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Oryza sativa
cluster # 11025 cluster # 11025       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11025#0 length = 1451 sequences # 3  
consensus_11025#1 length = 807 sequences # 2  
consensus_11025#2 length = 537 sequences # 2  
consensus_11025#3 length = 451 sequences # 1  

consensusID : consensus_11025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1451
fasta sequence
                              [CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAACTGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGATAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGA-TTTGGTAGAGTCTACAAAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCGCAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGGTCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTGAAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACCTGTTTTCGAGGGTAATGGTACCACTCCCATGGTTCACCAGAATGAAAATTGCACTAGGTGCAGCAAAAGGACTTGCTTTTCTTCATGAAGCTGAGAAGCCAGTCATTTATCGGGATTTCAAGACATCAAATATATTACTTGATGAGGAATACAATGCGAAGCTCTCTGACTTTGGGCTCGCAAAAGATGGACCAGTCGGCGACAAATCACATGTTTCAACACGAATCATGGGAACCTACGGTTATGCAGCCCCGGAGTACATCATGACAGGGCATCTGACAGCGATGAGCGACGTATACAGCTACGGGGTCGTGCTCCTTGAGCTCTTGACAGGGCGCAAATCATTGGACAAGTCCAGGCCAGTCAGGGAGCAGACATTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGCATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGATGCTGGCCTACCATTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCGACATTGTCGCCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGTAAAAAAAAGGA]

[+] EMBL AK065635             [CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAACTGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGATAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGA TTTGGTAGAGTCTACAAAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCGCAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGGTCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTGAAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACCTGTTTTCGAGGGTAATGGTACCACTCCCATGGTTCACCAGAATGAAAATTGCACTAGGTGCAGCAAAAGGACTTGCTTTTCTTCATGAAGCTGAGAAGCCAGTCATTTATCGGGATTTCAAGACATCAAATATATTACTTGATGAGGAATACAATGCGAAGCTCTCTGACTTTGGGCTCGCAAAAGATGGACCAGTCGGCGACAAATCACATGTTTCAACACGAATCATGGGAACCTACGGTTATGCAGCCCCGGAGTACATCATGACAGGGCATCTGACAGCGATGAGCGACGTATACAGCTACGGGGTCGTGCTCCTTGAGCTCTTGACAGGGCGCAAATCATTGGACAAGTCCAGGCCAGTCAGGGAGCAGACATTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGCATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGATGCTGGCCTACCATTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCGACATTGTCGCCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTTTACC                                        ]
[+] EMBL CF589223             [CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAACTGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGATAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGANTTTGGTAGAGTCTACAAAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCGCAGTGAAGGTCCATGATGGAGACAATAGTGTCCAGGGGCATAGAGAGTGGCTGGCTGAGGTCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTGAAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACCTGTTTTCGAGGGTAATGGTACCACTCCCATGGTTCACCAGAATGAAAATTGCACTANGTGCAGCAAAAGGACTTGCTTTTCTTCATGAAGCTGAGAAGCCAGTCATTTATCGGGGATTCAAGACATCAAATATATTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB621170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACCACTCCCATGGTTCACCAGAATGAAAATTGCACTAGGTGCAGCAAAAGGACTTGCTTTTCTTCATGAAGCTGAGAAGCCAGTCATTTATCGGGATTTCAAGACATCAAATATATTACTTGATGAGGAATACAATGCGAAGCTCTCTGACTTTGGGCTCGCAAAAGATGGACCAGTCGGCGACAAATCACATGTTTCAACACGAATCATGGGAACCTACGGTTATGCAGCCCCGGAGTACATCATGACAGGGCATCTGACAGCGATGAGCGACGTATACAGCTACGGGGTCGTGCTCCTTGAGCTCTTGACAGGGCGCAAATCATTGGACAAGTCCAGGCCAGTCAGGGAGCAGACATTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGCATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGATGCTGGCCTACCATTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCGACATTGTCGCCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGTAAAAAAAAGGA]


