Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11033 cluster # 11033       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11033#0 length = 1805 sequences # 6  
consensus_11033#1 length = 388 sequences # 1  
consensus_11033#2 length = 328 sequences # 1  

consensusID : consensus_11033#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1805
fasta sequence
                              [ACTTGCCGCTTTCATGCACTGCCAGCACTCCTAATTTCGGATGCTTGTTGTCCGTCACGATTAATTCTGCTATGCTTCTCGTCCTTCTTCCGTATCCGGTCGGTCTCTCTCTGCTCATGGGAGCACAACAGCGAACGGAAGGCCATGGTGTCTCCGGTCACCTCGTAAGTCCCTCGTTGCGTCGCAGACTAATCAGCGAGAATTATCTCCTAAAATTCCGCCGAGTTGCTGGCTTGTTGCTGCCAGGAAATTCTCCAAATCACTGGACCTGATTAGCGTAGGAGAAATCAGCTTGACGAGCTGTAGTGCACCACATATGTACCTGTAGTGCACTATTGCTGTACTGACAAAGAGTAGGCAGAACAACAGCGCCAGCACGGCGAAGGAATAGAAGGAGAAGGAGAAGAAGGTGAACATGACCAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTGACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGTGTCGGGCTCCGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCTGCTCCTTCTTCTCCTCATCGTCGTAGAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGATTCGGTCGATTGCTGGTGGCTCCTGCTCCGCCATTGCCATGCCCCGGCATCATAGTAGTCGCCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCGTATCCGTACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACGACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGCAGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGACAAGGGATAACGATCGAGTGGCTGTGTGGACTGGAGTGGACAAGACAAGCAGGAGGTTAGTAAGGTCTTTTCGCTGCTCTAATTCATCACAACGAAATATAGCAAACCTTGCATCAGCTTGACATTTTTCCCTTCCAATAGTTTGAACCAAGAATGCAGCAGCTGTAACAGGGTCTACAAACAAACACAACTGGTGTGTCTAGTTCACGTTAAAATTGAAAGTTTGATTGAAATTGGAACGATGTGACGAAAATGTTAGAAGTTTATGTATGTAGGAAAGTTTTGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAC]

[+] EMBL AK069325             [ACTTGCCGCTTTCATGCACTGCCAGCACTCCTAATTTCGGATGCTTGTTGTCCGTCACGATTAATTCTGCTATGCTTCTCGTCCTTCTTCCGTATCCGGTCGGTCTCTCTCTGCTCATGGGAGCACAACAGCGAACGGAAGGCCATGGTGTCTCCGGTCACCTCGTAAGTCCCTCGTTGCGTCGCAGACTAATCAGCGAGAATTATCTCCTAAAATTCCGCCGAGTTGCTGGCTTGTTGCTGCCAGGAAATTCTCCAAATCACTGGACCTGATTAGCGTAGGAGAAATCAGCTTGACGAGCTGTAGTGCACCACATATGTACCTGTAGTGCACTATTGCTGTACTGACAAAGAGTAGGCAGAACAACAGCGCCAGCACGGCGAAGGAATAGAAGGAGAAGGAGAAGAAGGTGAACATGACCAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTGACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGTGTCGGGCTCCGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCTGCTCCTTCTTCTCCTCATCGTCGTAGAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGATTCGGTCGATTGCTGGTGGCTCCTGCTCCGCCATTGCCATGCCCCGGCATCATAGTAGTCGCCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCGTATCCGTACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACGACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGCAGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGACAAGGGATAACGATCGAGTGGCTGTGTGGACTGGAGTGGACAAGACAAGCAGGAGGTTAGTAAGGTCTTTTCGCTGCTCTAATTCATCACAACGAAATATAGCAAACCTTGCATCAGCTTGACATTTTTCCCTTCCAATAGTTTGAACCAAGAATGCAGCAGCTGTAACAGGGTCTACAAACAAACACAACTGGTGTGTCTAGTTCACGTTAAAATTGAAAGTTTGATTGAAATTGGAACGATGTGACGAAAATGTTAGAAGTTTATGTATGTAGGAAAGTTTTGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAC]
[+] EMBL CF294240             [                                                                                                                                                                                                                                                                                                                                                                                                                                    tttttttAAAAAGAGGCAAAGTGCTCCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTGACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGTGTCGGGCTCCGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCTGCTCCTTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AK060930             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGTGATAAGAGTCTGACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGTGTCGGGCTCCGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCTGCTCCTTCTTCTCCTCATCGTCGTAGAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGATTCGGTCGATTGCTGGTGGCTCCTGCTCCGCCATTGCCATGCCCCGGCATCATAGTAGTCGCCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCGTATCCGTACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACGACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGCAGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGACAAGGGATAACGATCGAG                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AK106055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGTGTCGGGCTCCGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCTGCTCCTTCTTCTCCTCATCGTCGTAGAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGATTCGGTCGATTGCTGGTGGCTCCTGCTCCGCCATTGCCATGCCCCGGCATCATAGTAGTCGCCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCGTATCCGTACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACGACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGCAGCGGCATAGCCATTGC                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF294731             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGCCCCGGCATCATAGTAGTCGCCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCGTATCCGTACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACGACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGCAGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGA                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF294239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAGGAGACGACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGCAGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGA                                                                                                                                                                                                                                                                                                                              ]


