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Oryza sativa
cluster # 11039 cluster # 11039       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11039#0 length = 1497 sequences # 5  
consensus_11039#1 length = 633 sequences # 2  
consensus_11039#2 length = 352 sequences # 1  

consensusID : consensus_11039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1497
fasta sequence
                              [AAGCAGCTAGCTAGCACTACTGCCCAGCAACAAGCTAGAGAGATTTGCCAAAAGAAAAAATGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTACGGCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCGTGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGTTCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCCGCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGGAGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTCGCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAGGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGCGGCGTG-AAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAGAGGAGTGCGACGCCGCAGCCGGAGGAGGGTACGGCCGCCACCACGGCGCCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCCATCGAGGGTGTCAACGGCTGCGGCGCCGGCGGGTACAACTACAACCGCCACCAAGCCGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACTGCCGCCGCGTATGGCAACGCCTCCAACAAGCAGCACTTCACTGCCGCCGCCGCCGGCCACGACAGCAGCGGCGGCCATACCCAATACCACCACCAATCCTACGAATGCGAGGAGGAAGATTCCGACGAGGACGACTGCGAGGACGACGACGACGACGAGAGCGACGACGACGACGACGACGGCCACTGCCCACCTAGCCGCCAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAAGCAGCACGCCGGCGGCCGCAACCACTACCATGCATACGAGCGCCACGAGGAGCACGGCGGCGGCGCGCAACGCTACCAGAAGTACGAGAGCTCCACCCAGGTGGGCTACGCCGGCGGCGGCGGCGGCAACGGCGGATGCGTGCGTGGCAATGCCAAGCCATGTTTCCGAATCATGGCCTAATCCCAAACTAATTAACCGCGCGTAAGTAAAAAAAAAATATCAATTGCGTTGCTGATGCGCTTAAAATAAACTGTTCGACGCTTGGCTTAAGAAGTTACTATTACTACTAAGATCTCTAATGTATCAGAAAATAAATTGTATGTCTTATTATAGATGCTCTGCATCCACTATGTGGTAAATGATGATAATGTATAAGGTTTTATAAAGGTTT]