>consensus_11025#0 CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTA TTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCAT ACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCAT CTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAAC TGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGA TAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGATTTGGTAGAGTCTACA AAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCG CAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGG TCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTG AAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACC TGTTTTCGAGGGTAATGGTACCACTCCCATGGTTCACCAGAATGAAAATTGCACTAGGTG CAGCAAAAGGACTTGCTTTTCTTCATGAAGCTGAGAAGCCAGTCATTTATCGGGATTTCA AGACATCAAATATATTACTTGATGAGGAATACAATGCGAAGCTCTCTGACTTTGGGCTCG CAAAAGATGGACCAGTCGGCGACAAATCACATGTTTCAACACGAATCATGGGAACCTACG GTTATGCAGCCCCGGAGTACATCATGACAGGGCATCTGACAGCGATGAGCGACGTATACA GCTACGGGGTCGTGCTCCTTGAGCTCTTGACAGGGCGCAAATCATTGGACAAGTCCAGGC CAGTCAGGGAGCAGACATTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGG TTCTTGGCATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGA CGGCGATGCTGGCCTACCATTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCG ACATTGTCGCCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGG TTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCC ATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTA ATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATC TAATGTTTGACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGT AAAAAAAAGGA



consensusID : consensus_11025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 807
fasta sequence
                              [CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAACTGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGATAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGATTTGGTAGAGTCTACAAAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCGCAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGGTCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTGAAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACCTGTTTTCGAGTAAGGCTAAACCATGTTACTTGTTTTGCTGAATTTCAATTTTACCTTCATAATGTAGCACTTTATCTTTTGATTACATGAGTCCAACAGTGCGAGTGTGGAACAGAATTCAGATACGAGAGAATTAAAATGGGATTTCCATTTTATATGATACACTATGNCATAAATCATTTTCTTTTGACAGATGCAATAAATACT]

[+] EMBL CB621169             [CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAACTGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGATAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGATTTGGTAGAGTCTACAAAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCGCAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGGTCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTGAAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACCTGTTTTCGAGTAAGGCTAAACCATGTTACTTGTTTTGCTGAATTTCAATTTTACCTTCATAATGTAGCACTTTATCTTTTGATTACATGAGTCCAACAGTGCGAGTGTGGAACAGAATTCAGATACGAGAGAATTAAAATGGGATTTCCATTTTATATGATACACTATGNCATAAATCATTTTCTTTTGACAGATGCAATAAATACT]
[+] EMBL CF308070             [CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_11025#1 CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTA TTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCAT ACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCAT CTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAAC TGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGA TAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGATTTGGTAGAGTCTACA AAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCG CAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGG TCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTG AAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACC TGTTTTCGAGTAAGGCTAAACCATGTTACTTGTTTTGCTGAATTTCAATTTTACCTTCAT AATGTAGCACTTTATCTTTTGATTACATGAGTCCAACAGTGCGAGTGTGGAACAGAATTC AGATACGAGAGAATTAAAATGGGATTTCCATTTTATATGATACACTATGNCATAAATCAT TTTCTTTTGACAGATGCAATAAATACT



consensusID : consensus_11025#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence
                              [GAGCAGACATTGGCAAACTGGGCATTCCCA-ATGCTGAT-AC-AGAAGAAGAAGGTTCTTGGCATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGAATG-TGGC-CTACCATTGCCTCAACCGCAACCC-CAAGG-TAGGCCGTTGATGCGCGACATTGTC-GCCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGTACCTTTACCTTTTATAAACTAGGTGAAACCCCGCGCATTGCTGCGGGAATTTA--A--AAAAAAAAAAAA]

