Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11038 cluster # 11038       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11038#0 length = 1824 sequences # 3  
consensus_11038#1 length = 844 sequences # 2  
consensus_11038#2 length = 658 sequences # 3  

consensusID : consensus_11038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1824
fasta sequence
                              [CCATTCCGTTGCGAAATTTTTGCGAGCTCGCGACGCGAACCCCCTACGCCGCAGCCGCAGGCTTCCTCTTCATCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGTGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGGCGCTGGCGAGGCGTGGCGGTGGGGGGCTGGCGCGCGCCCTGGCGCGGGGGAGGGGGATGTGCTCGGCCACGGCGGCGGAGCGCGCCGCCGGGGCGGCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTACCATCCAATTCCGGTGGTGTTCTCCAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGAGCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAATTCCCAATCTTTGCAGAATACCTGACAAGCATGTTTGGGTATGAAATGATGTTGCCGATGAATACTGGAGCTGAAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGGTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGTGGTTTTGGCCCATTGGTTCCTGGCCATCTTAAAGTTGATTTTGGAGACACTGATGGGTTGGAGAAAATCTTTAAAGATCATGGCGAGAGGATATGTGGTTTTTTGTTTGAACCAATCCAAGGAGAAGCTGGGGTAATAATCCCACCAGATGGCTATTTGAAAGCTGTCAGAGATTTGTGTTCAAGGCACAACATTCTGATGATTGCAGATGAGATCCAAACAGGCATAGCTAGAACTGGCAAAATGCTGGCATGCGATTGGGAAAACATACGACCTGATGTGGTGATTCTAGGCAAGGCCCTTGGTGCTGGAGTAGTTCCTGTCAGTGCGGTTCTTGCAGATAAGGATATTATGCTGTGTATCAAACCAGGAGAACATGGAAGTACATTTGGTGGGAACCCATTGGCAAGTGCTGTGGCAGTTGCATCACTGAAAGTAGTTACAGATGAAGGTCTCGTTGAAAGGGCTGCAAAGTTAGGACAAGAGTTCAGAGATCAGCTACAGAAGGTTCAACAGAGATTCCCGCAAATCATAAGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATCTAAGCAACGAAGCTTTATCCCCTGCTTCTGCTTACGACATCTGCATCAAGCTGAAGGAGAGAGGCGTTCTGGCAAAGCCCACACATGACACCATAATCAGATTAGCGCCTCCGCTGTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACAGCTGCAGAAGCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGATAGACGAGACAATGAAACGTTTCCAGAGGCACCCGTTTCGCCCAAATAAAATAGCAGAACACACCTCGCGAATTCATAGCTCATTGTAGTAGTAGAGTAGGATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGGATTTGTCGCCTAATCGAGCTGGTTGCAAACAAATGGGGTAGCATTATTCTAGTCTATCATATCATGCAGAAGAATCTT]

