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Oryza sativa
cluster # 11008 cluster # 11008       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11008#0 length = 1185 sequences # 3  
consensus_11008#1 length = 1025 sequences # 2  
consensus_11008#2 length = 1003 sequences # 2  
consensus_11008#3 length = 661 sequences # 1  

consensusID : consensus_11008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1185
fasta sequence
                              [TCTTTTTAATTTTTTTTTTTTTTTTCAAATTGAAGCATAGGCCTTTCCTCACATGCATGAATTGAATAATTTCCTGCAGGAACAAGAAAATATTCTCATCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACAAGGAACTACAATGGAAAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGTTCAATATGTGACCATCCTGGGACAAAATCGCTCATTATCGGTGAATACCGCATCAAAGAGAACCTGAATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATATATACTACAAAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGAGCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGATAATCTTGGAAGGTATTTGTATACCCAAAATTTTATAAATACATCCAAGGCAACAGGAACCAGACAAACAAAGAAGGTGATTGCAGCTTGATCGGCTTCAAGGCCGTAGTGCTCGAGAATGACTTCTACCAAAGAATGCCAACCTGACTCTGAATGGTACCCTAGAAGGATGTCTGAAACTAGAATTATAAGGAATGCTTTCCCACTGTCTGAAATATTATTTAGTAACTTATATCCTGTGAATTTCAGCATCGCAACCTGAAAGTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCGCTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGC]

[+] EMBL CB625924             [TCTTTTTAATTTTTTTTTTTTTTTTCAAATTGAAGCATAGGCCTTTCCTCACATGCATGAATTGAATAATTTCCTGCAGGAACAAGAAAATATTCTCATCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACAAGGAACTACAATGGAAAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGTTCAATATGTGACCATCCTGGGACAAAATCGCTCATTATCGGTGAATACCGCATCAAAGAGAACCTGAATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATATATACTACAAAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAAACACTACCCCCGAGTGAGCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGATAATCTTGGAAGGTATTTGTATACCCAAAATTTTATAAATACATCCAAGGCAACTGGAACCAGACAAACAAAGAAGGTGATTGCAGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB679707             [                           ttTTGAAGCATAGGTATTTCCTCACATGCATGCATTGAATAATTTCCTGCAGGAACAAGAAAATAGTCTCATCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACAAGGAACTACAATGGAGAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGTTCGATATGTGAGCATCCTGGGACAAAATCGCTCATTATCGGTGAATACCGCATC      AACCTGAATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATATATACTACAGAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGAGCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGATAATCTTGGAAGGTATTTGTATACCCAAAATTTTATAAATACATCCAAGGCAACAGGAACCAGACAAACAAAGAAGGTGATTGCAGCTTGATCGGCTTCAAGGCCGTAGTGCTCGAGAATGACTTCTACCAAAGAATGCCAACCTGACTCTGAATGGTACCCTAGAAGGATGTCTGAAACTAGAATTA                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB679706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGAGCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGATAATCTTGGAAGGTATTTGTATACCCAAAATTTTATAAATACATCCAAGGCAACAGGAACCAGACAAACAAAGAAGGTGATTGCAGCTTGATCGGCTTCAAGGCCGTAGTGCTCGAGAATGACTTCTACCAAAGAATGCCAACCTGACTCTGAATGGTACCCTAGAAGGATGTCTGAAACTAGAATTATAAGGAATGCTTTCCCACTGTCTGAAATATTATTTAGTAACTTATATCCTGTGAATTTCAGCATCGCAACCTGAAAGTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCGCTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGC]


