These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTTTTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGATGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGCTTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGATAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAATTGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGGCCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATGGTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTTGACTGAATGGATGCGCTATACTTGCT] [+] EMBL CF323017 [GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTTTTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGATGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGCTTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGATAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAATTGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGGCCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATGGTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTTGACTGAATGGATGCGCTATACTTGCT] consensusID : consensus_1103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTTTTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAGCACTAAGGAAGAGCTTGATGCGCTTATTGGATCGATAAATGTTAAAGGCATAAGGG] [+] EMBL CF322875 [GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTTTTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAGCACTAAGGAAGAGCTTGATGCGCTTATTGGATCGATAAATGTTAAAGGCATAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1103#0 GGCCTTGAAAAAGACAGGTGCTACATCAAATATTGGTTTTTTAGGCATGAATGACGACTT 60 consensus_1103#1 GCCCTTGGAAAAGACAGGTACTACAACAGATATTGGTTTTTTAGGCATGAAGGACGACTT 60 * ***** *********** ***** ** ********************** ******** consensus_1103#0 TTTGTCTAAAGTGCAGATTCGAAAAAATGGTGTTACTACAGTCACTACTGAAGAGCTTGA 120 consensus_1103#1 TTTGTCGAAAGTGCAGATTCCAAATATTGTTTTTACTACAG-CACTAAGGAAGAGCTTGA 119 ****** ************* *** * ** * ********* ***** *********** consensus_1103#0 TGCGCTTATTGGATCGTTAAATGTTACAAGGCATAAGGGAGAGAGCACTGAAACGGCAGC 180 consensus_1103#1 TGCGCTTATTGGATCGATAAATGTTA-AAGGCATAAGGG--------------------- 157 **************** ********* ************ consensus_1103#0 TTGATAAGTTCTATAATACGATAATGTACTCAATTTTCATTCAAAGAAAAAAATATAAGA 240 consensus_1103#1 ------------------------------------------------------------ consensus_1103#0 TAATTCACTCATTGCTGTAGTTGGGTACTTTTTACATGTTTGATGGTAGCTTCTGTTAAT 300 consensus_1103#1 ------------------------------------------------------------ consensus_1103#0 TGTTGGAAGTGACAGATTAGCTGGAAAGAAGTTAATCATCCCATGTCAATTTTTTGAAGG 360 consensus_1103#1 ------------------------------------------------------------ consensus_1103#0 CCTACATCTAATTTTTTTAAAAAACAAAATGTTATTTAATGTACATAATGGCCCAGAATG 420 consensus_1103#1 ------------------------------------------------------------ consensus_1103#0 GTCTTTACTGGTGGAACATTCAGTTCAAGGCCTAAATAACACACCGCATCCTGCATTTTT 480 consensus_1103#1 ------------------------------------------------------------ consensus_1103#0 GACTGAATGGATGCGCTATACTTGCT 506 consensus_1103#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||