[+] EMBL AK108010             [CCATTCCGTTGCGAAATTTTTGCGAGCTCGCGACGCGAACCCCCTACGCCGCAGCCGCAGGCTTCCTCTTCATCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGTGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGGCGCTGGCGAGGCGTGGCGGTGGGGGGCTGGCGCGCGCCCTGGCGCGGGGGAGGGGGATGTGCTCGGCCACGGCGGCGGAGCGCGCCGCCGGGGCGGCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTACCATCCAATTCCGGTGGTGTTCTCCAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGAGCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAATTCCCAATCTTTGCAGAATACCTGACAAGCATGTTTGGGTATGAAATGATGTTGCCGATGAATACTGGAGCTGAAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU069087             [               ATTTTTNCAAGCTCGCNACG GAACCCCCTACGCCGCAGCCGCA GTTNNCTCTTCATCTCCTCCTCCTCCANACCTCCACGCNAGCNTGCCCCGGGGTGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTNACGATGGCGGCGGCGCTGGCNAGGCGTGGCGGTGGGGGGCTGGCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK099445             [                             GCGACGCGAACCCCCTACGCCGCAGCCGCAGGCTTCCTCTTCATCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGTGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGGCGCTGGCGAGGCGTGGCGGTGGGGGGCTGGCGCGCGCCCTGGCGCGGGGGAGGGGGATGTGCTCGGCCACGGCGGCGGAGCGCGCCGCCGGGGCGGCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTACCATCCAATTCCGGTGGTGTTCTCCAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGAGCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAATTCCCAATCTTTGCAGAATACCTGACAAGCATGTTTGGGTATGAAATGATGTTGCCGATGAATACTGGAGCTGAAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGGTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGTGGTTTTGGCCCATTGGTTCCTGGCCATCTTAAAGTTGATTTTGGAGACACTGATGGGTTGGAGAAAATCTTTAAAGATCATGGCGAGAGGATATGTGGTTTTTTGTTTGAACCAATCCAAGGAGAAGCTGGGGTAATAATCCCACCAGATGGCTATTTGAAAGCTGTCAGAGATTTGTGTTCAAGGCACAACATTCTGATGATTGCAGATGAGATCCAAACAGGCATAGCTAGAACTGGCAAAATGCTGGCATGCGATTGGGAAAACATACGACCTGATGTGGTGATTCTAGGCAAGGCCCTTGGTGCTGGAGTAGTTCCTGTCAGTGCGGTTCTTGCAGATAAGGATATTATGCTGTGTATCAAACCAGGAGAACATGGAAGTACATTTGGTGGGAACCCATTGGCAAGTGCTGTGGCAGTTGCATCACTGAAAGTAGTTACAGATGAAGGTCTCGTTGAAAGGGCTGCAAAGTTAGGACAAGAGTTCAGAGATCAGCTACAGAAGGTTCAACAGAGATTCCCGCAAATCATAAGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATCTAAGCAACGAAGCTTTATCCCCTGCTTCTGCTTACGACATCTGCATCAAGCTGAAGGAGAGAGGCGTTCTGGCAAAGCCCACACATGACACCATAATCAGATTAGCGCCTCCGCTGTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACAGCTGCAGAAGCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGATAGACGAGACAATGAAACGTTTCCAGAGGCACCCGTTTCGCCCAAATAAAATAGCAGAACACACCTCGCGAATTCATAGCTCATTGTAGTAGTAGAGTAGGATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGGATTTGTCGCCTAATCGAGCTGGTTGCAAACAAATGGGGTAGCATTATTCTAGTCTATCATATCATGCAGAAGAATCTT]


>consensus_11038#0 CCATTCCGTTGCGAAATTTTTGCGAGCTCGCGACGCGAACCCCCTACGCCGCAGCCGCAG GCTTCCTCTTCATCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGTGGAAGC GGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGG CGCTGGCGAGGCGTGGCGGTGGGGGGCTGGCGCGCGCCCTGGCGCGGGGGAGGGGGATGT GCTCGGCCACGGCGGCGGAGCGCGCCGCCGGGGCGGCGCTGACGTCCGAGGAGCTCATGC GGATGGAGCGCGAGCGCAGCGCGCACAACTACCATCCAATTCCGGTGGTGTTCTCCAAGG GAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTT ATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGAGCAGG CAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAATTCCCAATCTTTGCAG AATACCTGACAAGCATGTTTGGGTATGAAATGATGTTGCCGATGAATACTGGAGCTGAAG GAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGGTTATGAGAAGAAAAAGATACCAA AAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGTTTTCATGGTCGGACATTAGGTGTCA TCTCTATGAGTTGTGATAATGATGCAACTCGTGGTTTTGGCCCATTGGTTCCTGGCCATC TTAAAGTTGATTTTGGAGACACTGATGGGTTGGAGAAAATCTTTAAAGATCATGGCGAGA GGATATGTGGTTTTTTGTTTGAACCAATCCAAGGAGAAGCTGGGGTAATAATCCCACCAG ATGGCTATTTGAAAGCTGTCAGAGATTTGTGTTCAAGGCACAACATTCTGATGATTGCAG ATGAGATCCAAACAGGCATAGCTAGAACTGGCAAAATGCTGGCATGCGATTGGGAAAACA TACGACCTGATGTGGTGATTCTAGGCAAGGCCCTTGGTGCTGGAGTAGTTCCTGTCAGTG CGGTTCTTGCAGATAAGGATATTATGCTGTGTATCAAACCAGGAGAACATGGAAGTACAT TTGGTGGGAACCCATTGGCAAGTGCTGTGGCAGTTGCATCACTGAAAGTAGTTACAGATG AAGGTCTCGTTGAAAGGGCTGCAAAGTTAGGACAAGAGTTCAGAGATCAGCTACAGAAGG TTCAACAGAGATTCCCGCAAATCATAAGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAG TGGATCTAAGCAACGAAGCTTTATCCCCTGCTTCTGCTTACGACATCTGCATCAAGCTGA AGGAGAGAGGCGTTCTGGCAAAGCCCACACATGACACCATAATCAGATTAGCGCCTCCGC TGTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGC ATGACCTGCCACAGCTGCAGAAGCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAAT CCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGATAGACGAGACAATGAAACGTT TCCAGAGGCACCCGTTTCGCCCAAATAAAATAGCAGAACACACCTCGCGAATTCATAGCT CATTGTAGTAGTAGAGTAGGATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGT CCAGGGATTTGTCGCCTAATCGAGCTGGTTGCAAACAAATGGGGTAGCATTATTCTAGTC TATCATATCATGCAGAAGAATCTT