>consensus_11033#0 ACTTGCCGCTTTCATGCACTGCCAGCACTCCTAATTTCGGATGCTTGTTGTCCGTCACGA TTAATTCTGCTATGCTTCTCGTCCTTCTTCCGTATCCGGTCGGTCTCTCTCTGCTCATGG GAGCACAACAGCGAACGGAAGGCCATGGTGTCTCCGGTCACCTCGTAAGTCCCTCGTTGC GTCGCAGACTAATCAGCGAGAATTATCTCCTAAAATTCCGCCGAGTTGCTGGCTTGTTGC TGCCAGGAAATTCTCCAAATCACTGGACCTGATTAGCGTAGGAGAAATCAGCTTGACGAG CTGTAGTGCACCACATATGTACCTGTAGTGCACTATTGCTGTACTGACAAAGAGTAGGCA GAACAACAGCGCCAGCACGGCGAAGGAATAGAAGGAGAAGGAGAAGAAGGTGAACATGAC CAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTG ACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCT TCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGG CGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATG CCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCG GCAGCAGCCGCCGCCGTGTCGGGCTCCGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCTGC TCCTTCTTCTCCTCATCGTCGTAGAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGAT TCGGTCGATTGCTGGTGGCTCCTGCTCCGCCATTGCCATGCCCCGGCATCATAGTAGTCG CCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCGTATCCG TACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACGACCCAG GAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGCCCCGTG GCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAGAGCTTG GAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCGTCGTCG TATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCACCGCCTC CTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGGCAGCGA GGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCTGGAGCT GGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGCGGCGGC AGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGACAAGGGATAACGA TCGAGTGGCTGTGTGGACTGGAGTGGACAAGACAAGCAGGAGGTTAGTAAGGTCTTTTCG CTGCTCTAATTCATCACAACGAAATATAGCAAACCTTGCATCAGCTTGACATTTTTCCCT TCCAATAGTTTGAACCAAGAATGCAGCAGCTGTAACAGGGTCTACAAACAAACACAACTG GTGTGTCTAGTTCACGTTAAAATTGAAAGTTTGATTGAAATTGGAACGATGTGACGAAAA TGTTAGAAGTTTATGTATGTAGGAAAGTTTTGATGTGATGGAAAAGTTGGAAGTTTGAAG AAAAC



consensusID : consensus_11033#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [TTTTTTTTTTGGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGGGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGGCGTCGGNGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGGTGTCGGGCTCCGGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCGTGGCTCCTTCTTCTCCTCATCGTCGTAAAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGATTCGGTCGATTGCGTGGGTG]

