCAAGCAGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTG 288
                       ************************************************************

consensus_10966#0      GTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCG 357
consensus_10966#2      GTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCG 213
consensus_10966#1      GTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAAAAATGTTCTTGCCTTTCTTGCG 348
                       ************************************************************

consensus_10966#0      AGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAAT 417
consensus_10966#2      AGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAAT 273
consensus_10966#1      AGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGAAT 408
                       ************************************************************

consensus_10966#0      AAATTCTTTCTGTGACAGTGGATCTGTTTTTCATACAATGTTATTTTCGTTGCTAATTGC 477
consensus_10966#2      AAATTCTTTCTGTGACAGTGGATCTGTTTGTCATACAATGTTATTATCGTTGCTAATTGC 333
consensus_10966#1      AAATTCTTTCTGTGACANANNAAAAAAAAANNAANANATNNTANTTTTATTTTTATATAT 468
                       *****************    *          *    **  ** * *  **  **  *  

consensus_10966#0      CCTTGCTGTAAAAAAAAAAAAAAAA----- 502
consensus_10966#2      CCTTGCTGTACTCGATCAATGATGCGAACT 363
consensus_10966#1      TAAT-------------------------- 472
                          *