>consensus_11008#0 TCTTTTTAATTTTTTTTTTTTTTTTCAAATTGAAGCATAGGCCTTTCCTCACATGCATGA ATTGAATAATTTCCTGCAGGAACAAGAAAATATTCTCATCCCGCACACCAAATTGGACCT AAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACAAGGAACT ACAATGGAAAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTTGTATACA TATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGTTCAATAT GTGACCATCCTGGGACAAAATCGCTCATTATCGGTGAATACCGCATCAAAGAGAACCTGA ATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATATATACTA CAAAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCGAAATTGC AATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGAGCCCTGG AAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATG GAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGATAATCTT GGAAGGTATTTGTATACCCAAAATTTTATAAATACATCCAAGGCAACAGGAACCAGACAA ACAAAGAAGGTGATTGCAGCTTGATCGGCTTCAAGGCCGTAGTGCTCGAGAATGACTTCT ACCAAAGAATGCCAACCTGACTCTGAATGGTACCCTAGAAGGATGTCTGAAACTAGAATT ATAAGGAATGCTTTCCCACTGTCTGAAATATTATTTAGTAACTTATATCCTGTGAATTTC AGCATCGCAACCTGAAAGTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCC ATAAACCATGTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATC TCTCAACTCTATCGCTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGG AGATTTACCAATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTAC CATCAGGAGTTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGC



consensusID : consensus_11008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1025
fasta sequence
                              [TTAGTAACTTATATCCTGTAATTTCAGCATCGCAACCTGAAAGCTTAGCAGGCAATAAGAATAAGTTGTACGCAGGATAACACTAAGCATTCAATGGGAGAGAAAAATAGGCTACGATGATGGATAAGATAGATTGATGAATTCATTGTACATAAATCATGGACTCCAGGTATGTGTTACTAAATGATACTAACAATCAAACATATTGCAGAAACTGAGGTGGTCTTACTACTGCACTAGGTCAGAAAAGTATGATGTATAACCAGGTACAAATAGAATGGGGGAATACTCTGGTCAGTTCATCACTGCAGTTCTTTTGGCACAAAATCATCATGTACTATGTATTAACAGCAGAAATCGGATAACTCTGAGAGAGGCCTAATAGTGCAGAAATTTGTCAACTTGTGGGGTGTTTATTTATAACCAATCACTTAGCTCACATGCACACTCAGAAAGCTGAAAAATTTATTGGAACACAATCAAAGATGGAAAAAAAAAAACAAAGCTGCTTATCTGATAAAACATACTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCGCTTTTTCCCGCAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGCATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCACAATCAATAATGCTAGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTCAAACAGCATGTCATTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTTATCCCTCACTATCTCTGTTGGATCATC]

[-] EMBL CF310763             [TTAGTAACTTATATCCTGTAATTTCAGCATCGCAACCTGAAAGCTTAGCAGGCAATAAGAATAAGTTGTACGCAGGATAACACTAAGCATTCAATGGGAGAGAAAAATAGGCTACGATGATGGATAAGATAGATTGATGAATTCATTGTACATAAATCATGGACTCCAGGTATGTGTTACTAAATGATACTAACAATCAAACATATTGCAGAAACTGAGGTGGTCTTACTACTGCACTAGGTCAGAAAAGTATGATGTATAACCAGGTACAAATAGAATGGGGGAATACTCTGGTCAGTTCATCACTGCAGTTCTTTTGGCACAAAATCATCATGTACTATGTATTAACAGCAGAAATCGGATAACTCTGAGAGAGGCCTAATAGTGCAGAAATTTGTCAACTTGTGGGGTGTTTATTTATAACCAATCACTTAGCTCACATGCACACTCAGAAAGCTGAAAAATTTATTGGAACACAATCAAAGATGGAAAAAAAAAAACAAAGCTGCTTATCTGATAAAACATACTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTAT                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB625923             [                                                                                                                                                                                                               GCAGAAACTGAGGTGGTCTTACTACTGCACTAGGTCAGAAAAGTATGATGTATAACCAGGTACAAATAGAATGGGGGAATACTCTGGTCAGTTCATCACTGCAGTTCTTTTGGCACAAAATCATCATGTACTATGTATTAACAGCAGAAATCGGATAACTCTGAGAGAGGCCTAATAGTGCAGAAATTTGTCAACTTGTGGGGTGTTTATTTATAACCAATCACTTAGCTCACATGCACACTCAGAAAGCTGAAAAATTTATTGGAACACAATCAAAGATGG AAAAAAAAAACAAAGCTGCTTATCTGATAAAACATACTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCGCTTTTTCCCGCAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGCATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCACAATCAATAATGCTAGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTCAAACAGCATGTCATTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTTATCCCTCACTATCTCTGTTGGATCATC]


