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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1448 fasta sequence
[CCTACCGCCTCCAGATCCCACCCTCTCGCCACCGCGACGCTTGCCGGAGGTTCGGTTCCAGCCATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAGTCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCTGTTGCATATGGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCTTGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTGGAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGACAGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAA-TCAGGTGGAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTAGTTCCAAGTCAGGCCGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGTGAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTGCCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG-TTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAA-CCTTGTGATGTTTATCAGACATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCA-AGGAAATAATACAATCAACTTTTGAAAAAAAA]
[+] EMBL AK107615 [CCTACCGCCTCCAGATCCCACCCTCTCGCCACCGCGACGCTTGCCGGAGGTTCGGTTCCAGCCATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAGTCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCTGTTGCATATGGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCTTGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTGGAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGACAGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAA TCAGGTGGAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTAGTTCCAAGTCAGGCCGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGTGAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTGCCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG TTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAA CCTTGTGATGTTTATCAGACATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCA AGGAAATAATACAATCAAa ]
[+] EMBL C99374 [ ATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAGTCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCTGTTGCATATNGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCTTGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTGGAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGACAGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAA TCAGGTGGAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTAAACCCGCACTTGTGAAGCAAGTTCTGCAG TAATTCCAAGTCAAGNCGAGCAAANGCA ]
[+] EMBL C99373 [ AACAACGATGTTGATCAGATGGAGTTGGACGAAGACAAGATTTGGAATTCAGNTGGAGATTGAGGAGNTGAATGATCAGCAGCAACCAGTTGACCACAAGTTGGACCAAATTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTNGTTCCAAGTCAGGCCGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGTGAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTGCCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAAAA ]
[+] EMBL AU174497 [ TTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATG ]
[+] EMBL BI803574 [ CAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGC AGCGCCGTACC AGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGATGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG TTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAA CCTTGTGATGTTTATCAGACATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCACAGGAAATAATAC ATCAACTTTTGAAAAAAAA]
[+] EMBL BI803958 [ gcaAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGT CAGTTCTCGAAGATGATGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG TTGTCTGTGGGACAGTTTCAGTTTACCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCCTTGTGATGTTTATCAGACATAATTTC GGTTGTTAAATTTAGTGATGGTGGTCC AGGAAATAATACAATCAACTT ]
consensusID : consensus_10979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence
[GCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGACATAAAAAAAAAAAGAAAAAAAA]
[+] EMBL AU174498 [GCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGACATAAAAAAAAAAAGAAAAAAAA]
[+] EMBL AA749737 [ CAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGA NNCGAAGACTATACCGTTGGTGGTGCCAGCAAGCG CGTACCAAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10979#0 CCTACCGCCTCCAGATCCCACCCTCTCGCCACCGCGACGCTTGCCGGAGGTTCGGTTCCA 60
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GCCATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAG 120
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 TCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCT 180
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GTTGCATATGGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCT 240
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 TGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTG 300
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGAC 360
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 AGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAATCAGGTG 420
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGT 480
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAG 540
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 ATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAA 600
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 TGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAG 660
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 AGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTAGTTCCAAGTCAGGC 720
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 CGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGT 780
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTG 840
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 CCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGAT 900
consensus_10979#1 ------------------------------------------------------------
consensus_10979#0 GCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGC 960
consensus_10979#1 ----------------------------------------------------------GC 2
**
consensus_10979#0 AGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCC 1020
consensus_10979#1 AGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCC 62
************************************************************
consensus_10979#0 ATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTAC 1080
consensus_10979#1 ATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTAC 122
************************************************************
consensus_10979#0 TCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGC 1140
consensus_10979#1 TCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGC 182
************************************************************
consensus_10979#0 AAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAG 1200
consensus_10979#1 AAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAG 242
************************************************************
consensus_10979#0 ATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTC 1260
consensus_10979#1 ATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTC 302
************************************************************
consensus_10979#0 GATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATG 1320
consensus_10979#1 GATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATG 362
************************************************************
consensus_10979#0 TATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGAC 1380
consensus_10979#1 TATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGAC 422
************************************************************
consensus_10979#0 ATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCAAGGAAATAATACAATCAACTTTTG 1440
consensus_10979#1 ATAAAAAAAAAAAGAAAAAAAA-------------------------------------- 444
**** * ***
consensus_10979#0 AAAAAAAA 1448
consensus_10979#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||