[-] EMBL CF308069             [GAGCAGACATTGGCAAACTGGGCATTCCCA ATGCTGAT AC AGAAGAAGAAGGTTCTTGGCATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGAATG TGGC CTACCATTGCCTCAACCGCAACCC CAAGG TAGGCCGTTGATGCGCGACATTGTC GCCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGTACCTTTACCTTTTATAAACTAGGTGAAACCCCGCGCATTGCTGCGGGAATTTA  A  AAAAAAAA    ]
[+] EMBL BI811784             [                ACTGGCAATTCCCACATGCTGATCACAAGAAGAAGAA GTTCTTGGCATAGTAGA CCCAGGCTCGCCGAGGACTACCCGGTGAA GCAGTCCAGAAGACGGCG ATGCTGGCACTACCATTGCCTCAACCGCAACCCACAAGGCTA GCCGTTGATGCGCGACATTGTCAGCCA CTTGGAGCCTCTTCAGCAGATGGAGGAGGATCACAGTATCA TTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGTACCTTTACCTTTTATAAACTAGGTGAAACCCCGCACATTGCTGCGGGAATTTAGTATGATAAAAAAAAAA]


>consensus_11025#2 GAGCAGACATTGGCAAACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGC ATAGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGAAT GTGGCCTACCATTGCCTCAACCGCAACCCCAAGGTAGGCCGTTGATGCGCGACATTGTCG CCACCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCAGTATCAGTTTGGTTAGTGGCA CTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACAAAGATGCCATATCACCA TATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTT TGCTAAGAAGGTATATGTAATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTG ACATGGGAAGTGGTTTTTTACCCTTCGAGGAGATGTCCTCTTATCTTATGTACCTTTACC TTTTATAAACTAGGTGAAACCCCGCGCATTGCTGCGGGAATTTAAAAAAAAAAAAAA



consensusID : consensus_11025#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence
                              [TGTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGCATAGGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGATGTCTGGCCTACCCTTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCGACATTGTCGCCCCCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCCGTATCCGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACCAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCCTTTTAGGTTTGTTTGTGTATCTAATGTTTGACCTGGGAAGTGGTTTTTTACCCCTTAAAAAAAAAA]

[+] EMBL BI812245             [TGTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGCATAGGTAGACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGATGTCTGGCCTACCCTTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCGACATTGTCGCCCCCTTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCCGTATCCGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACCAAGATGCCATATCACCATATGTTTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTAAGAAGGTATATGTAATATAGTATCCTTTTAGGTTTGTTTGTGTATCTAATGTTTGACCTGGGAAGTGGTTTTTTACCCCTTAAAAAAAAAA]


>consensus_11025#3 TGTGGCAGACTGGGCATTCCCAATGCTGATACAGAAGAAGAAGGTTCTTGGCATAGGTAG ACCCCAGGCTCGCCGAGGACTACCCGGTGAAGGCAGTCCAGAAGACGGCGATGTCTGGCC TACCCTTGCCTCAACCGCAACCCCAAGGCTAGGCCGTTGATGCGCGACATTGTCGCCCCC TTGGAGCCTCTTCAGCAGATGGAGGAGGATCCCCGTATCCGTTTGGTTAGTGGCACTGAA GTGTGAGAGCTTCATCTTGTTCAGACTTCAGAGAAACCAAGATGCCATATCACCATATGT TTGATCATAGTAGCTAATTGAGTGCTTGGTCTGTATATAGTAGGTAATTGAGTTTTGCTA AGAAGGTATATGTAATATAGTATCCTTTTAGGTTTGTTTGTGTATCTAATGTTTGACCTG GGAAGTGGTTTTTTACCCCTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGGTATTA 60
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      TTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAATCCAT 120
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      ACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAGCCCAT 180
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      CTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGAGGAAC 240
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      TGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAAGAGGA 300
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      TAACAAAAAATTTCAGGCAGGATTCATTACTAGGGGGAGGTGGATTTGGTAGAGTCTACA 360
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      AAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGCGAGTCG 420
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      CAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGGCTGAGG 480
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      TCATATTTCTTGGGCAGCTCTCTCACCCAAATTTAGTGAAGTTGATCGGGTATTGTTGTG 540
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      AAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGAATCACACC 600
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      TGTTTTCGAGGGTAATGGTACCACTCCCATGGTTCACCAGAATGAAAATTGCACTAGGTG 660
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      CAGCAAAAGGACTTGCTTTTCTTCATGAAGCTGAGAAGCCAGTCATTTATCGGGATTTCA 720
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      AGACATCAAATATATTACTTGATGAGGAATACAATGCGAAGCTCTCTGACTTTGGGCTCG 780
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      CAAAAGATGGACCAGTCGGCGACAAATCACATGTTTCAACACGAATCATGGGAACCTACG 840
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      GTTATGCAGCCCCGGAGTACATCATGACAGGGCATCTGACAGCGATGAGCGACGTATACA 900
consensus_11025#1      ------------------------------------------------------------
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      GCTACGGGGTCGTGCTCCTTGAGCTCTTGACAGGGCGCAAATCATTGGACAAGTCCAGGC 960
consensus_11025#1      -----CTTCTTGGTGTTCTGGGTCAGACAGAGAAAGCTGAGTTGTTCTTTAGGAATTGGG 55
                                                                                   

