These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 918 fasta sequence [GCCAAATCCCATCTCCATTTTCCTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG-CCCAGTG-ATGGAGTTC-TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAGTTTCTGAATACAATAGTTGGACACTATTCTTTATTTTCCTGTTGAAAAA] [+] EMBL AK073235 [GCCAAATCCCATCTCCATTTTCCTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAATTAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAGTTTCTGAATACAATAGTTGGACACTATTCTTTAT ] [+] EMBL CF324795 [ CTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGG ] [+] EMBL CF325961 [ TTTGTTATTACTAGTTTAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTT ACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATC ] [-] EMBL CA305705 [ AACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGA ] [+] EMBL CA753129 [ GTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCAACAAAATGTGAATCTGAGAAGG CCCAGTG ATGGAGTTC TGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAaaaaaa ] [+] EMBL AU058091 [ ACCACCAACAAAATGTGAATCTGAGAAGGCCCCAGTGAATGGAGTTCNTGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTGAAGTTTCTGAATACAATAGTTGGACACTANTCTTTATTTTCCTGTTGAAAAA] consensusID : consensus_10994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence [TTCTAGGCCTTAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTAATCAAACCAAAAAAAGGGGAAAAAAAACCATTCTTTCTTGGTCGCTCCATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAGAGGACTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATATGGCAAATCACAACATTGTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGATATGGAAGCTAGCGATTCTAGGAATGCTTTCTTCTTACGGCTGAAAAAAAAGAAATCTTCTAGCTAACTTTCCTATGAAAGGGGACGAAAATCATGTGCTTTGGAAATGTTTCTGGCATATGCCTAATTTTCAGATAAATCACAACCATATGTTTCTTTTTAGTGCACACAACATGTTCTCTCTT] [+] EMBL CB634861 [TTCTAGGCCTTAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGCGTGCTAGGGAGTCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTTCCCCAAATCCACTCCTTCCTTTCGATTTGCCTCCTTCCTTCCTTGGTTCATTCATTGATTTTTGCACCGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTAATCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCCATTCCAAGGTAATCAAACCAAAAAAAGGGGAAAAAAAACCATTCTTTCTTGGTCGCTCCATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAGAGGACTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATATGGCAAATCACAACATTGTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGATATGGAAGCTAGCGATTCTAGGAATGCTTTCTTCTTACGGCTGAAAAAAAAGAAATCTTCTAGCTAACTTTCCTATGAAAGGGGACGAAAATCATGTGCTTTGGAAATGTTTCTGGCATATGCCTAATTTTCAGATAAATCACAACCATATGTTTCTTTTTAGTGCACACAACATGTTCTCTCTT] consensusID : consensus_10994#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [TTATAGCGGAAGAAGATTTTTTCTTCAGGGTGGAGCGCATCAGAACGCCGTACGTACCACCTACGAATAATAGGTAGCCCCACCCCAGACAGAGTTTGTGAGCCGTGTAATTGGCGACCATTTTGCGCGGTTTGGGTCAGATAGCAAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTACGGGCCATATTTGGTTTTGAGCCCCAGTTTTTGTTCCAGTGTTGAATCTTTTGATGTATGTAGTAAAAATGGGTGCTGGCATCATATTTTCATGCTTCCTAACCAAGGTACAGCATAATATTGGATTTTATTTTGTTGCTTGCCACATAACTTTTTTTTTATTGAAGTATAATTTTGCATGAAACTGTAGGTTGGGTCGGCTTTGAAAACAGGATTTTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTTTTGTTTCACCCCCAACAAAATGTGAATTTGAGAAGGCCCAGTGATGGAGTTTTGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTTTGTTTTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATTTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTTGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGGCTGAAAAAAAAAAAG] [-] EMBL CB634862 [TTATAGCGGAAGAAGATTTTTTCTTCAGGGTGGAGCGCATCAGAACGCCGTACGTACCACCTACGAATAATAGGTAGCCCCACCCCAGACAGAGTTTGTGAGCCGTGTAATTGGCGACCATTTTGCGCGGTTTGGGTCAGATAGCAAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTACGGGCCATATTTGGTTTTGAGCCCCAGTTTTTGTTCCAGTGTTGAATCTTTTGATGTATGTAGTAAAAATGGGTGCTGGCATCATATTTTCATGCTTCCTAACCAAGGTACAGCATAATATTGGATTTTATTTTGTTGCTTGCCACATAACTTTTTTTTTATTGAAGTATAATTTTGCATGAAACTGTAGGTTGGGTCGGCTTTGAAAACAGGATTTTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTTTTGTTTCACCCCCAACAAAATGTGAATTTGAGAAGGCCCAGTGATGGAGTTTTGATATTTATATCATTGTTGATTTGGGAATAGACGTAACCCCTATTGTGGTTAGATTTTGTTTTTGAAGTGTAATATGATGGCAACTGTAACATGAGGATTACATTTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTTGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGGCTGAAAAAAAAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10994#0 GCCAAATCCCATCTCCATTTTCCTCTCTTTCTCGTTGCGATTTGAGAATTCACCTTCTTC 60 consensus_10994#1 ------------------------------------------------------------ consensus_10994#2 ------------------------------------------------------------ consensus_10994#0 TTCCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCGTCATCTCGTGC 120 consensus_10994#1 ------------------------------------------------------------ consensus_10994#2 ------------------------------------------------------------ consensus_10994#0 TTGTATCCTTGTTCTTCATCTTCTCTCACCTTCCCTTGAGAAGATTTGTTATTACTAGTT 180 consensus_10994#1 ------------------------------------------------------------ consensus_10994#2 --------------------------------------------------TTATAGCGGA 10 consensus_10994#0 TAATATTTCTAGGAAAGAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGT-- 238 consensus_10994#1 ------TTCTAGGCCTTAGGAGAAGAGGAGAGGAGAGGAGAGGGTGGTAACGCAGCGT-- 52 consensus_10994#2 AGAAGATTTTTTCTTCAGGGTGGAGCGCATCAGAACGCCGTACGTACCACCTACGAATAA 70 ** * ** * ** * * ** * * ** * * * * consensus_10994#0 TAGGTGGGGGCGTGCTAGGGAG---TCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCA 295 consensus_10994#1 TAGGTGGGGGCGTGCTAGGGAG---TCAAGAACAGAAGGAAGGGAGGCCCAACTGCTCCA 109 consensus_10994#2 TAGGTAGCCCCACCCCAGACAGAGTTTGTGAGCCGTGTAATTGGCGACCATTTTGCGCGG 130 ***** * * * ** ** * ** * * * ** * ** *** * consensus_10994#0 TCCTCCCTTTCCCCAAATCCACTCCTTCCTT-TCGATTTGCCTCCTTCCTTCCTTGGTTC 354 consensus_10994#1 TCCTCCCTTTCCCCAAATCCACTCCTTCCTT-TCGATTTGCCTCCTTCCTTCCTTGGTTC 168 consensus_10994#2 TTTGGGTCAGATAGCAAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTAC--GGGCC 188 * ** * * ** * * * *** ** * ** * ** * consensus_10994#0 ATTCATTGATTTTTGCACC-GCATTTGAGGAAGAAT-GTGCCCGCTGAGGGTGATCCTAA 412 consensus_10994#1 ATTCATTGATTTTTGCACC-GCATTTGAGGAAGAAT-GTGCCCGCTGAGGGTGATCCTAA 226 consensus_10994#2 ATATTTGGTTTTGAGCCCCAGTTTTTGTTCCAGTGTTGAATCTTTTGATGTATGTAGTAA 248 ** * * *** ** ** * **** ** * * * *** * * *** consensus_10994#0 TCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCG 472 consensus_10994#1 TCTTCCTCTCCGCCACCATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCG 286 consensus_10994#2 AAATGGGTGCTGGCATCATATTTTCATGCTTCCTAACCAAGG--TACAGCAT-AATATTG 305 * * * ** *** ** ****** * * ** ** * ** * consensus_10994#0 ACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCC 532 consensus_10994#1 ACCTCCACGACGATGCCGACGCCTCCGAATCCCCAAGGGAAAGGCCCCCCGTGCCCCTCC 346 consensus_10994#2 GATTTTATTTTGTTGCTTGCCACATAACTTTTTTTTTATTGAAGTATAATTTTGCATGAA 365 * * * *** * * * * * * * consensus_10994#0 ATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGAT--------GGTGG---- 580 consensus_10994#1 ATTCCAAGGT-AATCAAACCAAAAAAAGGGGAAAAAAAACCATTCTTTCTTGGTCGCTCC 405 consensus_10994#2 ACTGTAGGTTGGGTC-GGCTTTGAAAACAGGATTTTGGACGAT--------GGTGG---- 412 * * * * * * **** *** ** ** *** * consensus_10994#0 ACATGGCAAGTGGGAAA---TACCTTTGGCGCAC-TCTTGTTTCACCACCAACAAAATGT 636 consensus_10994#1 ATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAGAGGA 465 consensus_10994#2 ACATGGCAAGTGGGAAA---TACCTTTGGCGCAC-TTTTGTTTCACCCCCAACAAAATGT 468 * * **** * ***** * *** * * * ** * * * * * * consensus_10994#0 GAATCTGAGAAGGCCCAGTGATGGAGTTCTGATATT-------TATATCATTGTTGATTT 689 consensus_10994#1 CTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATAT 525 consensus_10994#2 GAATTTGAGAAGGCCCAGTGATGGAGTTTTGATATT-------TATATCATTGTTGATTT 521 * * * * ** * * * ** ** * ** * * ** * consensus_10994#0 GGGAATAGACGTAACCCCTATTGTGGTTAGATTCTGTTCTTGAAGTGTAATATGATGGCA 749 consensus_10994#1 GGCAAATCACA-ACATTGTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGAT-ATGGAA 583 consensus_10994#2 GGGAATAGACGTAACCCCTATTGTGGTTAGATTTTGTTTTTGAAGTGTAATATGATGGCA 581 ** ** ** * * **** ** ** * * * ** ** **** * consensus_10994#0 ACT-GTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCC- 807 consensus_10994#1 GCTAGCGATTCTAGGAATGCTTTCTTCT-TACGGCTGAAAAAAAAGAAATCTTCTAGCTA 642 consensus_10994#2 ACT-GTAACATGAGGATTACATTTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCC- 639 ** * * **** * * * * ** * **** * * ** *** consensus_10994#0 -TTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGACTG 866 consensus_10994#1 ACTTTCCTATGAAAGGGGACGA-AAATCATGTGCTTTGGAAATGTTTCTGGCATATGCCT 701 consensus_10994#2 -TTTTTGTGTAACCTAAAACAATGAGTGGAGAATTGTATTAATACATGAGATTTGGGCTG 698 *** * * * ** * * * * * * *** * * * * consensus_10994#0 AAGTTTCTGA-ATACAATAGTTGGACACTATTCTTTATTTTCCTGTTGAAAAA------- 918 consensus_10994#1 AATTTTCAGATAAATCACAACCATATGTTTCTTTTTAGTGCACACAACATGTTCTCTCTT 761 consensus_10994#2 AAAAAAAAAAAG------------------------------------------------ 710 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||