>consensus_11008#1 TTAGTAACTTATATCCTGTAATTTCAGCATCGCAACCTGAAAGCTTAGCAGGCAATAAGA ATAAGTTGTACGCAGGATAACACTAAGCATTCAATGGGAGAGAAAAATAGGCTACGATGA TGGATAAGATAGATTGATGAATTCATTGTACATAAATCATGGACTCCAGGTATGTGTTAC TAAATGATACTAACAATCAAACATATTGCAGAAACTGAGGTGGTCTTACTACTGCACTAG GTCAGAAAAGTATGATGTATAACCAGGTACAAATAGAATGGGGGAATACTCTGGTCAGTT CATCACTGCAGTTCTTTTGGCACAAAATCATCATGTACTATGTATTAACAGCAGAAATCG GATAACTCTGAGAGAGGCCTAATAGTGCAGAAATTTGTCAACTTGTGGGGTGTTTATTTA TAACCAATCACTTAGCTCACATGCACACTCAGAAAGCTGAAAAATTTATTGGAACACAAT CAAAGATGGAAAAAAAAAAACAAAGCTGCTTATCTGATAAAACATACTTTACTCTGGTTG AAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTCAGACCAGATATTTGCAAAC GCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCGCTTTTTCCCGCAACTCT GACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAATCTCTACTTCAAAACGATAT CTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTTCTGGCTGCGCCTTACATCA AGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGCATCAGAACA TAGTCATGAACCAGAAAATCCAACACCCATGGAATCACAATCAATAATGCTAGAAATTTG GCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTCAAACAGCATGTCATTGTAATCT TCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTTATCCCTCACTATCTCTGTTGGA TCATC



consensusID : consensus_11008#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1003
fasta sequence
                              [GCTACCCACTTACGCTCCATTAGTTCCCTCTACACACCCAGTTTCTATGACGTGATCTTAAACATAATATCAAGGGGCCGCCACAACGTTTGGACCCCCAGGGTTAAACCAAGGGGGGCTTTCCAAGGGCGCTTGAAAGCGAGGGGGCTTTGTTTACCCCTGGAAAGGATTTTCCAAGCTATAGTGGACCACGTTTTTCATTCCGGTTAAAAGGGCACAGAGGGGGGTAATCGCTCAAATAGGCAATTGGTACTGTCCCTCAAAATTTTTTTTTTCCATCTTATTGGACCATCAAAGATGGAAAAACCAAAATGGGTNGTTTATNGATANACATCTTTATTCTGGGTGAAGTCATAGAAAGGAATAGGGAAATTCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTCGGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCCTGATCAAGTAGCAGAGCAGATCTGTTAAGATTGAACATATGAAATTGCAGGATAGAAGGTCCATTGCTCATGTCAGACAATGCTAGTGCATCAACAGAAGTTACAACAAGGCAAGAAAGTATNATAGTTAGAGTGTTTCTCACGGTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGNAGGAGA-TTACCAATCTTTACTTCAAAACGATATCTTGCTTTCTCAGTATNTATGTCCTNTACCATCAGGAGTTTCTGGCTGCGCCTANCATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGCATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCACAATCAATAATGCTAGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTCAAACAGCATGTCATTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTTATCCCTCACTATCTCTGTAGGATCATCCGTTATCAGGTCTGACACATCCAAATCCC]

