These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1458 fasta sequence [ACACGCTTCCATCCCATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGGCTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCACCAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGTCGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGACGCCGTGGTGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT-CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACACTTGCA-GAGAACAGCTTTCAGATGCTGTCAACTGCAGAGAATTCAAAAAACTCTGTACGATCATGAGCATGAAACAATAGAGAATACACAGAAAAATTCAGTACCCAAAAAAA] [+] EMBL AK105193 [ACACGCTTCCATCCCATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGGCTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCACCAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGTCGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGACGCCGTGGTGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACA ] [+] EMBL CB679399 [ TCCATCCTATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACAGACTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGAGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACACTCGACGGCGGCTCCGCCTACGGGTTCCGCCCCGACCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGGCGCGGCGTCCCCTCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGACAAGGGAGCTCGGGACGACG ] [+] EMBL CB678383 [ ATCCCCCCTCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGGCTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCACCAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGTCGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGACGCCGTGGTGCTCGCGCTCGTCCC ] [-] EMBL CB679400 [ TGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACACCAATGTACTGTTCTAAGGAATAATAAGTAACCCATGAAC ] [-] EMBL CB678384 [ GCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACCGAGAGAACAAATATGTCCACCAATGTAGTGTTGGGATGAATAATAAGTAAACCATGAACACTTGCA GAAAAaaaagggg ] [+] EMBL AU183872 [ TGCCGGTGATCGGGGANATGCCTGGAGTGAAGGGTTGCTATGTCGCCNCCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGTGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTTCCCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTNAAAAANACTGAGAGAACAAATATGTACAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACACTTGCATGAGAACAGCTTTCAGATGCTGTCAACTGCAGAGAATTCAAAAA ] [+] EMBL C96958 [ GAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGNTGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTNCAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACACTTGCATGAGAACAGCTTTCAGATGCTGTCAACTGCAGAGAATTCATCACACTCTGTACGATCATGAGCATGAAACAATAGAGAATACACAGAAAAATTCAGTACCCAAAAAAA] consensusID : consensus_11029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [CGGCGGGGNGCCGNGNGNCGCGTNGGTGATTTNCGGCGNCGGGGTCGTCGGAGCGTCTACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTNTCCCGACCCTCGTNNAGAAGTCGTCCCCGGCCTGCNCCGCCTCGGGCAAGGCCGGCGGCTTCC] [+] EMBL AU108145 [CGGCGGGGNGCCGNGNGNCGCGTNGGTGATTTNCGGCGNCGGGGTCGTCGGAGCGTCTACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTNTCCCGACCCTCGTNNAGAAGTCGTCCCCGGCCTGCNCCGCCTCGGGCAAGGCCGGCGGCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11029#0 ACACGCTTCCATCCCATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGG-TGAT 59 consensus_11029#1 ----------------------------CGGCGG-GGNGCCGN-GNGNCGCGTNGGTGAT 30 ****** ** **** * * ***** * **** consensus_11029#0 TTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTC 119 consensus_11029#1 TTNCGGCGNCGGGGTCGTCGGAGCGTCTACGGCCTACTTCCTCTCCACCCACGCGGCCTC 90 ** ***** ***************** ******************************** consensus_11029#0 CCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGC 179 consensus_11029#1 CCCGACTNTCCCGACCCTCGTNNAGAAGTCGTCCCCGGCCTGCNCCGCCTCGGGCAAGGC 150 ******* ************* ******************** **************** consensus_11029#0 CGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCG 239 consensus_11029#1 CGGCGGCTTCC------------------------------------------------- 161 *********** consensus_11029#0 CGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGG 299 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGC 359 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGC 419 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCAC 479 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGT 539 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGA 599 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CGCCGTGGTGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTT 659 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACAT 719 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCC 779 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGA 839 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAA 899 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGA 959 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGG 1019 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 AGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGC 1079 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGC 1139 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATT 1199 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GTGATGAGTTTGCTTCCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTG 1259 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACAACAATGTACTGTACT 1319 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 GATGAATAATAAGTAAACCATGAACACTTGCAGAGAACAGCTTTCAGATGCTGTCAACTG 1379 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 CAGAGAATTCAAAAAACTCTGTACGATCATGAGCATGAAACAATAGAGAATACACAGAAA 1439 consensus_11029#1 ------------------------------------------------------------ consensus_11029#0 AATTCAGTACCCAAAAAAA 1458 consensus_11029#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||