These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1202 fasta sequence [TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAGCAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCCGACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGGGTCGTTCGGGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGGGTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGGCGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCCTCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTCTGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGGTGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGGCCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGAAGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC-GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT-AAGG-GGAGTTAATT-AAATGTACATCATTGGTCGTGACAAAAAAAAAATGCCGTTGGTTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AB028131 [TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAGCAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCCGACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGGGTCGTTCGGGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGGGTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGGCGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCCTCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTCTGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGGTGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGGCCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGAAGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACA CGCCGCCGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGT ] [+] EMBL AK107294 [TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAGCAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCCGACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGGGTCGTTCGAGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGGGTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGGCGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCCTCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTCTGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGGTGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGGCCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGAAGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCCGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCAT ] [+] EMBL BI797987 [ gcGCGGCGAC GT GCGAA CTGTGATGACGAAGGACACC GCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGCCAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGC AAAGGTTCTCATGTTTCAAGGCGGAGTTAATTCAAATGTAaaaaaaaaa ] [+] EMBL BI798639 [ CGAAGGACACC GC GCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTACTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAACTGCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGC AAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTAaaaaaaaaa ] [+] EMBL BI795285 [ GGACTACTTCTACGGCTGGAACAGCGCC CTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAAC GCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTTTATCCGTGGATCCAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGGTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTTTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGTGACAAAAAAAAAA ] [+] EMBL C99324 [ CGGCCNTGATGTAAGCTCAATCAAATCANCCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCNCTTTAGTTCGTTTTTTATCCGTGGATCAAATTAGTTCNCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGNCAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGCCCTCATGGANCCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGTGACATTGCTTAATTGCCGTTGGTTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU163962 [ CGTCGAAACAGTTTTAAATTTTNCTAGACAAATGAATGTCGTCGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGGTTCTCATGTTT AAGG GGAGTTAATT AAATGTACATCATTGGTCGTGAAAAAAAAA ] consensusID : consensus_10973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [CGAGGCCGGACTACTTTTACGGCTGGGACAGCGCCCCTGGCGGCGTCTCGCTGGAGCGGCATCGGCGGCAACCCGCCGCTGCCCCCGGAGCAACGCCCTGGCAGGGCCTCATCGACAGCCAGCTCGGCCCTGATGTAAGCTCCATCCAATCCAACCCTGCCCAGGTTGGAGAGAGATCTCATCCCGAAGTTGTTGCTAGCTTCTTGGAATAGATTGTTTCTTGCAGCTTGCATCGATGCGCTTTAGTTCCGTTTGTTTGATCCGTGGGATGCCAATTGAGTTGCAGCTCCTTTGGGAGAAAATTGCGTGCGAAACCAGTGTTTGAAATTTTGCTGAGGACCAATAGAATAGTGCGTGCGTGCGTGCATGCGTGCGCTGCGTTTGACCCGTGAATTAGCTTGGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCCAGCCAAAGGTTTTCATGTTTAAGGGGAGTTAATTAAATGTACCTCCTTGGTCGTGAAAAAAAAAA] [+] EMBL