[-] EMBL AW155058             [GCTACCCACTTACGCTCCATTAGTTCCCTCTACACACCCAGTTTCTATGACGTGATCTTAAACATAATATCAAGGGGCCGCCACAACGTTTGGACCCCCAGGGTTAAACCAAGGGGGGCTTTCCAAGGGCGCTTGAAAGCGAGGGGGCTTTGTTTACCCCTGGAAAGGATTTTCCAAGCTATAGTGGACCACGTTTTTCATTCCGGTTAAAAGGGCACAGAGGGGGGTAATCGCTCAAATAGGCAATTGGTACTGTCCCTCAAAATTTTTTTTTTCCATCTTATTGGACCATCAAAGATGGAAAAACCAAAATGGGTNGTTTATNGATANACATCTTTATTCTGGGTGAAGTCATAGAAAGGAATAGGGAAATTCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTCGGGTTTTCTAATCTCCATTCATCTCTCAACTCTATCCTGATCAAGTAGCAGAGCAGATCTGTTAAGATTGAACATATGAAATTGCAGGATAGAAGGTCCATTGCTCATGTCAGACAATGCTAGTGCATCAACAGAAGTTACAACAAGGCAAGAAAGTATNATAGTTAGAGTGTTTCTCACGGTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGNAGGAGA TTACCAATCTTTACTTCAAAACGATATCTTGCTTTCTCAGTATNTATGTCCTNTACCATCAGGAGTTTCTGGCTGCGCCTANCATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGCATCAGA                                                                                                                                                                                                                         ]
[-] EMBL CF305619             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGAAGTTACAACAAGGCAAGAAAGTATAATAGTTAGAGTGTTTCTCACGCTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGCATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCACAATCAATAATGCTAGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTCAAACAGCATGTCATTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTTATCCCTCACTATCTCTGTAGGATCATCCGTTATCAGGTCTGACACATCCAAATCCC]


>consensus_11008#2 GCTACCCACTTACGCTCCATTAGTTCCCTCTACACACCCAGTTTCTATGACGTGATCTTA AACATAATATCAAGGGGCCGCCACAACGTTTGGACCCCCAGGGTTAAACCAAGGGGGGCT TTCCAAGGGCGCTTGAAAGCGAGGGGGCTTTGTTTACCCCTGGAAAGGATTTTCCAAGCT ATAGTGGACCACGTTTTTCATTCCGGTTAAAAGGGCACAGAGGGGGGTAATCGCTCAAAT AGGCAATTGGTACTGTCCCTCAAAATTTTTTTTTTCCATCTTATTGGACCATCAAAGATG GAAAAACCAAAATGGGTNGTTTATNGATANACATCTTTATTCTGGGTGAAGTCATAGAAA GGAATAGGGAAATTCATAAACCATGTCAGACCAGATATTTGCAAACGCTTTCGGGTTTTC TAATCTCCATTCATCTCTCAACTCTATCCTGATCAAGTAGCAGAGCAGATCTGTTAAGAT TGAACATATGAAATTGCAGGATAGAAGGTCCATTGCTCATGTCAGACAATGCTAGTGCAT CAACAGAAGTTACAACAAGGCAAGAAAGTATNATAGTTAGAGTGTTTCTCACGGTTTTTC CCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGNAGGAGATTACCAATCTTTACTTCA AAACGATATCTTGCTTTCTCAGTATNTATGTCCTNTACCATCAGGAGTTTCTGGCTGCGC CTANCATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCTTTCCAAAAATGGC ATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCACAATCAATAATGCT AGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTCAAACAGCATGTCA TTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTTATCCCTCACTATC TCTGTAGGATCATCCGTTATCAGGTCTGACACATCCAAATCCC



consensusID : consensus_11008#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence
                              [TTTTTTTTTTTTTGNAAAAAAGGGAGCAATTTCTGATTGAAGCATAGGTATTTCCTCACATGCATGAATTGAATAATTTCCTGCAGGAACAAAAAAATAGTCTCATCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACAAGGAACTACAATGGAGAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGTTCGATATGTGAGCATCCTGGGACAAAATCGCTCATTATCGGTGAATACAGCATCAGAGAGAACCTGAATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATATATACTACAGAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGAGCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGAT]