consensusID : consensus_11038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 844
fasta sequence
                              [TGCGAGCTCTCGACGCGAACCCCTACGCCGCAGCCGCAGGCTTCCTCCTCATCTCCTCCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGGTGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGGCGCTGGTGAGGCGGAGCGGCGCGGGGCTGGCGCGGGGGAGGGGGATGTGCTCGGCCACGGCGGCAGAGCGCGCGGCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTATCATCCAATTCCGGTGGTGTTCTCCAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGATCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAATTCCCAATCTTTGCGGAATACCTGACTAGCATGTTTGGATATGAAATGATGTTGCCGATGAATACTGGAGCTGAAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGGTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGTGGTTTTGGCCCATTGGTTCCTGGCCATCTTANAGTTGATTTTGGAGACATTGATGGGTTGGAGAAAATCTTTAAAGAGCATGGCGAGAGGATATGTGGTTTTTTGTTTGAACCAATCCCAGGAGAAG]

[+] EMBL CB620718             [TGCGAGCTCTCGACGCGAACCCCTACGCCGCAGCCGCAGGCTTCCTCCTCATCTCCTCCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGGTGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGGCGCTGGTGAGGCGGAGCGGCGCGGGGCTGGCGCGGGGGAGGGGGATGTGCTCGGCCACGGCGGCAGAGCGCGCGGCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTATCATCCAATTCCGGTGGTGTTCTCCAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGATCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAATTCCCAATCTTTGCGGAATACCTGACTAGCATGTTTGGATATGAAATGATGTTGCCGATGAATACTGGAGCTGAAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGGTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGTGGTTTTGGCCCATTGGTTCCTGGCCATCTTANAGTTGATTTTGGAGACATTGATGGGTTGGAGAAAATCTTTAAAGAGCATGGCGAGAGGATATGTGGTTTTTTGTTTGAACCAATCCCAGGAGAAG]
[+] EMBL CA762428             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGGGGTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGTGGTTTTGGCCCATTGGTTCCTGGCCATCTTAAAGTTGATTTTGGAGACATTGATGGGTTGGAGAAAATCTTTAAAGAGCAT                                              ]


>consensus_11038#1 TGCGAGCTCTCGACGCGAACCCCTACGCCGCAGCCGCAGGCTTCCTCCTCATCTCCTCCT CCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGGTGGAAGCGGAGGCGGCGGCGG CTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATGGCGGCGGCGCTGGTGAGGCGG AGCGGCGCGGGGCTGGCGCGGGGGAGGGGGATGTGCTCGGCCACGGCGGCAGAGCGCGCG GCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTATCAT CCAATTCCGGTGGTGTTCTCCAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAAC AAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATCAGGGCCATTGCCATCCAAAA GTCCTGAGAGCGTTGAAAGATCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTAC AATGACAAATTCCCAATCTTTGCGGAATACCTGACTAGCATGTTTGGATATGAAATGATG TTGCCGATGAATACTGGAGCTGAAGGAGTGGAAACAGCTATCAAATTGGTGAGGAAATGG GGTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTTGATTGTCTCTTGCTGTGGATGT TTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGTGGT TTTGGCCCATTGGTTCCTGGCCATCTTANAGTTGATTTTGGAGACATTGATGGGTTGGAG AAAATCTTTAAAGAGCATGGCGAGAGGATATGTGGTTTTTTGTTTGAACCAATCCCAGGA GAAG



consensusID : consensus_11038#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 658
fasta sequence
                              [TAGGACAAGAGTTCAGAGATCAGCTACAGAAGGTTCAACAGAGATTCCCGCAAATCATAAGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATC-TAAGCAACGAAGCTT-TGTCCCCTG-CTTCTGCTTACGACATCTGCA-TCAAGCTGAAGGAGAGAGGCG-TTCTGGCAA-AGCCCACATCA-TGACACCATAATCAGATTAGCGCCTCCGC-TGTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACACGCTGCACGAAGCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGATTCCTCCATCCGAGCAAATAGACGAGACGATGAAACGTTTCCAGAGGCACCCGTTTCG-CCCAAATAAAATAGCAGAACACACCTCGCGAATTCATGGCTCATTGTAGTAGTAGAGTAGTATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGGATTTGTCGCCTAATCGAGCTGGTTCCAAACAAATGGGGTAGCATTATTCTAGTCTAATCATATTATGCAAAAAAATCTTGAACTGGATGAAATCGGTCGATTTTATCTAAAAAAAAAA]

