These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1070 fasta sequence [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT-GGT-GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTTGNTGTGGCCTTTATGCTTGTGCTTCATTAGCTGCATAGCTGCCAATTGGGCATCTATTGTCTGGATTTTAATGGAGATTGGTATCCTAGACAAAACCTGGTAGTTGTAATGCGTACATTACTGTACGCCGTATGCTTGGTAGNATCNTTTTGATAAAGGGATT] [+] EMBL AK061355 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT GGT GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCC ] [+] EMBL AK099153 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT GGT GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTT ] [+] EMBL CA765074 [ GAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTTTCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGGGGATGAATGAGGAGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCGGCAGCCAGGATGCTTACTGTCGTAAAACCAAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGTGGGTGGGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTTGNTGTGGCCTTTATGCTTGTGCTTCATTAGCTGCATAGCTGCCAATTGGGCATCTATTGTCTGGATTTTAATGGAGATTGGTATCCTAGACAAAACCTGGTAGTTGTAATGCGTACATTACTGTACGCCGTATGCTTGGTAGNATCNTTTTGATAAAGGGATT] [+] EMBL CB000290 [ CAAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCAATTTTTTTTTATATCAGAGTTATTTTTGTGTTGAATTTCCATCTGCAATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGT GGT GGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAaaaaa ] consensusID : consensus_10972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 536 fasta sequence [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTCGGGAGATTCAGATGTGCATACATATACTTCATGGAGTAATTGTGGAAACGATTTATCTGCACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCCGTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAAGTGTTTAT] [+] EMBL AY336991 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTCGGGAGATTCAGATGTGCATACATATACTTCATGGAGTAATTGTGGAAACGATTTATCTGCACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCCGTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAAGTGTTTAT] [+] EMBL AU163964 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTGCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCCTCTGGAACCGCGATTACGC ] [+] EMBL OSC1611 [ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCTG GACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCG CACCGACGGCTGGCCCTACGCCGTGCACCTCCTCGCCCACCTCTACCTCAACGANCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCG AAGAGGGAAAGGACGCGNGGCCGGAGCTCGCCGCCGTCTTGAGGATCGGGAAGTG ] consensusID : consensus_10972#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [TTCAGAACCTGATACATAGTTGTCTTAATAATCATTACAGATCCATCCAAACGGTTGGAGCTTGGATGCGCAGCCAGGATGCTTACTGTCGTAAAACCAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGTGGTGGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTAAAAAAAAAA] [+] EMBL BI813306 [TTCAGAACCTGATACATAGTTGTCTTAATAATCATTACAGATCCATCCAAACGGTTGGAGCTTGGATGCGCAGCCAGGATGCTTACTGTCGTAAAACCAAGGTTAAGACTAACCAGAAGCTCGATGCAAGCAACTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCCAGCATTACGGGCATCCCGCATGACTCTTAAGAAACCTATTTATCATATGATGCCAAGCCGAGATTGCCTTTTCTCCGGAAATCAGAGTTAGTTCAGTGTTGAATTTCCATCTGCATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATGGTTGCTTGTTGATATGGTTGGTGGTGGTTCTTGCCAGACTTACACTGAAGTAAATGACACTGCTTAGTGTCAACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAAATTGTTTCCCGTTTTACAGAAAGTCACTGTTAGTGTTGTTCTTGATTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10972#0 ATCTCGCCGCCGTCCACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTCGCCCCGCTCT 60 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 GCGACGACCTCTTCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACG 120 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 CCGTGCACCTCCTCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGA 180 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 AGTCGACGCCGCAGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCG 240 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 GGCAGTGCCTCTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGT 300 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 GGAGCCCTGAAATCGCCGACTTCGTGGCCGCCTTCCTAGAAAGCTACAGAAAGAGGATTT 360 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 TCCAGTTGTTGACTTCTGCATATTCCACAATCAGCGTTGCTGATGTGGCTCACTTCATGG 420 consensus_10972#2 ------------------------------------------------TTCAGAACCTGA 12 consensus_10972#1 ----------------------------------------------ATCTCGCCGCCGTC 14 ** * consensus_10972#0 GGATGAATGAGG-AGGATGCTACTAACTATGCCATGCAAAACGGTTGGAGCTTGGATGCG 479 consensus_10972#2 TACATAGTTGTC-TTAATAATCATTACAGATCCATCCAAA-CGGTTGGAGCTTGGATGCG 70 consensus_10972#1 CACGCCGCCCTCGCCGGCAAGTCCTACTCCTCCGTC--GCCCCGCTCTGCGACGACCTCT 72 ** ** * * * * * * consensus_10972#0 GCAGCCAGGATGCTTACTGTCGTAAAACCA---AAGGTTAAGACTA-ACCA-GAAGCTCG 534 consensus_10972#2 -CAGCCAGGATGCTTACTGTCGTAAAACCA---A-GGTTAAGACTA-ACCA-GAAGCTCG 123 consensus_10972#1 TCCTCCAGGCCGCGTCCCGGGGCGCCGCCACCGACGGCTGGCCCTACGCCGTGCACCTCC 132 * ***** ** * * * * *** * ** * *** ** * * *** consensus_10972#0 ATGCAAGCAAA--CTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCC 592 consensus_10972#2 ATGCAAGCAA---CTTCAGCGATTAACTGAATGCGTCTTCCACCTGGAGCACTAAAGTCC 180 consensus_10972#1 TCGCCCACCTCTACCTCAACGACCTGAACAGCGCGAGGTTTCTGTGGAAGTCGACGCCGC 192 ** * * *** *** * *** * **** * * * consensus_10972#0 AGCA--TTACGGGCATCCCGCATGA-CTCTTAAGAAACCTATTTATCATATGATGCCAAG 649 consensus_10972#2 AGCA--TTACGGGCATCCCGCATGA-CTCTTAAGAAACCTATTTATCATATGATGCCAAG 237 consensus_10972#1 AGGAGGCGAAGGACGCGCGGCCGGAGCTCGCCGCCGTCTGGAGGATCGGGCAGTGCC--T 250 ** * * ** * * ** ** *** * *** **** consensus_10972#0 CCGAGATTGCCTTTTCTCCGGAAATCA-GAGTTAGTTCAGTG--TTGAATTTCCATCTGC 706 consensus_10972#2 CCGAGATTGCCTTTTCTCCGGAAATCA-GAGTTAGTTCAGTG--TTGAATTTCCATCTGC 294 consensus_10972#1 CTGGAACCGCGATTACGCGGGCGTCTACGCGGCCGCGCAGGGGTTCGAGTGGAGCCCTGA 310 * * * ** ** * * ** * * * * *** * * ** * *** consensus_10972#0 AATTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATG-GTTGCTTGTTGATATGGT 765 consensus_10972#2 A-TTGATTTCTGGTTAGCGACCTTAGCCTTTCTCTGTAATG-GTTGCTTGTTGATATGGT 352 consensus_10972#1 AATCGCCGACTTCGTGGCCGCCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTC 370 * * * ** * ** **** ** * ** * ** **** * * consensus_10972#0 TGGTGGTGGTTCTTGCCAGACTTACACT----GAAGTAA--ATGACACTGCTTAGTGTCA 819 consensus_10972#2 TGGTGGTGGTTCTTGCCAGACTTACACT----GAAGTAA--ATGACACTGCTTAGTGTCA 406 consensus_10972#1 GGGAGATTCAGATGTGCATACATATACTTCATGGAGTAATTGTGGAAACGATTTATCTGC 430 ** * * * ** ** ** *** * ***** ** * * ** * * consensus_10972#0 ACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAA--ATTGTTTCCCGTTTTACA 877 consensus_10972#2 ACTCGTAAGTTAACGTTGTTTTTTGAAGTATGAGTTGAAA--ATTGTTTCCCGTTTTACA 464 consensus_10972#1 ACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCC 490 ** * * * * * ** * ** * * ** * * ** * * * consensus_10972#0 GAAAGTCACTGTTAGTGTTGTTCTTGATTTGNTGTGGCCTTTATGCTTGTGCTTCATTAG 937 consensus_10972#2 GAAAGTCACTGTTAGTGTTGTTCTTGATTAAAAAAAAAA--------------------- 503 consensus_10972#1 GTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAAGTGTTTAT-------------- 536 * *** ** *** ** * consensus_10972#0 CTGCATAGCTGCCAATTGGGCATCTATTGTCTGGATTTTAATGGAGATTGGTATCCTAGA 997 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 CAAAACCTGGTAGTTGTAATGCGTACATTACTGTACGCCGTATGCTTGGTAGNATCNTTT 1057 consensus_10972#2 ------------------------------------------------------------ consensus_10972#1 ------------------------------------------------------------ consensus_10972#0 TGATAAAGGGATT 1070 consensus_10972#2 ------------- consensus_10972#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||