[+] EMBL CA760624             [TTTTTTTTTTTTTGNAAAAAAGGGAGCAATTTCTGATTGAAGCATAGGTATTTCCTCACATGCATGAATTGAATAATTTCCTGCAGGAACAAAAAAATAGTCTCATCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACAAGGAACTACAATGGAGAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGTTCGATATGTGAGCATCCTGGGACAAAATCGCTCATTATCGGTGAATACAGCATCAGAGAGAACCTGAATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATATATACTACAGAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGAGCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGAT]


>consensus_11008#3 TTTTTTTTTTTTTGNAAAAAAGGGAGCAATTTCTGATTGAAGCATAGGTATTTCCTCACA TGCATGAATTGAATAATTTCCTGCAGGAACAAAAAAATAGTCTCATCCCGCACACCAAAT TGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAACATTACAAATGCCACA AGGAACTACAATGGAGAAAAAAGGGGGAAAGGCAAATTCCTACTGCAGCCTCTGCTGTTT GTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGATGAAAACACAGAAGGT TCGATATGTGAGCATCCTGGGACAAAATCGCTCATTATCGGTGAATACAGCATCAGAGAG AACCTGAATATTCCTGGATGATATGTGTAATCAGCACATTTTTTTTATGTGGAGAGTATA TATACTACAGAATGTTATGTATGCCTTTTGTAGGGTAAGCACTGGTTAGGGCGACCTCCG AAATTGCAATCCATGGCAACTATGTTGGCATTTCATCAATCAGACACTAGCCCCGAGTGA GCCCTGGAAGGATGGTCTTTCCTTCAAATTCTTAATGGAATGAATTAAGCAGATCAAATT CCTGATGGAAAGTCTCTAATGACGCTTTATTTCATCCAAAATGTTACCCACACTAGGTGA T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11008#0      ---------------------TCTTTTTAATTTTTTTTTTTTTTTTCAAATTGAAGCATA 39
consensus_11008#3      --------------TTTTTTTTTTTTTGNAAAAAAGGGAGCAATTTCTGATTGAAGCATA 46
consensus_11008#1      -TTAGTAACTTATATCCTGT-AATTTCAGCATCGCAACCTGAAAGCTTAGCA-GGCAATA 57
consensus_11008#2      GCTACCCACTTACGCTCCATTAGTTCCCTCTACACACCCAGTTTCTATGACGTGATCTTA 60
                                              **                                 **

consensus_11008#0      GGCCTTTCCTC-ACATGCATGAATTGAATAATTTCCTGCAGGAACAAGAAAATATTCTCA 98
consensus_11008#3      GGTATTTCCTC-ACATGCATGAATTGAATAATTTCCTGCAGGAACAAAAAAATAGTCTCA 105
consensus_11008#1      AGAATAAGTTGTACG---CAGGATAACACTAAG-CATTCAATGGGAGAGAAAAATAGGCT 113
consensus_11008#2      AACATAATATCAAGGGGCCGCCACAACGTTTGGACCCCCAGGGTTAAACCAAGGGGGGCT 120
                           *    *  *         *           *   **     *    **      * 

consensus_11008#0      TCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAAC 158
consensus_11008#3      TCCCGCACACCAAATTGGACCTAAATTATTTTCTTAGACTGGCCTAAATTCCTTGATAAC 165
consensus_11008#1      ACGATGATGGATAAGATAGATTGATGAATTCATTGTACATAAATCATGGACTCCAGGTAT 173
consensus_11008#2      TTCCAAGGGCGCTTGAAAGCGAGGGGGCTTTGTTTACCCCTGGAAAGGATTTTCCAAGCT 180
                                                   **   *           *              

consensus_11008#0      ATTACAAATGCCACAAGGAACTACAATGGAAAAAAAAGGGGGAAAGGCAAATTCCTACTG 218
consensus_11008#3      ATTACAAATGCCACAAGGAACTACAATGGAGAAAAAAGGGGGAAAGGCAAATTCCTACTG 225
consensus_11008#1      GTGTTACTAAATGATACTAACAATCAAACATATTGCAGAAACTGAGGTGG--TCTTACTA 231
consensus_11008#2      ATAGTGGACCACGTTTTTCATTCCGGTTAAAAGGGCACAGAGGGGGGTAA--TCGCTCAA 238
                        *                 *         * *    *        **     **   *  

