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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1311 fasta sequence
[CGCTTGCGGTAAGAACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCTTGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGTGCTAAATGGCAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGAGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA-GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT-GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC-AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA-TGTACTC-CCTGCGTGCTG-CCAAAATATGCAAGT-AAAAAAAAACA-AATGCCATAATCGTCCAGGC-AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGTATTACTAATCC-ATGGTATCAACTGAGCTTTGATGATGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAAGCAGTGATGAATTGTCTTAAAAATTCTGGCCTTTGTACCGACACTTCTCTAAAAGAATTAAAGACCAG]
[+] EMBL AK068127 [CGCTTGCGGTAAGAACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCTTGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGTGCTAAATGGCAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGAGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACACGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGT AAAAAAAAACA AATGCCATAATCGTCCAGGC AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGTATTACTAATCC ATGGTATCAACTGAGCTTTGATGATGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAAGCAGTGATGAATTGTCTTACAACTTCTGGCCTTTGTACCGACACTTCTCTAAAAGAATTAAAGACCAG]
[+] EMBL CF281363 [ AGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTGGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGGTGTGCTTANGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTAT ]
[-] EMBL CB666831 [ AACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGT AAAAAAAAACA AATGCCATAATCGTCCAGGC AATACGGCAATATCTGGTCATCGTTTGGATGGGTTGGGTGGGTATTNCTAA ]
[+] EMBL CB666830 [ AGAGACTCGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCA GGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGAC AACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGT AAAAAAAAACA AATGCCATAATCGTCCAGGC AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGT ]
[+] EMBL BI796638 [ AATACT CTACAACGGTTATGTTACCAGA GCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCA GCTGACAGACCCAGGAGGGAT GGGTGTGCTTAGGGAGT CAGTGAAA TGGGTTCCACGCCCACCGGGAGACAAACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCATTCCGCTCCCTGAACAATGTAATTCAGCCTCAAACTCTCCA TGTACTC CCTGCGTGCTG CCAAAATATGCAAGTAAAAAAAAAACACAATGCCATGATCGTCCAGGCAAATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGCATTACTAATCC ATGGTATCAACTGAGCTTTGATGATGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAA CAGTGATGAATTGTCTTAAAAA ]
[+] EMBL AU102096 [ AAACTCTNCANTGTACTCACCTGCGTGCTGCCCAAAATATGCAAGTAAAAAAAAAACA AATGCNATAATCGTCCAGGC AATACGGCAATATCTGCTCATCGTTTGGATGGGTTGGGTGGGTATTANTAATCCTATGGTATCAANTGAGCTTTGATGNTGGTACAGTAATATGGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGNAGAAAAGNAGTGATGAATTGTNTTAAAAA ]
consensusID : consensus_11035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence
[GCTTTGCTGTATTCTAATCTAGCCTAGGAATTACTACCACTACTGCACATTATTAATCTACTAGCTCAGGACGACTNTATCAGAAAGAAATTTTGTTTGCTTTGCCATTCCTCTAATTCTGGTAGACATAAAGTGCTGGATTTCTTCAGTTATGTTACCAGAGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCACGGAGGGATGGGTGCGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACACGGACGGCGGCCCATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAATTTGAGGTTCGAGATTGTTGACCTGCNTTCCGCTCCCTGAACATGTAATTCAGCCTCAACTCTCCATGTACTCCCTGCGTGCTCCAAATANGCAAGTAAAAAAAAAACAATCCATAATCGTCAGCATACGCATATCTGCTCATCGTTTGGATGGTTGGTGGGTATTACTAAAAA]
[+] EMBL BI806665 [GCTTTGCTGTATTCTAATCTAGCCTAGGAATTACTACCACTACTGCACATTATTAATCTACTAGCTCAGGACGACTNTATCAGAAAGAAATTTTGTTTGCTTTGCCATTCCTCTAATTCTGGTAGACATAAAGTGCTGGATTTCTTCAGTTATGTTACCAGAGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCACGGAGGGATGGGTGCGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACACGGACGGCGGCCCATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAATTTGAGGTTCGAGATTGTTGACCTGCNTTCCGCTCCCTGAACATGTAATTCAGCCTCAACTCTCCATGTACTCCCTGCGTGCTCCAAATANGCAAGTAAAAAAAAAACAATCCATAATCGTCAGCATACGCATATCTGCTCATCGTTTGGATGGTTGGTGGGTATTACTAAAAA]
consensusID : consensus_11035#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[TCTCTCCCGCGTCCCTTCTCCAATCCTTNGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGGAGCTTCGGCAATGTTTCTTTT]
[+] EMBL OSC102521 [TCTCTCCCGCGTCCCTTCTCCAATCCTTNGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGAGTTGAAATCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGGAGCTTCGGCAATGTTTCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11035#0 ----------------------------------------------CGCTTGCGGTAAGA 14
