cluster # 11

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Oryza sativa
cluster # 11 cluster # 11 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11#0 length = 749 sequences # 1

consensus_11#1 length = 257 sequences # 1

consensusID : consensus_11#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGGAAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCAAAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGGCGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGAAGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGGACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGCTCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCTGAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTACGACAAGATCGATTCAAATTTTCTAAAAGA]

[+] EMBL AK072742             [GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGGAAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCAAAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGGCGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGAAGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGGACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGCTCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCTGAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTACGACAAGATCGATTCAAATTTTCTAAAAGA]




>consensus_11#0
GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGG
AAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCA
AAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGG
CGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGA
AGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGG
ACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGC
TCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCT
GAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTA
CAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAG
CTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGA
AGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCG
CAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTAC
GACAAGATCGATTCAAATTTTCTAAAAGA

consensusID : consensus_11#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [AGAGGACGAGACAAGGGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTAAAAAAAAAGAAAAA]

[-] EMBL CA761512             [AGAGGACGAGACAAGGGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTAAAAAAAAAGAAAAA]




>consensus_11#1
AGAGGACGAGACAAGGGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCT
AGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGA
TGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGAT
ATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGA
TTAAAAAAAAAGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11#0      GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGG 60
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      AAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCA 120
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      AAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGG 180
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      CGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGA 240
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      AGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGG 300
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      ACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGC 360
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      TCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCT 420
consensus_11#1      ------------------------------------------------------------
                                                                                

consensus_11#0      GAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTA 480
consensus_11#1      ----------------------------------AGAGGACGAGACAAGGGGAGAAATTA 26
                                                           *   ****** **********

consensus_11#0      CAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAG 540
consensus_11#1      CAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAG 86
                    ************************************************************

consensus_11#0      CTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGA 600
consensus_11#1      CTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGA 146
                    ************************************************************

consensus_11#0      AGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCG 660
consensus_11#1      AGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCG 206
                    ************************************************************

consensus_11#0      CAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTAC 720
consensus_11#1      CAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTAAAAAAAAAGAAAAA--------- 257
                    *************************************   *      *  *         

consensus_11#0      GACAAGATCGATTCAAATTTTCTAAAAGA 749
consensus_11#1      -----------------------------