consensus_11008#0      CAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGAT 278
consensus_11008#3      CAGCCTCTGCTGTTTGTATACATATACATAGTTGTTTCGAATTTCACATAACAAAAAGAT 285
consensus_11008#1      C----T--GCACTAGGT-CAGAAAAGTATGATG-TATAACCAGGTACAAATAGAATGGGG 283
consensus_11008#2      A----TAGGCAATTGGTACTGTCCCTCAAAATT-TTTTTTTTCCATCTTATTGGACCATC 293
                            *  **  *  **          *   *  * *         *  *    *     

consensus_11008#0      GAAAACA-CAGAAGGTTCAATATGTGACCATCCTGGGACAAAATCGCTCATTATCGGTGA 337
consensus_11008#3      GAAAACA-CAGAAGGTTCGATATGTGAGCATCCTGGGACAAAATCGCTCATTATCGGTGA 344
consensus_11008#1      GAATACTCTGGTCAGTTCATCACTGCAGTTCTTTTGGCACAAAATCATCATGTACTATGT 343
consensus_11008#2      AAAGA---TGGAAAAACCAAAATGGGTNGTTTATNGATANACA-TCTTTATTCTGGGTGA 349
                        ** *     *      *   *           * *    * *    * **      ** 

consensus_11008#0      ATACCGCATCAAAGAGAACCTGAATATTCCTGGATGATATGTG-TAATCAGCACATTTTT 396
consensus_11008#3      ATACAGCATCAGAGAGAACCTGAATATTCCTGGATGATATGTG-TAATCAGCACATTTTT 403
consensus_11008#1      ATTAA----CAGCA-GAAATCGGATAACTCTGAGAGAGGCCTAATAGTGCAGAAATTTGT 398
consensus_11008#2      AGTCA----TAGAAAGGAATAGGGAAATTC---ATAAACCATGTCAGACCAGATATTTGC 402
                       *         *    * *   *   *   *      *    *   *      * ****  

consensus_11008#0      TT-TATGTGGAGAGTATATATACTACAAAATGTT------ATGTATGCCTTTTGTAGGGT 449
consensus_11008#3      TT-TATGTGGAGAGTATATATACTACAGAATGTT------ATGTATGCCTTTTGTAGGGT 456
consensus_11008#1      CAACTTGTGGGGTGTTTATTTATAACCAATCACTTAGCTCACATGCACACTCAGAAAGCT 458
consensus_11008#2      AAACGCTTTCGG-GTTTTCTAATCTCCATTCATCT--CTCAACTCTATCCTGATCAAGTA 459
                              *   * ** *    *   *              *  *      *    * *  

consensus_11008#0      AAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCAT 509
consensus_11008#3      AAGCACTGGTTAGGGCGACCTCCGAAATTGCAATCCATGGCAACTATGTTGGCATTTCAT 516
consensus_11008#1      GAAAAATTTATTGGAACACAATCAAAGATGGAAAAAAAAAAACAAAGCTGCTTATCTGAT 518
consensus_11008#2      GCAGAGCAGATCTG--------TTAAGATTGAACATATGAAA---------TTGCAGGAT 502
                           *     *  *          **  *  **   *    *                **

consensus_11008#0      CAATCAGACACTAGCCCCG--AGTGAGCCCTGGAAGGATGGTCTTTCCTTCA-AATTCTT 566
consensus_11008#3      CAATCAGACACTAGCCCCG--AGTGAGCCCTGGAAGGATGGTCTTTCCTTCA-AATTCTT 573
consensus_11008#1      AAAACATACTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCAT 578
consensus_11008#2      AGAAGGTCCATTGCTCATGTCAGACAATGCTAGTGCATCAACAGAAGTTACA---ACAAG 559
                         *     *  *   *  *             *               * **        

