|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1440 fasta sequence
[TCTCCCCAACCAAACCCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTAGGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGAGCAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGA-CCAAGTACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCTTGACATTTTACCTCTGCCCATCTAATAATATGAAATGTGATATGCAGTATGG]
[+] EMBL CB623364 [TCTCCCCAACCAAACCCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAG ]
[+] EMBL AK099234 [ CCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTAGGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGAGCAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGA CCAAGTACTACAAACCCTCATGGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCCTGACATTTTACCTCTGCCCATCTAATAATATGAAATGT ]
[+] EMBL CB657847 [ TGAAAGAAGATGAGAGGGCTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCA ]
[+] EMBL CB652010 [ CCGGCGCGACGTCGACGGCGCGGCGGCACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGACTTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTG ]
[+] EMBL CB619323 [ agaagACCGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAGTACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGACGTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCCCTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACCAACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTACGTGCCCGTGACAGTCTCCGCTT ]
[+] EMBL AK059270 [ ACCGACCAGCACATCTACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATGGAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTTCTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCAGTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTAGGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGGGCAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGA CCAAGTACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCTTGACATTTTACCTCTGCCCATCTAATAATATGAAATGTGATATGCAGTATGG]
[+] EMBL BQ906463 [ CCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGACCCACGTACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCAACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATCTTACAGCTTGACATTTTACCTCTCCCCATCTAATAATATNACATGTGAgtaaaaaa ]
consensusID : consensus_11015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[CAAGAGGGGGAAAGCAGAAGGGGGTTTTTTGGGAGCAAATGTGATCCTCAAGCAGTTCCAGGAAGGCCCAAAAATCAGGGGGGTTGGTTTCCTTTTGCAAGGACCCCCTCCTTGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTTCCAGGGGAGGGTTCAACCCCTGTTTGAAGAAGAACATCCCCAAGGGTTAGGTAAAATCCGGTTTGCCCAAGGCGGGGACAGAGTTCAAGGTTTTTGTCCGTGGGAAGTCCTTCGATGCCGTTTTCCCCAAAATTCCGTTTGTGCCGCCCAAGTATTACAAACCCTCATAGATTTGTACAAAGGAGGCTCCTTCGGTTGAAATTTTTTCATG]
[-] EMBL CB657848 [CAAGAGGGGGAAAGCAGAAGGGGGTTTTTTGGGAGCAAATGTGATCCTCAAGCAGTTCCAGGAAGGCCCAAAAATCAGGGGGGTTGGTTTCCTTTTGCAAGGACCCCCTCCTTGGAGTCATAGTGAGATTGTGAGCAACTCCGGGGAGAACATTGGTGAGGTTTCCAGGGGAGGGTTCAACCCCTGTTTGAAGAAGAACATCCCCAAGGGTTAGGTAAAATCCGGTTTGCCCAAGGCGGGGACAGAGTTCAAGGTTTTTGTCCGTGGGAAGTCCTTCGATGCCGTTTTCCCCAAAATTCCGTTTGTGCCGCCCAAGTATTACAAACCCTCATAGATTTGTACAAAGGAGGCTCCTTCGGTTGAAATTTTTTCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11015#0 TCTCCCCAACCAAACCCGCGAAACCCCCACAAACGACGGTGGTGAAAGAAGATGAGAGGG 60
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 CTACTCGCGTGCGCCACGCTCGCCCGCCGCGCCGCCGGCGCGACGTCGACGGCGCGGCGG 120
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 CACCTGGCGGGCGCGGCCGAGGCGGCGGAGGCGGAGCTGAAGAAGACGGCGCTGTACGAC 180
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 TTCCACGTCGCGCACGGCGGGAAGATGGTGCCGTTCGCCGGGTGGAGCATGCCCATCCAG 240
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 TACAAGGACACCATCATGGACTCCACCCTCAACTGCCGCGCCAACGGCAGCCTCTTCGAC 300
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 GTCTCCCACATGTGCGGCCTCAGCCTCCACGGCCGCCAGGCCATCCCCTTCCTCGAGTCC 360
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 CTCGTCGTCGCCGACGTCGCGGCGCTCAAGGACGGCACCGGGACGCTCACCGTCTTCACC 420
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 AACGACCGCGGCGGCGCCATCGACGACTCCGTCGTTACCAAGGTCACCGACCAGCACATC 480
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 TACCTCGTCGTCAACGCCGGGTGCAGGGACAAGGATCTCGCCCACATTGGGGAGCACATG 540
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 GAGGCCTTCAACAAGAAGGGCGGCGACGTCAAGTGGCACGTCCACGATGAGCGCTCGCTT 600
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 CTTGCATTGCAGGGACCTCTTGCTGCACCAACTCTCCAGTTGCTGACAAAAGAAGATTTA 660
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 AGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTC 720
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 ACCAGAACTGGTTATACCGGTGAAGATGGGTTTGAAATCTCTGTTCCATCAGAGAATGCA 780
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 GTTGATCTTGCAAAGGCCCTCCTGGAGAAATCTGAAGGCAAGGTGAGACTGACTGGTTTA 840
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 GGTGCCCGTGACAGTCTCCGCTTGGAGGCTGGCCTCTGCCTGTACGGCAACGACATGGAG 900
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 CAACACATCACACCAGTTGAGGCTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCA 960
consensus_11015#1 --------------------------------------------CAAGAGGGGGAAAGCA 16
******* ********
consensus_11015#0 GAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTCCAGGAAGGCCCAAAGATC 1020
consensus_11015#1 GAAGGGGGTTTTTTGGGAGCAAATGTGATCCTCAAGCAGTTCCAGGAAGGCCCAAAAATC 76
***** ** ** ******** ***************** **************** ***
consensus_11015#0 AGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGC 1080
consensus_11015#1 AGGGGGGTTGGTTTCCTTTTGCAAGGACCCCCTCCTTGGAGTCATAGTGAGATTGTGAGC 136
*** * ** *** **** * ********* ****** ***********************
consensus_11015#0 AACTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAG 1140
consensus_11015#1 AACTCCGGGGAGAACATTGGTGAGGTTTCCAGGGGAGGGTTCAACCCCTGTTTGAAGAAG 196
*************************** **** ********** ****** *********
consensus_11015#0 AACATCGCCATGGGCTACGTAAAATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTT 1200
consensus_11015#1 AACATCCCCAAGGGTTAGGTAAAATCCGGTTTGCCCAAGGCGGGGACAGAGTTCAAGGTT 256
****** *** *** ** **************** ****** ******************
consensus_11015#0 GTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATGCCGTTCGTGCCGACCAAG 1260
consensus_11015#1 TTTGTCCGTGGGAAGTCCTTCGATGCCGTTTTCCCCAAAATTCCGTTTGTGCCGCCCAAG 316
* **************** ********* ** **** ** ***** ****** *****
consensus_11015#0 TACTACAAACCCTCATAGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGC 1320
consensus_11015#1 TATTACAAACCCTCATAGATTTGTACAAAGGAGGCTCCTTCGGTTGAAATTTTTTCATG- 375
** ***************************** ******************** *****
consensus_11015#0 AACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAAGGTCTCATC 1380
consensus_11015#1 ------------------------------------------------------------
consensus_11015#0 TTACAGCTTGACATTTTACCTCTGCCCATCTAATAATATGAAATGTGATATGCAGTATGG 1440
consensus_11015#1 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||