consensus_11025#2      --------GAGCAGACATTGGCAAACTGGGCATTCCCAAT----GCTGATACAGAAGAAG 48
consensus_11025#3      ----------------TGTGGCAGACTGGGCATTCCCAAT----GCTGATACAGAAGAAG 40
consensus_11025#0      CAGTCAGGGAGCAGACATTGGCAGACTGGGCATTCCCAAT----GCTGATACAGAAGAAG 1016
consensus_11025#1      TATTATTTTTTTTGAAAGCGCGGAATTGGGTATTATGGGTAACTGCTGGTTTAAAGGGAA 115
                                          *    * **** ***     *    **** *  * * * * 

consensus_11025#2      AAGGTTCTT-GGCATAG-TAGACCCCAGGCTC---GCCGAGGACTACCCG----GTGAAG 99
consensus_11025#3      AAGGTTCTT-GGCATAGGTAGACCCCAGGCTC---GCCGAGGACTACCCG----GTGAAG 92
consensus_11025#0      AAGGTTCTT-GGCATAG-TAGACCCCAGGCTC---GCCGAGGACTACCCG----GTGAAG 1067
consensus_11025#1      TCCATACTTTAACAGGGTTTCTTCCAATGCAACAAAATCAGAATCACCTAAAATGCAGAG 175
                           * ***   **  * *    ** * **         ** *  ***      *   **

consensus_11025#2      GCAGTCC-AGAAGACGGCGA-ATGTGGCCTACCATTGCC-TCAACCGCAACCCCAAGG-T 155
consensus_11025#3      GCAGTCC-AGAAGACGGCGATGTCTGGCCTACCCTTGCC-TCAACCGCAACCCCAAGGCT 150
consensus_11025#0      GCAGTCC-AGAAGACGGCGATGC-TGGCCTACCATTGCC-TCAACCGCAACCCCAAGGCT 1124
consensus_11025#1      CCCATCTGAGAGAAAAGAAAAGGATGACAGCATGCTGCCGTCGAACGCGAAAGAGGTGGA 235
                        *  **  ***  *  *  *    ** *       **** ** * *** *       *  

consensus_11025#2      AGGCCGTTGATGCGCGACA--TTGTCGCCACCTTGGAGCCTCTTCAGCAGATGG----AG 209
consensus_11025#3      AGGCCGTTGATGCGCGACA--TTGTCGCCCCCTTGGAGCCTCTTCAGCAGATGG----AG 204
consensus_11025#0      AGGCCGTTGATGCGCGACA--TTGTCGCCACCTTGGAGCCTCTTCAGCAGATGG----AG 1178
consensus_11025#1      GGAACTGAGAAGGGAGTCGGCTCGGAACCCTCTGATAGCATTCACATTTGAGGAGCTCAA 295
                        *  *   ** * * * *   * *   **  **   *** *   **   ** *     * 

consensus_11025#2      GAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAG 269
consensus_11025#3      GAGGATCCCCGTATCCGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAG 264
consensus_11025#0      GAGGATCCCAGTATCAGTTTGGTTAGTGGCACTGAAGTGTGAGAGCTTCATCTTGTTCAG 1238
consensus_11025#1      GAGGATAACAAAAAATTTCAGGCAGGATTCATTACTAGG-GGGAGGTGGATTTGGTAGAG 354
                       ******  *   *    *  **   *   ** *     * * *** *  ** * **  **