BI794941 [CGAGGCCGGACTACTTTTACGGCTGGGACAGCGCCCCTGGCGGCGTCTCGCTGGAGCGGCATCGGCGGCAACCCGCCGCTGCCCCCGGAGCAACGCCCTGGCAGGGCCTCATCGACAGCCAGCTCGGCCCTGATGTAAGCTCCATCCAATCCAACCCTGCCCAGGTTGGAGAGAGATCTCATCCCGAAGTTGTTGCTAGCTTCTTGGAATAGATTGTTTCTTGCAGCTTGCATCGATGCGCTTTAGTTCCGTTTGTTTGATCCGTGGGATGCCAATTGAGTTGCAGCTCCTTTGGGAGAAAATTGCGTGCGAAACCAGTGTTTGAAATTTTGCTGAGGACCAATAGAATAGTGCGTGCGTGCGTGCATGCGTGCGCTGCGTTTGACCCGTGAATTAGCTTGGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCCAGCCAAAGGTTTTCATGTTTAAGGGGAGTTAATTAAATGTACCTCCTTGGTCGTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10973#0 TCCTGCTCCTGCGGTGGGCGCCGCGCCACCGGTGGTGCCGGCGCTGTCGTCGGCGATCAG 60 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 CAAGCTGCTGCAGTCGGAGCCCATGGCGGCGCCGTGCGCGGACTTCCCCAACGTGCTCCC 120 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 GACCTTCGTGTCCACCGGGTTCGAGCTCCCCGCCGCCGCCGGCGACCGCCTCTCGCTGGG 180 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 GTCGTTCGGGGCGTTCGGCAACCTGTCGGCGGCGGTGGCGGCTCCCGGCGGTGGTGGTGG 240 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 GTCGTCGACGACCACGTCGTTCATGGACATGCTGAGGGGAGTTGGAGGGCTTTTCGACGG 300 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 CGTCGGCAACAGCCATCAGATGGGCGGCAATGGCGGCGGCGGAGGCAGCTACTACGCGCC 360 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 TCTCATCACCGGCGCCGGCAATGGCATGCTGATGCCGCCGCCGCCGCTGCCGCCATTTTC 420 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 TGGTTCTCTGATGCAGCATGGGATGCAGGGGCTGTTCGCCAATCATGCGATGGGAGGAGG 480 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 TGGTGGTGGAGTGATGAACGCCGGCGAGGACGGCAGCGTGATGGCGGGGCTGGGAGGAGG 540 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 CCAGTGGCCGCCGGCGCTTGGTGGTGCAGACGAGCAGCAGGGCGGCGGCGACGGTGGCGA 600 consensus_10973#1 ------------------------------------------------------------ consensus_10973#0 AGCTGTGATGACGAAGGACACCGGCGGCGGCGCATCGTCGTCGGCGTCGAGGCCGGACTA 660 consensus_10973#1 -----------------------------------------------CGAGGCCGGACTA 13 ************* consensus_10973#0 CTTCTACGGCTGGAACAGCGCCGCTGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAA 720 consensus_10973#1 CTTTTACGGCTGGGACAGCGCCCCTGGCGGCGTC-TCGCTGGAG-CGGCATCGGCGGCAA 71 *** ********* ******** *********** ********* *************** consensus_10973#0 CGCCGCCGCTGCCACCGGAGCAACGCCATGGCAGGGCCTCATCGACAGC-AGCTCGGCCA 779 consensus_10973#1 C-CCGCCGCTGCCCCCGGAGCAACGCCCTGGCAGGGCCTCATCGACAGCCAGCTCGGCCC 130 * *********** ************* ********************* ********* consensus_10973#0 TGATGTAAGCTCAATCAAATC-AACCATGCCAAGGTTGGAGAGAGATCTCATCCAGAAGT 838 consensus_10973#1 TGATGTAAGCTCCATCCAATCCAACCCTGCCCAGGTTGGAGAGAGATCTCATCCCGAAGT 190 ************ *** **** **** **** ********************** ***** consensus_10973#0 TGTTGCTAGCTTCTTGGAAT-GATT-TTTCTT-CAGCTT-CATCGAT-CGCTTTAGTTC- 892 consensus_10973#1 TGTTGCTAGCTTCTTGGAATAGATTGTTTCTTGCAGCTTGCATCGATGCGCTTTAGTTCC 250 ******************** **** ****** ****** ******* *********** consensus_10973#0 GTTTTTT--ATCCGTGGA---TCAAATTAGTT----CGCTCTTTGGAAAAATTCGT---C 940 consensus_10973#1 GTTTGTTTGATCCGTGGGATGCCAATTGAGTTGCAGCTCCTTTGGGAGAAAATTGCGTGC 310 **** ** ******** *** * **** * * ** *** *** * * * consensus_10973#0 GAAACA---GTTTTAAATTTTGCTA--GACAAAT-GAATGTCGTCGTCGT-----CAT-C 988 consensus_10973#1 GAAACCAGTGTTTGAAATTTTGCTGAGGACCAATAGAATAGTGCGTGCGTGCGTGCATGC 370 ***** **** ********** *** *** **** * *** *** * consensus_10973#0 GT-CGCT-CGTTT-ACCTGT-AATTAGCTTGG-AGTTGGGGTTGTTTGATTGACCTCATG 1043 consensus_10973#1 GTGCGCTGCGTTTGACCCGTGAATTAGCTTGGGAGTTGGGGTTGTTTGATTGACCTCATG 430 ** **** ***** *** ** *********** *************************** consensus_10973#0 GAACCATGCAAAAGGTTCTCATGTTTAAGGGGAGTTAATTAAATGTACATCATTGGTCGT 1103 consensus_10973#1 GAACCCAGCCAAAGGTTTTCATGTTTAAGGGGAGTTAATTAAATGTACCTCCTTGGTCGT 490 ***** ** ******* ****************************** ** ******** consensus_10973#0 GACAAAAAAAAAATGCCGTTGGTTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1163 consensus_10973#1 GAAAAAAAAAA------------------------------------------------- 501 ** ******** consensus_10973#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1202 consensus_10973#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||