[+] EMBL AK072044             [AAGCAGCTAGCTAGCACTACTGCCCAGCAACAAGCTAGAGAGATTTGCCAAAAGAAAAAATGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTACGGCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCGTGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGTTCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCCGCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGGAGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTCGCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAGGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGCGGCGTG AAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAGAGGAGTGCGACGCCGCAGCCGGAGGAGGGTACGGCCGCCACCACGGCGCCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCCATCGAGGGTGTCAACGGCTGCGGCGCCGGCGGGTACAACTACAACCGCCACCAAGCCGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACTGCCGCCGCGTATGGCAACGCCTCCAACAAGCAGCACTTCACTGCCGCCGCCGCCGGCCACGACAGCAGCGGCGGCCATACCCAATACCACCACCAATCCTACGAATGCGAGGAGGAAGATTCCGACGAGGACGACTGCGAGGACGACGACGACGACGAGAGCGACGACGACGACGACGACGGCCACTGCCCACCTAGCCGCCAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAAGCAGCACGCCGGCGGCCGCAACCACTACCATGCATACGAGCGCCACGAGGAGCACGGCGGCGGCGCGCAACGCTACCAGAAGTACGAGAGCTCCACCCAGGTGGGCTACGCCGGCGGCGGCGGCGGCAACGGCGGATGCGTGCGTGGCAATGCCAAGCCATGTTTCCGAATCATGGCCTAATCCCAAACTAATTAACCGCGCGTAAGTAAAAAAAAAATATCAATTGCGTTGCTGATGCGCTTAAAATAAACTGTTCGACGCTTGGCTTAAGAAGTTACTATTACTACTAAGATCTCTAATGTATCAGAAAATAAATTGTATGTCTTATTATAGATGCTCTGCATCCACTATGTGGTAAATGATGATAATGT                    ]
[+] EMBL AK099048             [      CTAGCTAGCACTACTGCCCAGCAACAAGCTAGAGAGATTTGCCAAAAGAAAAAATGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTACGGCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCGTGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGTTCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCCGCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGGAGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTCGCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAGGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGCGGCGTG AAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAGAGGAGTGCGACGCCGCAGCCGGAGGAGGGTACGGCCGCCACCACGGCGCCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCCATCGAGGGTGTCAACGGCTGCGGCGCCGGCGGGTACAACTACAACCGCCACCAAGCCGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACTGCCGCCGCGTATGGCAACGCCTCCAACAAGCAGCACTTCACTGCCGCCGCCGCCGGCCACCACAGCAGCGGCGGCCATACCCAATACCACCACCAATCCTACGAATGCGAGGAGGAAGATTCCGACGAGGACGACTGCGAGGACGACGACGACGACGAGAGCGACGACGACGACGACGACGGCCACTGCCCACCTAGCCGCCAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAAGCAGCACGCCGGCGGCCGCAACCACTACCATGCATACGAGCGCCACGAGGAGCACGGCGGCGGCGCGCAACGCTACCAGAAGTACGAGAGCTCCACCCAGGTGGGCTACGCCGGCGGCGGCGGCGGCAACGGCGGATGCGTGCGTGGCAATGCCAAGCCATGTTTCCGAATCATGGCCTAATCCCAAACTAATTAACCGCGCGTAAGTAAAAAAAAAATATCAATTGCGTTGCTGATGCGCTTAAAATAAACTGTTCGACGCTTGGCTTAAGAAGTTACTATTACTACTAAGATCTCTAATGTATCAGAAAATAAATTGTATGTCTTATTATAGATGCTCTGCATCCACTATGTGGTAAATGATGATAATGTATAAGGTTTTATAAAGGTTT]
[+] EMBL CB671872             [                     GCCCAGCCACAAGCTAGAGAGATTTGCCAAAAGAAAAAATGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTAAGGCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCGTGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGTTCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCCGCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGGAGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTCGCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAGGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGCGGCGTG AAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAAAGGAGTGCGACGCCGCAGCCGGAGGAGGGTACGGCCGCCACCACGGCGCCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA754334             [                         AGCAACAAGCTAGAGAGATTTGCCAAAAGAAAAAATGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTACGGCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCGTGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGTTCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCCGCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGGAGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTCGCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAGGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGCGGCGTG AAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCGTGCAGAAGCAGTACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU069076             [                                                                                                                                                                                                                                                                                                                                                                                                    CGGAGGCGGCGGCGGCTGCGGCGGCTACG TCGCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAGGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGNGCCGGCGCCGGCGGNGTGNAAGAAGCAGTACTCCTACCGCNAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCNTGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAGAGGAGTNCGACGCCGCAGCCGGAGGAGGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_11039#0 AAGCAGCTAGCTAGCACTACTGCCCAGCAACAAGCTAGAGAGATTTGCCAAAAGAAAAAA TGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTACG GCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCG TGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGT TCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCC GCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGG AGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTC GCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACGTACCAGCACGAGGTGTTGAAAG GGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGCG GCGTGAAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTC GCCACAACGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAGAGGAGT GCGACGCCGCAGCCGGAGGAGGGTACGGCCGCCACCACGGCGCCGGCGGCGGCGCCGTGA AGCAGCACGCCACCTACAAGCAGCACCAGGCCATCGAGGGTGTCAACGGCTGCGGCGCCG GCGGGTACAACTACAACCGCCACCAAGCCGTCGCCGTGGCTGGCGGCGGGCAGCACCACT ACGGTGGCGCCACTGCCGCCGCGTATGGCAACGCCTCCAACAAGCAGCACTTCACTGCCG CCGCCGCCGGCCACGACAGCAGCGGCGGCCATACCCAATACCACCACCAATCCTACGAAT GCGAGGAGGAAGATTCCGACGAGGACGACTGCGAGGACGACGACGACGACGAGAGCGACG ACGACGACGACGACGGCCACTGCCCACCTAGCCGCCAAGGCAGCGTCCACAGCTACCACC AGGCGGCGTACCAGCACGAGGAGAAGCAGCACGCCGGCGGCCGCAACCACTACCATGCAT ACGAGCGCCACGAGGAGCACGGCGGCGGCGCGCAACGCTACCAGAAGTACGAGAGCTCCA CCCAGGTGGGCTACGCCGGCGGCGGCGGCGGCAACGGCGGATGCGTGCGTGGCAATGCCA AGCCATGTTTCCGAATCATGGCCTAATCCCAAACTAATTAACCGCGCGTAAGTAAAAAAA AAATATCAATTGCGTTGCTGATGCGCTTAAAATAAACTGTTCGACGCTTGGCTTAAGAAG TTACTATTACTACTAAGATCTCTAATGTATCAGAAAATAAATTGTATGTCTTATTATAGA TGCTCTGCATCCACTATGTGGTAAATGATGATAATGTATAAGGTTTTATAAAGGTTT



