These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 959 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATTGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGAACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCTTCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATATCCCTCTCCTCTCCTCTCCTCCCGCCGCCANGGCGTCGCAGTCGATGTGAGTGGGTCGAGGTCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAATCACAGCTTTTGTATGCTCAT] [-] EMBL CF312502 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGCATGTTTATTTCATCGACT ] [-] EMBL AU162382 [ TTTTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGC ] [-] EMBL CA765570 [ TTTTTCTGTTCAACACAATGAAATGCAATTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAGTTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGAT ] [+] EMBL CB627110 [ TTTAACACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAATTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATTGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGAACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCTTCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATATCCCTCTCCTCTCCTCTCCTCCCGCCGCCANGGCGTCGCAGTCGATGTGAGTGGGTCGAGGTCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAATCACAGCTTTTGTATGCTCAT] [-] EMBL AK105134 [ AACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCTTCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATATCCCTCTCCTCTCCTCTCCTCCCGCCGCCA CGCGTCGCAGTCGAGGTGAGTGGGTCGAGGTCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAAT ] [-] EMBL OSR04781A [ AATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGC ] consensusID : consensus_10988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CTCGAGTTTTTTTTTTTTTTTTTTTGGTGGTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACACGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCG] [+] EMBL CA754744 [CTCGAGTTTTTTTTTTTTTTTTTTTGGTGGTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACACGATTCCATCACCAAACTCCTCATTGATAATTTCCTTGATGCTCTCTCCAAAATGCATAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCCGCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGTACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCG] consensusID : consensus_10988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [TTTTTTTCAGAAAATATCTTTTCTGTTCAAACAATGAAATGGAATTTAACACTTCATGTGTTGTTTATTAATTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATGGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAAACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATGTGATAATTTCCTTGATGCTCTCTCCAAAATGATAACAGTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGGAACGGG] [-] EMBL BI797696 [TTTTTTTCAGAAAATATCTTTTCTGTTCAAACAATGAAATGGAATTTAACACTTCATGTGTTGTTTATTAATTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAACTGTATCTCTGTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCATCGACTATGGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGATACATCATTTTTCCCACAAACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACATCATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCACGCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGACATGATTCCATCACCAAACTCCTCATGTGATAATTTCCTTGATGCTCTCTCCAAAATGATAACAGTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGCGGGAACGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10988#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_10988#2 ------------------------------------------------------------ consensus_10988#1 ------------------------------------------------------------ consensus_10988#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTCAACACAATGAAATGCAATTTAAC 120 consensus_10988#2 ---------TTTTTTTCAGAAAATATCTTTTCTGTTCAA-ACAATGAAATGGAATTTAAC 50 consensus_10988#1 -------------------------------------------CTCGAGTTTTTTTTTTT 17 * * * *** consensus_10988#0 ACTTCATGTGTTGTTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAAC 180 consensus_10988#2 ACTTCATGTGTTGTTTATTAA-TTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAAC 109 consensus_10988#1 TTTTTTT-TGGTGGTTATTAACTTTATTCAATGATAGAAGTAGTAAAGGTGACATCGAAC 76 ** * ** ** ******* ************************************** consensus_10988#0 TGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCAT 240 consensus_10988#2 TGTATCTCTG-TTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCAT 168 consensus_10988#1 TGTATCTCTGCTTAAACAATTTATTCATGTATACATCATTACAAAGTATGTTTATTTCAT 136 ********** ************************************************* consensus_10988#0 CGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGA 300 consensus_10988#2 CGACTATGGGGAGTAAAAAACATGCTCGATTCTATTCAATCCACAAGCAGAAGCAGATGA 228 consensus_10988#1 CGACTATTGGGAGTAAAAAACATGCTCGATTCTATTCAATTCACAAGCAGAAGCAGATGA 196 ******* ******************************** ******************* consensus_10988#0 TACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACAT 360 consensus_10988#2 TACATCATTTTTCCCACAA-ACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACAT 287 consensus_10988#1 TACATCATTTTTCCCACAACACCAGCCATCTCAAGATGTCTTGCGGGTCAGCCTAGACAT 256 ******************* **************************************** consensus_10988#0 CATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCAC 420 consensus_10988#2 CATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCAC 347 consensus_10988#1 CATATGATCAGATCTCTGCTCACTGTAAGGAAGATATTTCCCATCAAATGTGACCACCAC 316 ************************************************************ consensus_10988#0 GCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGA 480 consensus_10988#2 GCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGA 407 consensus_10988#1 GCGATCTTTTCCATCAGCACCTTGTACCTTGTCAACCGAACAGTAGAAGTCTATAGCTGA 376 ************************************************************ consensus_10988#0 CATGATTCCATCACCAAACTCCTCAT-TGATAATTTCCTTGATGCTCTCTCCAAAATGCA 539 consensus_10988#2 CATGATTCCATCACCAAACTCCTCATGTGATAATTTCCTTGATGCTCTCTCCAAAATG-A 466 consensus_10988#1 CACGATTCCATCACCAAACTCCTCAT-TGATAATTTCCTTGATGCTCTCTCCAAAATGCA 435 ** *********************** ******************************* * consensus_10988#0 TAACAGCTTCATTCAATCTGTAGATTGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGC 599 consensus_10988#2 TAACAG-TTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGC 525 consensus_10988#1 TAACAGCTTCATTCAATCTGTAGATGGCGGGCTCGTGGACGATGTCCGGGTGGTAGGAGC 495 ****** ****************** ********************************** consensus_10988#0 GGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGAACGGCCGCCC 659 consensus_10988#2 GGGAACGGG--------------------------------------------------- 534 consensus_10988#1 GGAACGGCGGCTCCATCATGAGCGCGACGAGGTCGTCGGTGAGCCCCGGCACGGCCGCCC 555 ** * * * consensus_10988#0 GCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGT 719 consensus_10988#2 ------------------------------------------------------------ consensus_10988#1 GCAGCGCCGGCGCCGTCTCCGGCTTCAGCTGCGCCTGCCGCCGCAGCAGCTGCGCCACGT 615 consensus_10988#0 ACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCGCCT 779 consensus_10988#2 ------------------------------------------------------------ consensus_10988#1 ACACGTTGGTCAGCCCCGCCTCCTCCCCGATCTCCGAGAAGCTCTTCCGCGACTCCG--- 672 consensus_10988#0 TCGCCGCCATCAGCCGCCGCACCACCCCCGCCGCCCTCTCCCCGCCGCCGCCCTCCATAT 839 consensus_10988#2 ------------------------------------------------------------ consensus_10988#1 ------------------------------------------------------------ consensus_10988#0 CCCTCTCCTCTCCTCTCCTCCCGCCGCCANGGCGTCGCAGTCGATGTGAGTGGGTCGAGG 899 consensus_10988#2 ------------------------------------------------------------ consensus_10988#1 ------------------------------------------------------------ consensus_10988#0 TCGTCGTCGGCGGCGGCGCGATGCACGGTGGCCTCAAAATCACAGCTTTTGTATGCTCAT 959 consensus_10988#2 ------------------------------------------------------------ consensus_10988#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||