[-] EMBL BQ908079             [TTTTTTTTTTGGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGGGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGGCGTCGGNGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGGCGGCAGCAGCCGCCGCCGGTGTCGGGCTCCGGGTGGCGTCCTCTTCTTCCCTGAGCTCTCCGTGGCTCCTTCTTCTCCTCATCGTCGTAAAGGAGGTCATCCCATCCTCCAAAACCGGAGCCGGATTCGGTCGATTGCGTGGGTG]


>consensus_11033#1 TTTTTTTTTTGGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTCTTCT TCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGA AGGCGCGTCAGCAGGGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGAC ATGCCGCCATTGCTGGCGTCGGNGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGG AGGCGGCAGCAGCCGCCGCCGGTGTCGGGCTCCGGGTGGCGTCCTCTTCTTCCCTGAGCT CTCCGTGGCTCCTTCTTCTCCTCATCGTCGTAAAGGAGGTCATCCCATCCTCCAAAACCG GAGCCGGATTCGGTCGATTGCGTGGGTG



consensusID : consensus_11033#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [TTTTTTGATTTGCATGAAGTTGTGAGTTGTGACTGTCAGGTGAACATGACCAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTGACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAA]

[+] EMBL CF294732             [TTTTTTGATTTGCATGAAGTTGTGAGTTGTGACTGTCAGGTGAACATGACCAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTGACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGCTGCGTCGTGGACCTCTCCTCGCCCGCAA]


>consensus_11033#2 TTTTTTGATTTGCATGAAGTTGTGAGTTGTGACTGTCAGGTGAACATGACCAAGACAAAA AAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTGACGAACTGAC GATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCTTCTCAAATTT AGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGGCGCGTCAGCA GTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATGCCGCCATTGC TGCGTCGTGGACCTCTCCTCGCCCGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11033#0      ACTTGCCGCTTTCATGCACTGCCAGCACTCCTAATTTCGGATGCTTGTTGTCCGTCACGA 60
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TTAATTCTGCTATGCTTCTCGTCCTTCTTCCGTATCCGGTCGGTCTCTCTCTGCTCATGG 120
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      GAGCACAACAGCGAACGGAAGGCCATGGTGTCTCCGGTCACCTCGTAAGTCCCTCGTTGC 180
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      GTCGCAGACTAATCAGCGAGAATTATCTCCTAAAATTCCGCCGAGTTGCTGGCTTGTTGC 240
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TGCCAGGAAATTCTCCAAATCACTGGACCTGATTAGCGTAGGAGAAATCAGCTTGACGAG 300
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CTGTAGTGCACCACATATGTACCTGTAGTGCACTATTGCTGTACTGACAAAGAGTAGGCA 360
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      GAACAACAGCGCCAGCACGGCGAAGGAATAGAAGGAGAAGGAGAAGAAGGTGAACATGAC 420
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ----------TTTTTTGATTTGCATGAAGTTGTGAGTTGTGACTGTCAGGTGAACATGAC 50
                                                                                   

consensus_11033#0      CAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTG 480
consensus_11033#1      --------------------------------------------------------TTTT 4
consensus_11033#2      CAAGACAAAAAAGAGGCAAAGTGCACCTGACCGGGAGAAGGAAATTGTGATAAGAGTCTG 110
                                                                               * * 

consensus_11033#0      ACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCT 540
consensus_11033#1      TTTTTTGGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTT-CTTCTTCT 63
consensus_11033#2      ACGAACTGACGATGAATCAATCCATTCTGAATGCTGAAATCTCTCAGTTTTTCTTCTTCT 170
                              ******************************************** ********

consensus_11033#0      TCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGG 600
consensus_11033#1      TCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGG 123
consensus_11033#2      TCTCAAATTTAGAGTATCCTGAACCATGAGCCGAGGAAGGGGAAGAGTGCCACGAGAAGG 230
                       ************************************************************

consensus_11033#0      CGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATG 660
consensus_11033#1      CGCGTCAGCAGGGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATG 183
consensus_11033#2      CGCGTCAGCAGTGGCGCCTGGTTATACCTCATGCTGCTGCTGCTTCTTCCTCGCGACATG 290
                       *********** ************************************************

