These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1224 fasta sequence [CGGTACGAGCAGGAGCAGGAGTACGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGTACGAGGGCGGGGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGACCCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTGGCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCGTTTCCGCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCGGGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATGGCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTGCCCTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA-ATGCCGGTCTCTCCGAGATGATATATGCTTGT-GGCCGGCTTTTTCTATGC-TTGTATTTGAGTTTTAT-AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCG-TTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGTGCATTGTCTGAAAAAAAAAA] [+] EMBL AK068931 [CGGTACGAGCAGGAGCAGGAGTACGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGTACGAGGGCGGGGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGACCCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTGGCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCGTTTCCGCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCGGGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATGGCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTGCCCTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA ATGCCGGTCTCTCCGAGATGATATATGCTTGT GGCCGGCTTTTTCTATGC TTGTATTTGAGTTTTAT AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCG TTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGT ] [+] EMBL BP184969 [ acGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGACCCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTGGCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCTTTTCCGCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCGGGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATGGCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATG ] [+] EMBL BI799343 [ CGATGAGAGAGGTAACAAAAGGTCCCC TGGCCTGGCAAATTGTGCCAGCTGCAACCAATGATGTT AACGGAATCGTCGA GCAACAGGTGTCGA CAGCACAATTCTGCAGTCGAGGA GCCGTTTCTGCTGCAAAT GCCCTGAATC CCGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCCATC ACCATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCACATGCCGGTCTCTCCGAGATGATATATGCTTGT GGCCGGCTTTTTCTATGC TTGTATTTGAGTTTTAT AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCGTTTGATTTACAGGTGACCCTGGGCCAACAGGCAGGTTAATTTC CAAaaaaaaaa ] [+] EMBL OSC4631 [ ATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA ATGCCGGTCTCTCCGAGATGATATATGCTTGTGGGCCGGCTTTTTCTATGCTTTGTATTTGAGTTTTATAAGCTTTGCCTTTNGCAG ] [+] EMBL AU165810 [ TGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA ATGCCGGTCTCTCCGAGATGATATATGCTTGT GGCCGGCTTTTTCTATGC TTGTATTTGAGTTTTAT AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCG TTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGTGCATTGTCTGAAAAAAAAAA] consensusID : consensus_10970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [AAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCANCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGTGGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCG] [+] EMBL BP184547 [AAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCANCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGTGGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCG] [+] EMBL C93630 [ ATGTGGACTTATGTGGGCAAACAAGCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTNCTGCAAATGGCCATGANTCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCANACTTGAGAAAAAGGAGGAGGATGCGTATCANTCAACANTCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTNTGATATGACCGGCTCTAGGATTCATG ] consensusID : consensus_10970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [GTGCNAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTNTGCAAATGGCCATGAATCGCAGTCGGGAGTGCGTGATGCTTGAGGGTTAGACTTGAGAAAGAGAGATNTACATACATAG] [+] EMBL AA750091 [GTGCNAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTNTGCAAATGGCCATGAATCGCAGTCGGGAGTGCGTGATGCTTGAGGGTTAGACTTGAGAAAGAGAGATNTACATACATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10970#0 CGGTACGAGCAGGAGCAGGAGTACGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGTACGAG 60 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GGCGGGGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGAC 120 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 CCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTG 180 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCGTTTCC 240 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCG 300 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATG 360 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGG 420 consensus_10970#1 ---------------------------------------------------AAGATCCGG 9 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 TATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCA 480 consensus_10970#1 TATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCA 69 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 TCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAAT 540 consensus_10970#1 TCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAAT 129 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 TGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGT 600 consensus_10970#1 TGGGGCGCAGTTGAAGGTCGACCTCCATCANCTGCTGAGTGCCATCATTGTGGTATTAGT 189 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCA 660 consensus_10970#1 GCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCA 249 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 TGTGGACTTATGTGGGCAAACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTG 720 consensus_10970#1 TGTGGACTTATGTGGGCAAACAAG------------------------------------ 273 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 CCCTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACA 780 consensus_10970#1 ------------------------------------CAGAACGGAATCGTCGAGGCAACA 297 consensus_10970#2 ------------GTGCNAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACA 48 ************************ consensus_10970#0 GGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAA 840 consensus_10970#1 GGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAA 357 consensus_10970#2 GGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTN-TGCAAATGGCCATGAA 107 ****************************************** **************** consensus_10970#0 TCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGC 900 consensus_10970#1 TCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGC 417 consensus_10970#2 TCGCAGTCGGGAGT-GCGTGATGCTTGAGGGTT-AGACTTGAGAAAGAG-AGATNTACAT 164 ************** ****************** ************ ** ** * consensus_10970#0 GTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGA 960 consensus_10970#1 GTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGA 477 consensus_10970#2 ACATAG------------------------------------------------------ 170 ** consensus_10970#0 CCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGT 1020 consensus_10970#1 CCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGT 537 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 GGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAA 1080 consensus_10970#1 GGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAA 597 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 TGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGT 1140 consensus_10970#1 TGGACGAGTTCAGCTTGAGCG--------------------------------------- 618 consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 AATCGTTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCAT 1200 consensus_10970#1 ------------------------------------------------------------ consensus_10970#2 ------------------------------------------------------------ consensus_10970#0 CAGTGCATTGTCTGAAAAAAAAAA 1224 consensus_10970#1 ------------------------ consensus_10970#2 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||