[+] EMBL BQ906360             [TAGGACAAGAGTTCAGAGATCAGCTACAGAAGGTTCAACAGAGATTCCCGCAAATCATAAGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATC TAAGCAACGAAGCTT TGTCCCCTG CTTCTGCTTACGACATCTGCA TCAAGCTGAAGGAGAGAGGCG TTCTGGCAA AGCCCACATCA TGACACCATAATCAGATTAGCGCCTCCGC TGTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACACGCTGCACGAAGCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGATTCCTCCATCCGAGCAAATAGACGAGACGATGAAACGTTTCCAGAGGCACCCGTTTCG CCCAAATAAAATAGCAGAACACACCTCGCGAAaaaa                                                                                                                                                                                             ]
[+] EMBL BM418725             [                                                                                               tATCTTAAGCAACGAAGCTTNTGTCCCCTGTCTTCTGCTTACGACATCTGCACTCAAGCTGAAGGAGAGAGGCGTTTCTGGCAAGAGCCCACA CAGTGACCCCATAATCAGATTAGCGCCTCCGCGTGTCAATCAGTCCTGAGGAGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACA GCTGCA GAACCAGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTGTACTGATGAGTGATTCCTCCATCCGAGCAAATAGACGAGACGATGAAACGTTTCCAGAGGCACCCGTTTCG CCCAAATAAAATAGCAGAACACACCTCGCGAATTCATGGCTCATTGTAGTAGTAGAGTAGTATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGGATTTGTCGCCTAATCGAGCTGGTTCCAAACAAATGGGGTAGCATTATTCTAGTCTAATCATATTATGCAAAAAAA                                           ]
[+] EMBL BM421056             [                                                                                                                                                                                                                                                                                                                                                                                                     ccgCCGAGCAAATAGACGAGACGATGAAACGTTTCCAGAGGCACCCGTTTCGCCCCAAATAAAATAGCAGAACACACCTCGCGAATTCATGGCTCATTGTAGTAGTAGAGTAGTATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGGATTTGTCGCCTAATCGAGCTGGTTGCAAACNAATGGGGTAGCATTATTCTAGTCTAATCATATTATGCAGAAGAATCTTGAACTGGATGAAATCGGTCGATTTTATCTAAAAAAAAAA]


>consensus_11038#2 TAGGACAAGAGTTCAGAGATCAGCTACAGAAGGTTCAACAGAGATTCCCGCAAATCATAA GGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATCTAAGCAACGAAGCTTTGTCCC CTGCTTCTGCTTACGACATCTGCATCAAGCTGAAGGAGAGAGGCGTTCTGGCAAAGCCCA CATCATGACACCATAATCAGATTAGCGCCTCCGCTGTCAATCAGTCCTGAGGAGCTTGCA GAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACACGCTGCACGAAGC AGATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACT TGTACTGATGAGTGATTCCTCCATCCGAGCAAATAGACGAGACGATGAAACGTTTCCAGA GGCACCCGTTTCGCCCAAATAAAATAGCAGAACACACCTCGCGAATTCATGGCTCATTGT AGTAGTAGAGTAGTATATATACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGG ATTTGTCGCCTAATCGAGCTGGTTCCAAACAAATGGGGTAGCATTATTCTAGTCTAATCA TATTATGCAAAAAAATCTTGAACTGGATGAAATCGGTCGATTTTATCTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11038#0      CCATTCCGTTGCGAAATTTTTGCGAGCTCGCGACGCGAACCCCCTACGCCGCAGCCGCAG 60
consensus_11038#1      --------------------TGCGAGCTCTCGACGCGAACCCC-TACGCCGCAGCCGCAG 39
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      GCTTCCTCTTCATCTCCTCCTCCTCC------AGACCTCCACGCGAGCGTGCCCCGGGG- 113
consensus_11038#1      GCTTCCTCCTCATCTCCTCCTCCTCCTCCTCCAGACCTCCACGCGAGCGTGCCCCGGGGG 99
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      TGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATG 173
consensus_11038#1      TGGAAGCGGAGGCGGCGGCGGCTCGAGCGCAATCTGGTGGCGTGGGGGCGCGTCACGATG 159
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      GCGGCGGCGCTGGCGAGGCGTGGCGGTGGGGGGCTGGCGCGCGCCCTGGCGCGGGGGAGG 233
consensus_11038#1      GCGGCGGCGCTGGTGAGGCGGAGCGGCGCGGGGCTGGCGCG------------GGGGAGG 207
consensus_11038#2      ---------------------------------------------------------TAG 3
                                                                                  *