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 GCTTTGCTGTATTCTAATCTAGCCTAGGAATTACTACCACTACTGCACATTATTAATCTA 60
consensus_11035#0 ACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCT 74
consensus_11035#2 ---------------------------------TCTCTCCCGCGTCCCTTCTCCAATCCT 27
consensus_11035#1 CTAGCTCAGGACGACTNTATCAGAAAGAAATTTTGTTTGCTTTGCCATTCCTCTAATTCT 120
* * * * * * * *** *** **
consensus_11035#0 TGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAA 134
consensus_11035#2 TNGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTCGAA 87
consensus_11035#1 -GGTAGACATAAAGTGC--TGGATTTCTTCAGTTATGTTACCAGAGCCGTTGCGATTGTG 177
* ** * * ** ** * *** * * ** ** * * * *
consensus_11035#0 GTCTGGTGCCAA-GACCTAGCCATGGGTGGCAGGAGTGCTAAATGGCAGAGTTGA--AAT 191
consensus_11035#2 GTCTGGTGCCAA-GACCTAGCCATGGGTGGCAGGAG-------------AGTTGA--AAT 131
consensus_11035#1 AT-TGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCACGGAG 236
* ** * *** ** * * * * * * * * *
consensus_11035#0 CAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAAT 251
consensus_11035#2 CAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAAT 191
consensus_11035#1 GGATGGGTGCGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACACGGA 296
*** * ** *** ** * * ** * ** *
consensus_11035#0 CGATA-CCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCA--GCAAGAGA 308
consensus_11035#2 CGATA-CCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCA--GCAAGAGA 248
consensus_11035#1 CGGCGGCCCATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAATTTGAGGTTCGAGA 356
** ** ** * *** * **** * * ** * * * ****
consensus_11035#0 TCGCAATACCGGTTCCTACTCTGTGAA-GCACCATTA---CCCATCTCCTATTGT--TTC 362
consensus_11035#2 TCGCAATACCGGTTCCTACTCTGTGAA-GCACCATTA---CCCATCTCCTATTGT--TTC 302
consensus_11035#1 TTGTTGACCTGCNTTCCGCTCCCTGAACATGTAATTCAGCCTCAACTCTCCATGTACTCC 416
* * * * * * *** **** *** * ** *** *** * *
consensus_11035#0 TTGGATAGAAGACCTTTCG-AGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATG 421
consensus_11035#2 TTGGATAGAAGACCTTTCGGAGCTTCGGCAATGTTTCTTTT------------------- 343
consensus_11035#1 CTGCGTGCTCCAAATANGCAAGTAAAAAAAAAACAATCCATAATCGTCAGCATACGCATA 476
** * * * ** ** *
consensus_11035#0 CTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACA 481
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 TCTGCTCATCGTTTGGATGGTTGGTGGGTATTACTAAAAA-------------------- 516
consensus_11035#0 TGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCA 541
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 ACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGA 601
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 CTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGG 661
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 AGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACAC 721
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 ACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCAGG 781
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 TTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTG 841
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 GAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAGGGAGTGCAGTGAAAGTG 901
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 GGTTCCACGCCCACCGGGAGACAACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGG 961
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 TTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGAACAA 1021
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 TGTAATTCAGCCTCAAACTCTCCATGTACTCCCTGCGTGCTGCCAAAATATGCAAGTAAA 1081
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 AAAAAACAAATGCCATAATCGTCCAGGCAATACGGCAATATCTGCTCATCGTTTGGATGG 1141
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 GTTGGGTGGGTATTACTAATCCATGGTATCAACTGAGCTTTGATGATGGTACAGTAATAT 1201
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 GGTATTTGTAAGAATGAAGTGTAACTGGGAGAGAGAAGAAAAGCAGTGATGAATTGTCTT 1261
consensus_11035#2 ------------------------------------------------------------
consensus_11035#1 ------------------------------------------------------------
consensus_11035#0 AAAAATTCTGGCCTTTGTACCGACACTTCTCTAAAAGAATTAAAGACCAG 1311
consensus_11035#2 --------------------------------------------------
consensus_11035#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||