consensus_11033#0      CCGCCATTGCTG-CGTCG-TGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGG 718
consensus_11033#1      CCGCCATTGCTGGCGTCGGNGGACCTCTCCTCGCCCGCAATCCCAGTCCCAGATCGGAGG 243
consensus_11033#2      CCGCCATTGCTG-CGTCG-TGGACCTCTCCTCGCCCGCAA-------------------- 328
                       ************ *****  ********************                    

consensus_11033#0      CGGCAGCAGCCGCCGCCG-TGTCGGGCTCCGG-TGGCGTCCTCTTCTTCCCTGAGCTCTC 776
consensus_11033#1      CGGCAGCAGCCGCCGCCGGTGTCGGGCTCCGGGTGGCGTCCTCTTCTTCCCTGAGCTCTC 303
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CT--GCTCCTTCTTCTCCTCATCGTCGTAGAGGAGGTCATCCCATCCTCCAAAACCGGAG 834
consensus_11033#1      CGTGGCTCCTTCTTCTCCTCATCGTCGTAAAGGAGGTCATCCCATCCTCCAAAACCGGAG 363
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CCGGATTCGGTCGATTGCTGGTGGCTCCTGCTCCGCCATTGCCATGCCCCGGCATCATAG 894
consensus_11033#1      CCGGATTCGGTCGATTGC--GTGGGTG--------------------------------- 388
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TAGTCGCCGTCGTCGTCGTCTTCCTCTCGGCGTTGGAAGGCGGGATCGTCATCGTAGTCG 954
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TATCCGTACGACTCCTCCTCCTCCTGCTGCCGACGACTCCTGGTGGTGAAGAAGGAGACG 1014
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      ACCCAGGAGATGGCGGACTGGGCGAGCGGCAGCGCCATGGCCATGAGGAAAGCTCTGGGC 1074
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CCCGTGGCCACCAGCATGGACGCCAGCAGCAGCGGCAGCACGTAGCCGTACGCACGGAAG 1134
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      AGCTTGGAAAACCATGGCTCGCCGAACAGCTCCTGCGCTGACCCGCCTGGCGCGCCGCCG 1194
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TCGTCGTATCCGTATCCCTCCTCGTCGTCCTCTTCCTCCATGTCCTCGTCGGACCACCAC 1254
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CGCCTCCTCCCGTTCGCCGCCGCCGTCGTCCTCCAGGGTCCCTCCGAGCGATGGCAGCGG 1314
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CAGCGAGGCAGCTGCAGGGGGGGCACTGGGCGGTTGGATTGGGAGGCCGTTGCTGGTGCT 1374
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      GGAGCTGGTCCTACTCCGACGAGCCGTCCCCGTCCAAGAGGAGGACGAGGCGGCGGCGGC 1434
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      GGCGGCAGCGGCATAGCCATTGCCTAGCTTACGACAAGGCAAGGCAAGACGGACAAGGGA 1494
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TAACGATCGAGTGGCTGTGTGGACTGGAGTGGACAAGACAAGCAGGAGGTTAGTAAGGTC 1554
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TTTTCGCTGCTCTAATTCATCACAACGAAATATAGCAAACCTTGCATCAGCTTGACATTT 1614
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TTCCCTTCCAATAGTTTGAACCAAGAATGCAGCAGCTGTAACAGGGTCTACAAACAAACA 1674
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CAACTGGTGTGTCTAGTTCACGTTAAAATTGAAAGTTTGATTGAAATTGGAACGATGTGA 1734
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      CGAAAATGTTAGAAGTTTATGTATGTAGGAAAGTTTTGATGTGATGGAAAAGTTGGAAGT 1794
consensus_11033#1      ------------------------------------------------------------
consensus_11033#2      ------------------------------------------------------------
                                                                                   

consensus_11033#0      TTGAAGAAAAC 1805
consensus_11033#1      -----------
consensus_11033#2      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)