consensus_11038#0      GGGATGTGCTCGGCCA-CGGCGGCGGAGCGCGCCGCCGGGGCGGCGCTGACGTCCGAGGA 292
consensus_11038#1      GGGATGTGCTCGGCCA-CGGCGGCAGAGCGCGC---------GGCGCTGACGTCCGAGGA 257
consensus_11038#2      GACAAGAGTTCAGAGATCAGCTACAGAAGGTTC-----------AACAGAGATTCCCGCA 52
                       *  * * * ** *  * * **  * **  *  *             * **  * *  * *

consensus_11038#0      GCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAAC-TACC--ATCCAATTCCGGTGGT 349
consensus_11038#1      GCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAAC-TATC--ATCCAATTCCGGTGGT 314
consensus_11038#2      AATCATAAGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATCTAAGCAACGAAGC 112
                         ****  **   *  ** * * *  *   **  **   *    *** **     *  * 

consensus_11038#0      GTTCTCCAAGGGAGAAGGTTC--ACATATATTGGATCCTGAAGGCAACAAATACATTGAT 407
consensus_11038#1      GTTCTCCAAGGGAGAAGGTTC--ACATATATTGGATCCTGAAGGCAACAAATACATTGAT 372
consensus_11038#2      TTTGTCCCCTGCTTCTGCTTACGACATCTGCATCAAGCTGAAGGAGAGAGGCGTTCTGGC 172
                        ** ***   *     * **   **** *     *  *******  * *       **  

consensus_11038#0      TT--CCTGTCTGCTTATTCTGCAGTCA-ATCAGGGCCATTGCCATCCAAAAGTCCTGAGA 464
consensus_11038#1      TT--CCTGTCTGCTTATTCTGCAGTCA-ATCAGGGCCATTGCCATCCAAAAGTCCTGAGA 429
consensus_11038#2      AAAGCCCACATCATGACACCATAATCAGATTAGCGCCTCCGCTGTCAATCAGTCCTGAGG 232
                           **    *  * *  *   * *** ** ** ***   **  ** *  ********* 

consensus_11038#0      GCGTTGAAAGAGCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAA 524
consensus_11038#1      GCGTTGAAAGATCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTACAATGACAAA 489
consensus_11038#2      AGCTTGCAGAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACACGCTG 292
                          *** *  * **   *    *     *  ** * *  **      ** * *       

consensus_11038#0      TTCCCAATCTTTGCAGAATACCTGACAAGCATGTTTGGGTATGAAATGATGTTGCCGATG 584
consensus_11038#1      TTCCCAATCTTTGCGGAATACCTGACTAGCATGTTTGGATATGAAATGATGTTGCCGATG 549
consensus_11038#2      CACGAAGCAGATCAAGAAGACAGAATCCGCGG---CAGAAAAACAATCCTGTGACAGATG 349
                         *  *     *   *** **   *   **       *  *   ***  ***  * ****

consensus_11038#0      -----AATACTGGAGCTGA--AGGAGTGGAAACAGCT-ATCAAATTGGTGAGGAAATGGG 636
consensus_11038#1      -----AATACTGGAGCTGA--AGGAGTGGAAACAGCT-ATCAAATTGGTGAGGAAATGGG 601
consensus_11038#2      CGGCAGAGACTTGTACTGATGAGTGATTCCTCCATCCGAGCAAATAGACGAGACGATGAA 409
                             * *** *  ****  **   *     ** *  * ***** *  ***   ***  

consensus_11038#0      --GTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTT-GATTGTCTCTTGCTG-TGGA 692
consensus_11038#1      --GTTATGAGAAGAAAAAGATACCAAAAAATGAGGCTTT-GATTGTCTCTTGCTG-TGGA 657
consensus_11038#2      ACGTTTCCAGAGGCACCCGTTTCGCCCAAATAAAATAGCAGAACACACCTCGCGAATTCA 469
                         ***   *** * *   * * *    **** *       **      ** **   *  *

