These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1311 fasta sequence [CGCTTGCGGTAAGAACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCTTGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGTGCTAAATGGCAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGAGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA-GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT-GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC-AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA-TGTACTC-CCTGCGTGCTG-CCAAAATATGCAAGT-AAAAAAAAACA-AATGCCATAATCGTCCAGGC-AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGTATTACTAATCC-ATGGTATCAACTGAGCTTTGATGATGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAAGCAGTGATGAATTGTCTTAAAAATTCTGGCCTTTGTACCGACACTTCTCTAAAAGAATTAAAGACCAG] [+] EMBL AK068127 [CGCTTGCGGTAAGAACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCTTGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGTGCTAAATGGCAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGAGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACACGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGT AAAAAAAAACA AATGCCATAATCGTCCAGGC AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGTATTACTAATCC ATGGTATCAACTGAGCTTTGATGATGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAAGCAGTGATGAATTGTCTTACAACTTCTGGCCTTTGTACCGACACTTCTCTAAAAGAATTAAAGACCAG] [+] EMBL CF281363 [ AGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTGGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGGTGTGCTTANGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTAT ] [-] EMBL CB666831 [ AACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGT AAAAAAAAACA AATGCCATAATCGTCCAGGC AATACGGCAATATCTGGTCATCGTTTGGATGGGTTGGGTGGGTATTNCTAA ] [+] EMBL CB666830 [ AGAGACTCGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGT AAAAAAAAACA AATGCCATAATCGTCCAGGC AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGT ] [+] EMBL BI796638 [ AATACT CTACAACGGTTATGTTACCAGA GCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCA GCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGT CAGTGAAA TGGGTTCCACGCCCACCGGGAGACAAACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCATTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGTAAAAAAAAAACACAATGCCATGATCGTCCAGGCAAATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGCATTACTAATCC ATGGTATCAACTGAGCTTTGATGATGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAA CAGTGATGAATTGTCTTAAAAA ] [+] EMBL AU102096 [ AAACTCTNCANTGTACTCACCTGCGTGCTGCCCAAAATATGCAAGTAAAAAAAAAACA AATGCNATAATCGTCCAGGC AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGTATTANTAATCCTATGGTATCAANTGAGCTTTGATGNTGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGNAGAAAAGNAGTGATGAATTGTNTTAAAAA ] consensusID : consensus_11035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [GCTTTGCTGTATTCTAATCTAGCCTAGGAATTACTACCACTACTGCACATTATTAATCTACTAGCTCAGGACGACTNTATCAGAAAGAAATTTTGTTTGCTTTGCCATTCCTCTAATTCTGGTAGACATAAAGTGCTGGATTTCTTCAGTTATGTTACCAGAGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCACGGAGGGATGGGTGCGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACACGGACGGCGGCCCATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAATTTGAGGTTCGAGATTGTTGACCTGCNTTCCGCTCCCTGAACATGTAATTCAGCCTCAACTCTCCATGTACTCCCTGCGTGCTCCAAATANGCAAGTAAAAAAAAAACAATCCATAATCGTCAGCATACGCATATCTGCTCATCGTTTGGATGGTTGGTGGGTATTACTAAAAA] [+] EMBL BI806665 [GCTTTGCTGTATTCTAATCTAGCCTAGGAATTACTACCACTACTGCACATTATTAATCTACTAGCTCAGGACGACTNTATCAGAAAGAAATTTTGTTTGCTTTGCCATTCCTCTAATTCTGGTAGACATAAAGTGCTGGATTTCTTCAGTTATGTTACCAGAGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCACGGAGGGATGGGTGCGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACACGGACGGCGGCCCATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAATTTGAGGTTCGAGATTGTTGACCTGCNTTCCGCTCCCTGAACATGTAATTCAGCCTCAACTCTCCATGTACTCCCTGCGTGCTCCAAATANGCAAGTAAAAAAAAAACAATCCATAATCGTCAGCATACGCATATCTGCTCATCGTTTGGATGGTTGGTGGGTATTACTAAAAA] consensusID : consensus_11035#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [TCTCTCCCGCGTCCCTTCTCCAATCCTTNGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGGAGCTTCGGCAATGTTTCTTTT] [+] EMBL OSC102521 [TCTCTCCCGCGTCCCTTCTCCAATCCTTNGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGGAGCTTCGGCAATGTTTCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11035#0 ----------------------------------------------CGCTTGCGGTAAGA 