consensus_11025#2      ACTTCAGAGAAACAAAGAT--GCCATATCACCATATGTTTGATCATAGT--AGCTAAT-T 324
consensus_11025#3      ACTTCAGAGAAACCAAGAT--GCCATATCACCATATGTTTGATCATAGT--AGCTAAT-T 319
consensus_11025#0      ACTTCAGAGAAACAAAGAT--GCCATATCACCATATGTTTGATCATAGT--AGCTAAT-T 1293
consensus_11025#1      TCTACAAAGGATACATCACCAGTGATCTTCGCGAAGGATTAACAATAGAGGAGCCACTGC 414
                        ** ** ** *   *  *   *  ** *   *  * * ** *  ****   *** * *  

consensus_11025#2      GAGT-GCTTGGTCTGTATATAGTAGGTAATTGAGTTTT-----GCTAAGAAGGTATATGT 378
consensus_11025#3      GAGT-GCTTGGTCTGTATATAGTAGGTAATTGAGTTTT-----GCTAAGAAGGTATATGT 373
consensus_11025#0      GAGT-GCTTGGTCTGTATATAGTAGGTAATTGAGTTTT-----GCTAAGAAGGTATATGT 1347
consensus_11025#1      GAGTCGCAGTGAAGGTCCATGATGGAGACAATAGTTTCCAGGGGCATAGAGAGTGGCTGG 474
                       **** **   *   **  **  * *  *    *****      **  ***  **   ** 

consensus_11025#2      AATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTT 438
consensus_11025#3      AATATAGTATCCTTTTAGGTTTGTTTGTGTATCTAATGTTTGACCTGGGAAGTGGTTTTT 433
consensus_11025#0      AATATAGTATCATTTTAGGTTTGTTTGTGTATCTAATGTTTGACATGGGAAGTGGTTTTT 1407
consensus_11025#1      CTGAGGTCATATTTCTTGGGCAGCTCTCTCACCCAA-ATTTAGTGAAGTTGATCGGGTAT 533
                          *    **  ** * **   * *     * * **  ***      *    * *  * *

consensus_11025#2      TACCCTTCGAGGAGATGTCCTCTTATCTTATGTACCTTTACCTTTTATAAACTAGGTGAA 498
consensus_11025#3      TACCCCTTAAAAAAAAAA------------------------------------------ 451
consensus_11025#0      TACCCTTCGAGGAGATGTCCTCTTATCTTATGTAAAAAAAAGGA---------------- 1451
consensus_11025#1      TGTTG-TGAAGATGACCACAGAGTACTTGTTTATGAGTTCATGCCCCTGGGAAGTGTGGA 592
                       *     *  *    *                                             

consensus_11025#2      ACCCCGCGCATTGCTGCGGGAATTTAAAAAAAAAAAAAA--------------------- 537
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      ------------------------------------------------------------
consensus_11025#1      ATCACACCTGTTTTCGAGTAAGGCTAAACCATGTTACTTGTTTTGCTGAATTTCAATTTT 652
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      ------------------------------------------------------------
consensus_11025#1      ACCTTCATAATGTAGCACTTTATCTTTTGATTACATGAGTCCAACAGTGCGAGTGTGGAA 712
                                                                                   

consensus_11025#2      ------------------------------------------------------------
consensus_11025#3      ------------------------------------------------------------
consensus_11025#0      ------------------------------------------------------------
consensus_11025#1      CAGAATTCAGATACGAGAGAATTAAAATGGGATTTCCATTTTATATGATACACTATGNCA 772
                                                                                   

consensus_11025#2      -----------------------------------
consensus_11025#3      -----------------------------------
consensus_11025#0      -----------------------------------
consensus_11025#1      TAAATCATTTTCTTTTGACAGATGCAATAAATACT 807
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)