consensus_11038#0      TGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGT 752
consensus_11038#1      TGTTTTCATGGTCGGACATTAGGTGTCATCTCTATGAGTTGTGATAATGATGCAACTCGT 717
consensus_11038#2      TGGCT-CATTGTAGTA-GTAGAGTAGTATATATACACCTCCTTGTTGCGATGT--CTGGG 525
                       **  * *** ** * *  *   **   ** * **    *  *  *   ****   ** * 

consensus_11038#0      GGTTTTGGCCCATTGGTTCCTGGCCATCTTAAAGTTGATTTTGGAGACACTGA-TGGGTT 811
consensus_11038#1      GGTTTTGGCCCATTGGTTCCTGGCCATCTTANAGTTGATTTTGGAGACATTGA-TGGGTT 776
consensus_11038#2      ACATATGGTCCAGGGATTTGTCGCC-TAATCGAGCTGGTTCCAAACAAATGGGGTAGCAT 584
                          * *** ***  * **  * *** *  *  ** ** **    * * *  *  * *  *

consensus_11038#0      GGAGAAAATCTTTAAAGATCATGGCGAGAGGATATG---TGGTTTT--TTGTTTGAACCA 866
consensus_11038#1      GGAGAAAATCTTTAAAGAGCATGGCGAGAGGATATG---TGGTTTT--TTGTTTGAACCA 831
consensus_11038#2      TATTCTAGTCTAATCATATTATGCAAAAAAATCTTGAACTGGATGAAATCGGTCGATTTT 644
                             * ***    * *  ***   * *     **   *** *    * * * **    

consensus_11038#0      ATCCAAGGAGAAGCTGGGGTAATAATCCCACCAGATGGCTATTTGAAAGCTGTCAGAGAT 926
consensus_11038#1      ATCCCAGGAGAAG----------------------------------------------- 844
consensus_11038#2      ATCTAAAAAAAAAA---------------------------------------------- 658
                       ***  *  * **                                                

consensus_11038#0      TTGTGTTCAAGGCACAACATTCTGATGATTGCAGATGAGATCCAAACAGGCATAGCTAGA 986
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      ACTGGCAAAATGCTGGCATGCGATTGGGAAAACATACGACCTGATGTGGTGATTCTAGGC 1046
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      AAGGCCCTTGGTGCTGGAGTAGTTCCTGTCAGTGCGGTTCTTGCAGATAAGGATATTATG 1106
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      CTGTGTATCAAACCAGGAGAACATGGAAGTACATTTGGTGGGAACCCATTGGCAAGTGCT 1166
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      GTGGCAGTTGCATCACTGAAAGTAGTTACAGATGAAGGTCTCGTTGAAAGGGCTGCAAAG 1226
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      TTAGGACAAGAGTTCAGAGATCAGCTACAGAAGGTTCAACAGAGATTCCCGCAAATCATA 1286
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      AGGGAAGTACGTGGGAGGGGTTTGCTTAATGCAGTGGATCTAAGCAACGAAGCTTTATCC 1346
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      CCTGCTTCTGCTTACGACATCTGCATCAAGCTGAAGGAGAGAGGCGTTCTGGCAAAGCCC 1406
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      ACACATGACACCATAATCAGATTAGCGCCTCCGCTGTCAATCAGTCCTGAGGAGCTTGCA 1466
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      GAAGCATCGAAGGCGTTCAGCGATGTGCTTGAGCATGACCTGCCACAGCTGCAGAAGCAG 1526
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      ATCAAGAAGACAGAATCCGCGGCAGAAAAACAATCCTGTGACAGATGCGGCAGAGACTTG 1586
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      TACTGATGAGTGATAGACGAGACAATGAAACGTTTCCAGAGGCACCCGTTTCGCCCAAAT 1646
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      AAAATAGCAGAACACACCTCGCGAATTCATAGCTCATTGTAGTAGTAGAGTAGGATATAT 1706
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      ACACCTCCTTGTTGCGATGTCTGGGACATATGGTCCAGGGATTTGTCGCCTAATCGAGCT 1766
consensus_11038#1      ------------------------------------------------------------
consensus_11038#2      ------------------------------------------------------------
                                                                                   

consensus_11038#0      GGTTGCAAACAAATGGGGTAGCATTATTCTAGTCTATCATATCATGCAGAAGAATCTT 1824
consensus_11038#1      ----------------------------------------------------------
consensus_11038#2      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)