14 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 GCTTTGCTGTATTCTAATCTAGCCTAGGAATTACTACCACTACTGCACATTATTAATCTA 60 consensus_11035#0 ACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCT 74 consensus_11035#2 ---------------------------------TCTCTCCCGCGTCCCTTCTCCAATCCT 27 consensus_11035#1 CTAGCTCAGGACGACTNTATCAGAAAGAAATTTTGTTTGCTTTGCCATTCCTCTAATTCT 120 * * * * * * * *** *** ** consensus_11035#0 TGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAA 134 consensus_11035#2 TNGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAA 87 consensus_11035#1 -GGTAGACATAAAGTGC--TGGATTTCTTCAGTTATGTTACCAGAGCCGTTGCGATTGTG 177 * ** * * ** ** * *** * * ** ** * * * * consensus_11035#0 GTCTGGTGCCAA-GACCTAGCCATGGGTGGCAGGAGTGCTAAATGGCAGAGTTGA--AAT 191 consensus_11035#2 GTCTGGTGCCAA-GACCTAGCCATGGGTGGCAGGAG-------------AGTTGA--AAT 131 consensus_11035#1 AT-TGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCACGGAG 236 * ** * *** ** * * * * * * * * * consensus_11035#0 CAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAAT 251 consensus_11035#2 CAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAAT 191 consensus_11035#1 GGATGGGTGCGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACACGGA 296 *** * ** *** ** * * ** * ** * consensus_11035#0 CGATA-CCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCA--GCAAGAGA 308 consensus_11035#2 CGATA-CCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCA--GCAAGAGA 248 consensus_11035#1 CGGCGGCCCATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAATTTGAGGTTCGAGA 356 ** ** ** * *** * **** * * ** * * * **** consensus_11035#0 TCGCAATACCGGTTCCTACTCTGTGAA-GCACCATTA---CCCATCTCCTATTGT--TTC 362 consensus_11035#2 TCGCAATACCGGTTCCTACTCTGTGAA-GCACCATTA---CCCATCTCCTATTGT--TTC 302 consensus_11035#1 TTGTTGACCTGCNTTCCGCTCCCTGAACATGTAATTCAGCCTCAACTCTCCATGTACTCC 416 * * * * * * *** **** *** * ** *** *** * * consensus_11035#0 TTGGATAGAAGACCTTTCG-AGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATG 421 consensus_11035#2 TTGGATAGAAGACCTTTCGGAGCTTCGGCAATGTTTCTTTT------------------- 343 consensus_11035#1 CTGCGTGCTCCAAATANGCAAGTAAAAAAAAAACAATCCATAATCGTCAGCATACGCATA 476 ** * * * ** ** * consensus_11035#0 CTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACA 481 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 TCTGCTCATCGTTTGGATGGTTGGTGGGTATTACTAAAAA-------------------- 516 consensus_11035#0 TGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCA 541 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 ACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGA 601 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 CTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGG 661 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 AGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACAC 721 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 ACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCAGG 781 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 TTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTG 841 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 GAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAGGGAGTGCAGTGAAAGTG 901 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 GGTTCCACGCCCACCGGGAGACAACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGG 961 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 TTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAA 1021 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 TGTAATTCAGCCTCAAACTCTCCATGTACTCCCTGCGTGCTGCCAAAATATGCAAGTAAA 1081 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 AAAAAACAAATGCCATAATCGTCCAGGCAATACGGCAATATCTGCTCATCGTTTGGATGG 1141 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 GTTGGGTGGGTATTACTAATCCATGGTATCAACTGAGCTTTGATGATGGTACAGTAATAT 1201 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 GGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAAGCAGTGATGAATTGTCTT 1261 consensus_11035#2 ------------------------------------------------------------ consensus_11035#1 ------------------------------------------------------------ consensus_11035#0 AAAAATTCTGGCCTTTGTACCGACACTTCTCTAAAAGAATTAAAGACCAG 1311 consensus_11035#2 -------------------------------------------------- consensus_11035#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||