consensus_11008#0      AATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTA---- 622
consensus_11008#3      AATGGAATGAATTAAGCAGATCAAATTCCTGATGGAAAGTCTCTAATGACGCTTTA---- 629
consensus_11008#1      GTCAGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTC 638
consensus_11008#2      GCAAGAAAGTATNATAGTTAGAGTGTTTC------------------------TCA---- 591
                           **    **       *     ** *                        * *    

consensus_11008#0      ------TTTCATCCAAAATGTTACCCACACTAGGTGAT--AATCTTGGAAGGTATTTGTA 674
consensus_11008#3      ------TTTCATCCAAAATGTTACCCACACTAGGTGAT---------------------- 661
consensus_11008#1      TATCGCTTTTTCCCGCAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACC 698
consensus_11008#2      ---CGGTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGNAGGAGATT-ACC 647
                             ***   **  **   *  *** *     * **                      

consensus_11008#0      TACCCAAAATTTTATAAATACATCCAAGGCAACAGGAACCAGACAAACAAAGA--AGGTG 732
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      AATCTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAG 758
consensus_11008#2      AATCTTTACTTCAAAACGATATCTTGCTTTCTCAGTATNTATGTCCTNTACCATCAGGAG 707
                                                                                   

consensus_11008#0      ATTGCAGCTTGATCGGCTTCAAGGCCGTAGTGCTCGAGAATGACTTCTACCAAAGAATGC 792
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      TTTCTGGCTGCGCCTTACATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCT 818
consensus_11008#2      TTTCTGGCTGCGCCTANCATCAAGCAGCTCAGCAGCAAGTGGTACCTTCTGGACGTACCT 767
                                                                                   

consensus_11008#0      CAACCTGACTCTGAATGGTACCCTAGAAGGATGTCTGAAACTAGAATTATAAGGAATGCT 852
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      TTCCAAAAATGGCATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCAC 878
consensus_11008#2      TTCCAAAAATGGCATCAGAACATAGTCATGAACCAGAAAATCCAACACCCATGGAATCAC 827
                                                                                   

consensus_11008#0      TTCCCACTGTCTGAAATATTATTTAGTAACTTATATCCTGTGAATTTCAGCATCGCAACC 912
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      AATCAATAATGCTAGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTC 938
consensus_11008#2      AATCAATAATGCTAGAAATTTGGCCGAATTCGTTGAAGCATACAGAAAAACCCGGTCTTC 887
                                                                                   

consensus_11008#0      TGAAAGTTTACTCTGGTTGAAGTACATAAGAAGGAATAGGGAAATTCCATAAACCATGTC 972
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      AAACAGCATGTCATTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTT 998
consensus_11008#2      AAACAGCATGTCATTGTAATCTTCATCTACAGAGTCTCTGAAAGTTTCAATCAAACCTTT 947
                                                                                   

consensus_11008#0      AGACCAGATATTTGCAAACGCTTTTCGGTTTTCTAATCTCCATTCATCTCTCAACTCTAT 1032
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      ATCCCTCACTATCTCTGTTGGATCATC--------------------------------- 1025
consensus_11008#2      ATCCCTCACTATCTCTGTAGGATCATCCGTTATCAGGTCTGACACATCCAAATCCC---- 1003
                                                                                   

consensus_11008#0      CGCTTTTTCCCGTAACTCTGACCAGAGCTCATCATCAGAAAGTGGAGGAGATTTACCAAT 1092
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      ------------------------------------------------------------
consensus_11008#2      ------------------------------------------------------------
                                                                                   

consensus_11008#0      CTCTACTTCAAAACGATATCTTGCTTTCTCAGTATTTATGTCCTTTACCATCAGGAGTTT 1152
consensus_11008#3      ------------------------------------------------------------
consensus_11008#1      ------------------------------------------------------------
consensus_11008#2      ------------------------------------------------------------
                                                                                   

consensus_11008#0      CTGGCTGCGCCTTACATCAAGCAGCTCAGCAGC 1185
consensus_11008#3      ---------------------------------
consensus_11008#1      ---------------------------------
consensus_11008#2      ---------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)