These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1419 fasta sequence [TCGTCGCCCCCGCAATTTCGCGGTCTCCTCCTCCTCCTCCTCCCCTCGTCTCCACCTCCCAATCCGGCGATTCCCCAATCCTCCACCACCTCCTCACCCACCCCCCCGACGACCACCTCCCCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCCCCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGCGTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAGAGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAGTTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTCGGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGAGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTGAAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGAGGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCTCATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCACAAGTC-TTTTTTTTTTTGGGTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAACTAGTACCTCTATCGCAATAGAAGCAACTGTAGCTGATGATTCCGGTAATCCGGTTTACTTTCGACTGAATGCTGGATGGAAATTGCTCCTCAAGCTGAGGGAATTAAAAAAAAAAAAACA] [+] EMBL AK068413 [TCGTCGCCCCCGCAATTTCGCGGTCTCCTCCTCCTCCTCCTCCCCTCGTCTCCACCTCCCAATCCGGCGATTCCCCAATCCTCCACCACCTCCTCACCCACCCCCCCGACGACCACCTCCCCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCCCCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGCGTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAGAGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAGTTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTCGGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGAGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTGAAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGAGGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCTCATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCACAAGTC TTTTTTTTTTTGGGTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAACTAGTACCTCTATCGCAATAGAAGCAACTGTAGCTG ] [+] EMBL CB663281 [ ACCTCCCCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCCCCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGCGTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAGAGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAGTTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTCGGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAAGAGGACAACTTGCGGGTAATGTA ] [+] EMBL AU069932 [ CTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAGCTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAACTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTTAGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATGGAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGA ] [-] EMBL CB663282 [ ACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATAATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGACAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAGAGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTGAAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGAGGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCTCATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCACAAGTCTTTTTTTTTTTTGGGTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAAATAGTACCTCTATCGCAATAGAAGCAACTGTAGCTGATGATTCCGGTAATCCGGTTTACTTTCGACTGAATGCTGGATGGAAATTGCTCCTCAAGCTGAGGGAATTAAAAAAAAAAAAACA] [+] EMBL D43447 [ TGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGACTTTNNAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTCCTNCAGCTCTGAAGTTGGGCGAACTTCATTTGTCCGACAGTTAGAGGCAG TTTTCAaca ] consensusID : consensus_10981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence [TCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTCGTGGCTTGATGAAAGAAAAGGTGAGATGTTTACCTTACTTTTAGTTATTGTACTGCGTTTCTCTTTTT-CGCCTCTCATGTTCCCTCCATTCCCCACCTCATTTCAATCCTGCATTGAGTAATTATTCTCATTTTATTTATGGATGGTAGAACATGAATAGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTTAGCAGTTACAGTAAACGTTTCACATGATTGAACTTTTGGTAGAGGCAACTGATACTAATTGATACATGTGCATGGAAATGCTATTGGCGCTTGCATATCAGTTCTGCATATGGAGCTGACTTTGTCTGGCACTCATATCAGTTCTGCATACCCAGCTGAGTTTCAGTCCAAGTTCTGGCTGAGAAAAGAAGTATTTCTCCTGTATATTCAGAACCCTGAAATATCTAGGTGTTAAATAATTTATTTACTTCTGTCACCTACATCTATAATTGAGTGAAAAAGGTGGGTATTGCANGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATCTTCACATTGACACAAGCCT] [+] EMBL D42420 [TCTATTGGCCCTGGAGAGTGCTGGACTTTTCAAGACTCGTGGCTTGATGAAAGAAAAGGTGAGATGTTTACCTTACTTTTAGTTATTGTACTGCGTTTCTCTTTTT CGCCTCTCATGTTCCCTCCATTCCCCACCTCATTTCAATCCTGCATTGAGTAATTATTCTCATTTTATTTATGGATGGTAGAACATGAATAGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTT ] [+] EMBL CF308820 [ AGTGCTGGACTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTGAAATGTTTGCGTTACTTTTAGTTATTGTACTGCGTTTGTTTTTTTGTTCCTCTCATGTTCCCTCCATTCCCCACGTCATTTCAATGCTGCATTGAGTAATTATTCTCATTTTATTTATGGATGGTAGAACATGAATGGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTTAGCAGTTACAGTAAACGTTTCACATGATTGAACTTTTGGTAGAGGCAACTGATACTAATTGATACATGTGCATGGAAATGCTATTGGCGCTTGCATATCAGTTCTGCATATGGAGCTGACTTTGTCTGGCACTCATATCAGTTCTGCATACCCAGCTGAGTTTCAGTCCAAGTTCTGGCTGAGAAAAGAAGTATTTCTCCTGTATATTCAGAACCCTGAAATATCTAGGTGTTAAATAATTTATTTACTTCTGTCACCTACATCTATAATTGAGTGAAAAAGGTGGGTATTGCANGTACTCTTCTGCAGCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATCTTCACATTGACACAAGCCT] consensusID : consensus_10981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [TAGATAGCGAGAACTATAAGTTGGATGAGTNCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCCCAAGTCTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094696 [TAGATAGCGAGAACTATAAGTTGGATGAGTNCAGTTCATGGCCATCTAATGGTGTTGTAAAATGTAAATTGAATGCCCCAAGTCTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10981#0 TCGTCGCCCCCGCAATTTCGCGGTCTCCTCCTCCTCCTCCTCCCCTCGTCTCCACCTCCC 60 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 AATCCGGCGATTCCCCAATCCTCCACCACCTCCTCACCCACCCCCCCGACGACCACCTCC 120 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 CCCACCTCGCCCAACCACGCGGCAGAAGCAAGTCAAGCCAAGCCGTACGGCACCCCACCC 180 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 CCACCCCGCGCAATGCCGGGCCTCGCCGCCGACCAGGACACCGTCTCGCTGGTGCGCCGC 240 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 GTCTCCCGCGCCCTCAACCGCCGCCTCACCGACCTCGTCGGCCTCCTCTTCCACCACAAG 300 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 AGCGCCGGATCCCTCGGGGCCGTCGCCGGGTTCGCCATCGCTGTCGTGTTCGCGTGGAAG 360 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 TTCCTGCGGTCGTCGCCGGCCAGGCCGCGCCGCCCCCCCGGACCGAAGCGGCCGCTCGTC 420 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 GGCCCTGCTGCCCCCGATTCCGCCGCTCGCGATGCGGCCGAGCCTGCCAATCCTGGGAAG 480 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 CTGACGACACGGCAAATCGTGGTGAAGCGACTGGGCGGGTGTAGAAAGGTGACTTGCCAA 540 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 CTGCTTGGTGTTGTCTTTGAGGAGATAACTCCTCAGGAGCTTCAGACACATGCCACTGTT 600 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 AGACCTTCAGTGGTGGAACTACTACTCGAAATAGCCAAATACTGTGATTTGTATCTGATG 660 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 GAAACTGTACTTGATGATAAGAGTGAGGAGAATGCTCTATTGGCCCTGGAGAGTGCTGGA 720 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 -----------------------------------TCTATTGGCCCTGGAGAGTGCTGGA 25 consensus_10981#0 CTTTTCAAGACTGGTGGCTTGATGAAAGAAAAGGTACTCTTCTGCAGCTCTGAAGTTGGG 780 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 CTTTTCAAGACTCGTGGCTTGATGAAAGAAAAGGTGAGATGTTTA---CCTTACTTTTAG 82 consensus_10981#0 CGAACTTCATTTGTTCGACAGTTAGAGGCAGATTTTCACATTGACACAAGCCTCGATATA 840 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 TTATTGTACTGCGTTTCTCTTTT-----TCGCCTCTCATGTTCCCTCCATTCCCCACCTC 137 consensus_10981#0 ATTTCCCAACTATCTCGGTTCATTCGGTGCCAACTCTTTGTTTCCTCAATAGAAGGAGGA 900 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ATTTCAATCCTGCATTGAGTAATT--ATTCTCATTTTATTTATGGATGGTAGAACATGAA 195 consensus_10981#0 CAACTTGCGGGTAATGTATTTAACTCTCCAAGCCTTGAGCAGTTCTTCTCATGAAACCAG 960 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 TAGCCTGTTTTCACCAAATTCATAGGAGGATACAGATGTTAGCAGTTACAGTAAACGTTT 255 consensus_10981#0 AGCATAATGGGGGTTCGTATCTAAACGTGGCGACTACAGCAGCACGTGTTTCAAGCTTTG 1020 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 CACATGATTGAACTTTTGGTAGAGGCAACTGATACTAATTGATACATGTGCATGGAAATG 315 consensus_10981#0 AAGGTGTCATGTGATTCTGTGACACCAATCTAGTAGTAGAATCCTCAGGTACATAATGGA 1080 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 CTATTGGCGCTTGCATATCAGTTCTGCATATGGAGCTGACTTTGTCTGGCACTCATATCA 375 consensus_10981#0 GGCATATGCGGTTGGCACATATGTTGTGTGCTATGTTGTGCCTGTTGTTCCCATCTTTCT 1140 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 GTTCTGCATACCCAGC---TGAGTTTCAGTCCAAGTTCTGGCTGA-GAAAAGAAGTATTT 431 consensus_10981#0 CATAGCTGTATCTTAGCCTCATAGATAGCGAGAACTATAAGTTGGATGAGTGCAGTTCAT 1200 consensus_10981#2 ---------------------TAGATAGCGAGAACTATAAGTTGGATGAGTNCAGTTCAT 39 consensus_10981#1 CTCCTGTATATTCAGAACCCTGAAATATCTAGGTGT-TAAAT--AATTTATTTACTTCT- 487 * *** * ** * *** * ** * * *** consensus_10981#0 GGCCATCTAATGGTGTTGTAAAATGTAAAT--TGAATGCCACAAGTCTTTTTTTTTTTGG 1258 consensus_10981#2 GGCCATCTAATGGTGTTGTAAAATGTAAAT--TGAATGCCCCAAGTCTTTTTTTTTTTTA 97 consensus_10981#1 -GTCACCTACATCTATAATTGAGTGAAAAAGGTGGGTATTGCANGTACTCTTCTGC---A 543 * ** *** * * * * ** *** ** * ** ** * ** * consensus_10981#0 GTTTATTAGTTTCTGTAGCTTTCATTCCATGACGAGCGAACTAGTACCTCTATCGCAATA 1318 consensus_10981#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 134 consensus_10981#1 GCTCTGAAGTTGGGCGAACTTCATTTGTTCGACAGTTAGAGGCAGATCTTCACATTGACA 603 * * * consensus_10981#0 GAAGCAACTGTAGCTGATGATTCCGGTAATCCGGTTTACTTTCGACTGAATGCTGGATGG 1378 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 CAAGCCT----------------------------------------------------- 610 consensus_10981#0 AAATTGCTCCTCAAGCTGAGGGAATTAAAAAAAAAAAAACA 1419 consensus_10981#2 ----------------------------------------- consensus_10981#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||