These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2002 fasta sequence [GCAAGAAGAGGAAAGCAAGACGCGTCAAATCTATCAATCAGCTTCAGCCAAAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCACATCCTACCACAGGAAGCCTTTCAAACAACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGCTTTTGTGCAGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTTCTCATAATAACGCAATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAGGAGTAGGATAAACTTTAAGAGC] [+] EMBL AK071754 [GCAAGAAGAGGAAAGCAAGACGCGTCAAATCTATCAATCAGCTTCAGCCAAAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCACATCCTACCACAGGAAGCCTTTCAAACAACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGCTTTTGTGCAGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTTCTCATAATAACGCAATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAGGAGTAGGAT ] [-] EMBL CB664819 [ ATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTGGAGTGAGGACTTTTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGGTGGTGTCCTTGCAAAAGTTTCTCATAATAACGCAATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAGGAGTAGGATAAACTTTAAGAGC] consensusID : consensus_11026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1316 fasta sequence [GTCTTAATAACCAACCAATTTATCATTGCATTGCATTTCAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCA] [+] EMBL AK071958 [GTCTTAATAACCAACCAATTTATCATTGCATTGCATTTCAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCA] consensusID : consensus_11026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence [AAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGANAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTA] [+] EMBL CB664818 [AAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGANAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTA] [+] EMBL D43605 [ GCATCCGATCGCCGGCGACGACCGAATCTNTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCNATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGNCTGTTCTCGGAGGCCCTNGAGAGCGGGACCTTNCAAGGNTTCTTCAACCTCATCTCCGT ] consensusID : consensus_11026#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence [TTTGCCGCAATGGCGTCTAAACCAAGCAGCCGAGCGGAAAGCAACCAGGNGGCGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCGCGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGTTCTTCAGCCTCGTCTCCGTCTTCCAGACGCA-TCGGAGCCGGCCTTCTGCGGCCTCGCCACGCTCGCCGTCGTCCTCAACGCGCTCCGCATCGACCCGGGGCGGCGGTGGAANGGNCCCTGGCGGTGGTTCGACGAGTCCATGCTTCGACTG-TGCGAACAACTCGACACGGTCAGGGCGGAGGGGATCACCTTCGGCAAGGTCGCCTGCCTCGCCCACTGCTCCGGCGCCGACGTCCGCACCTTCCGCGCCGCCCAGGCCACGCTCGCCGACCTCCGCCGCCACCTCCTGCGCTGCGCCTCCTCCCAGGATTGCCATCTCGTCGCCTCCTACCACCGGAAGCTTCTCGGCCAGACTGGAACAGGGCATTTCTCGCCGATTGGCGGCTACCATGCTGGGCAGGACATGGCGCTGATCCTGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGCTGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGGTTCATGCTTATCTNCAGGAATACTGAAGCTCCTTTATTGATCCGTGCAGTGAATTGCAGGGATGAAAGCTGGCAAAGCATGGCA] [+] EMBL AU108710 [TTTGCCGCAATGGCGTCTAAACCAAGCAGCCGAGCGGAAAGCAACCAGGNGGCGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCGCGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGTTCTTCAGCCTCGTCTCCGTCTTCCAGACGCA TCGGAGCCGGCCTTCTGCGGCCTCGCCACGCTCGCCGTCGTCCTCAACGCGCTCCGCATCGACCCGGGGCGGCGGTGGAANGGNCCCTGGCGGTGGTTCGACGAGTCCATGCTTCGACTG TGCGAACAACT ] [+] EMBL CB646798 [ AAACCAAGCAGCCGAGCGGAAAGCAACCAGGCGGCGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCGCGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGTTCTTCAGCCTCGTCTCCGTCTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCACGCTCGCCGTCGTCCTCAACGCGCTCCGCATCGACCCGGGGCGGCGGTGGAAGGGCCCCTGGCGGTGGTTCGACGAGTCCATGC TCGACTGCTGCGAGCACCTCGACACGGTCAGGGCGGAGGGGATCACCTTCGGCAAGGTCGCCTGCCTCGCCCACTGCTCCGGCGCCGACGTCCGCACCTTCCGCGCCGCCCAGGCCACGCTCGCCGACCTCCGCCGCCACCTCCTGCGCTGCGCCTCCTCCCAGGATTGCCATCTCGTCGCCTCCTACCACCGGAAGCTTCTCGGCCAGACTGGAACAGGGCATTTCTCGCCGATTGGCGGCTACCATGCTGGGCAGGACATGGCGCTGATCCTGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGCTGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGGTTCATGCTTATCTNCAGGAATACTGAAGCTCCTTTATTGATCCGTGCAGTGAATTGCAGGGATGAAAGCTGGCAAAGCATGGCA] consensusID : consensus_11026#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [TCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGGTTGTTTTTGTTAATCCTTCTCTTCTTCATTTCAAGGTCTTAATAACCAACCAATTTATCATTG] [+] EMBL AF439787 [TCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGGTTGTTTTTGTTAATCCTTCTCTTCTTCATTTCAAGGTCTTAATAACCAACCAATTTATCATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 --------------------------------------GCAAGAAGAGGAAAGCAAGACG 22 consensus_11026#1 GTCTTAATAACCAACCAATTTATCATTGCATTGCATTTCAGACTGGAACCGGCCATTTCT 60 consensus_11026#2 ----------------------------AAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGC 32 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 CGTCAAATCTATCAATCAGCTTCAGCCAAAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGC 82 consensus_11026#1 CTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCT 120 consensus_11026#2 ACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGA 92 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 --------TTTGCCGCAATGGCGTCTAAACCAAGCAGCCGAGCGGAAAGCAACCAGGNGG 52 consensus_11026#0 ACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGA 142 consensus_11026#1 TCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTG 180 consensus_11026#2 TGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCG 152 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 CGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCG 112 consensus_11026#0 TGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCG 202 consensus_11026#1 ATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTT 240 consensus_11026#2 CGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCT 212 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 CGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGT 172 consensus_11026#0 CGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCT 262 consensus_11026#1 CATTGCTCTACACAGTGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCA 300 consensus_11026#2 TCTTCAACCTCATCT-CCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTC-GC 270 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 TCTTCAGCCTCGTCT-CCGTCTTCCAGACGCA-TCGGAGCCGGCCTTCTGCGGCCTC-GC 229 consensus_11026#0 TCTTCAACCTCATCT-CCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTC-GC 320 consensus_11026#1 TGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGT 360 consensus_11026#2 CTCCCTCTCCGTCGTCCTCAAC-GCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCC 329 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 CACGCTCGCCGTCGTCCTCAAC-GCGCTCCGCATCGACCCGGGGCGGCGGTGGAANGGNC 288 consensus_11026#0 CTCCCTCTCCGTCGTCCTCAAC-GCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCC 379 consensus_11026#1 CCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAG 420 consensus_11026#2 CCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGG 389 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 CCTGGCGGTGGTTCGACGAGTCCATGCTTCGACTGTGCGAACAACTCGACACGGTCAGGG 348 consensus_11026#0 CCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGG 439 consensus_11026#1 TTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTT 480 consensus_11026#2 CGGAGGGCATCAC-CTTCGCCAAACTCGCC-TGCCTCGCGCACTGCGCCGGTGCCAATGT 447 consensus_11026#4 ---------TCAC-CTTCGCCAAACTCGCC-TGCCTCGCGCACTGCGCCGGTGCCAATGT 49 consensus_11026#3 CGGAGGGGATCAC-CTTCGGCAAGGTCGCC-TGCCTCGCCCACTGCTCCGGCGCCGACGT 406 consensus_11026#0 CGGAGGGCATCAC-CTTCGCCAAACTCGCC-TGCCTCGCGCACTGCGCCGGTGCCAATGT 497 consensus_11026#1 TGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGT-CCGTGAA 539 * * ** * *** ** * * ** * * ** consensus_11026#2 CCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCG--------CCACCATCTC 499 consensus_11026#4 CCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCG--------CCACCATCTC 101 consensus_11026#3 CCGCACCTTCCGCGCCGCCCAGGCCACGCTCGCCGACCTCCG--------CCGCCACCTC 458 consensus_11026#0 CCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCG--------CCACCATCTC 549 consensus_11026#1 CTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTT 599 * ** * * * *** * * * * * consensus_11026#2 GTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTC 559 consensus_11026#4 GTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTC 161 consensus_11026#3 CTGCGCTGCGCCTCCTCCCAGGATTGCCATCTCGTCGCCTCCTACCACCGGAAGCTTCTC 518 consensus_11026#0 GTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCACATCCTACCACAGGAAGCCTTTC 609 consensus_11026#1 ACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGC-TAACAGGGAATCTTTC 658 ** ** **** * ** ** * * * ** ** * * ** consensus_11026#2 AAACAGA--------CTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCC 611 consensus_11026#4 AAACAGG--------TTGTTTTTGTTAATCCTTCTCTTCTTCAT---TTCAAGGTCTTAA 210 consensus_11026#3 GGCCAGA--------CTGGAACAGGGCATTTCTCGCCGATTGGCGGCTACCATGCTGGGC 570 consensus_11026#0 AAACA-A--------CTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCC 660 consensus_11026#1 ATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGA 718 * ** * * * consensus_11026#2 AAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCAC 671 consensus_11026#4 TAACCAACCAATTTATCATTG--------------------------------------- 231 consensus_11026#3 AGGACATGGCGCTGATCCTGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGC 630 consensus_11026#0 AAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCAC 720 consensus_11026#1 TGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGA 778 * * * consensus_11026#2 TCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGT 731 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 TGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGGT 690 consensus_11026#0 TCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGT 780 consensus_11026#1 TAT-GCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACG 837 consensus_11026#2 TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTG---------- 781 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 TCATGCTTATCTNCAGGAATACTGAAGCTCCTTTATTGATCCGTGCAGTG---------- 740 consensus_11026#0 TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGCTTTTGTGCA 840 consensus_11026#1 AGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATC 897 consensus_11026#2 -AGTTGCAGAGATGANAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTA----- 835 consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 -AATTGCAGGGATGAAAGCTGGCAAAGCATGGCA-------------------------- 773 consensus_11026#0 GAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGA 900 consensus_11026#1 CTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTT 957 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATC 960 consensus_11026#1 CAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCC 1017 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 CCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGA 1020 consensus_11026#1 ATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAAC 1077 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 AGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACT 1080 consensus_11026#1 AATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGG 1137 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 ACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCA 1140 consensus_11026#1 AACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTG 1197 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 GCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTC 1200 consensus_11026#1 ACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTT 1257 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTG 1260 consensus_11026#1 AGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCA- 1316 consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 CTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGT 1320 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATC 1380 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 CACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATC 1440 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCAT 1500 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGA 1560 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAA 1620 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 AGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAG 1680 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 TTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTA 1740 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 CCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGT 1800 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 AGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAG 1860 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 CGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTTCTCATAATAACGC 1920 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ------------------------------------------------------------ consensus_11026#4 ------------------------------------------------------------ consensus_11026#3 ------------------------------------------------------------ consensus_11026#0 AATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAG 1980 consensus_11026#1 ------------------------------------------------------------ consensus_11026#2 ---------------------- consensus_11026#4 ---------------------- consensus_11026#3 ---------------------- consensus_11026#0 GAGTAGGATAAACTTTAAGAGC 2002 consensus_11026#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||