consensusID : consensus_11039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [GGCGCCGCGGTGGCCAGAGGCACGACGCCCTACCAGCACGAGTGTTGAAGGAGTACGAGAGCGCCGCGGTGGGTA--CGCCGCCGCTC-GCCACAACGGCG-CCGGCGTGAAG-AAGCAGTACTCCTACC--GCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTC-GCCAC-AACGGCGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCACGAGAAAGAGGATCAGTACGACGCCGCCGGAGGGTACGGCCGCCACCACGGCGGCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCGATCGAGGGTGTCAACGGCTGCGGCGCCGGC-GGGTACAACTACAACCGCCACCACGCGGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACCGCCACTGCC-GCCGCGTACGGGAGGACTGCCTCCAACAAGCAGCACTTCACTGCCGGCGGCGGCCATACCCAATACCGCCACCAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCGACGACGACGACGAGAGCGACGACGACGACGACCTCTGCCCACCAAGCCGCCAAGGCAGCGTCCCACAGCGGCGTACCAGCACGAGGAGAAGCAG]

[-] EMBL BU667254             [GGCGCCGCGGTGGCCAGAGGCACGACGCCCTACCAGCACGAGTGTTGAAGGAGTACGAGAGCGCCGCGGTGGGTA  CGCCGCCGCTC GCCACAACGGCG CCGGCGTGAAG AAGCAGTACTCCTACC  GCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTC GCCAC AACGGCGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCACGAGAAAGAGGATCAGTACGACGCCGCCGGAGGGTACGGCCGCCACCACGGCGGCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCGATCGAGGGTGTCAACGGCTGCGGCGCCGGC GGGTACAACTACAACCGCCACCACGCGGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACCGCCACTGCC GCCGCGTACGGGAGGACTGCCTCCAACAAGCAGCACTTCACTGCCGGCGGCGGCCATACCCAATACCGCCACCAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCGACGACGACGACGAGAGCGACGACGACGACGACCTCTGCCCACCAAGCCGCCAAGGCAGCGTCC                               ]
[-] EMBL BU667297             [                                                                     TGGGTACCCCCCCCCGTTCTCCCACAACGGCGCCCGGCGTGAAGAAACCAGTACTCTTACCCTGCGTAGAAGAGGAGTACGACGCCGGTGGGTACGCTCTGCCACAAACGGCGGCGGCGGCGTGCAGAA CAGTACTCCTCCTACCACGAGAAAGAGGATCAGTACGACGCCGCCGGAGGGTACGGCCGCCACCACGGCGGCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCGATCGAGGGTGTCAACGGCTGCGGCGCCGGCAGGGTACAACTACAACCGCCACCACGCGGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACCGCCACTGCCAGCCGCGTACGGGAGGACTGCCTCCAACAAGCAGCACTTCACTGCCGGCGGCGGCCATACCCAATACCGCCACCAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCGACGACGACGA       GACGACGACGACGACCTCTGCCCACCAAGCCGCCAA  CCGCGTCTCACAGCGGCGTACCAGCACGAGGAGAAGCAG]


>consensus_11039#1 GGCGCCGCGGTGGCCAGAGGCACGACGCCCTACCAGCACGAGTGTTGAAGGAGTACGAGA GCGCCGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGTGAAGAAGCAGTACTC CTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCTCGCCACAACGGCGGCGGCGG CGTGCAGAAGCAGTACTCCTCCTACCACGAGAAAGAGGATCAGTACGACGCCGCCGGAGG GTACGGCCGCCACCACGGCGGCGGCGGCGGCGCCGTGAAGCAGCACGCCACCTACAAGCA GCACCAGGCGATCGAGGGTGTCAACGGCTGCGGCGCCGGCGGGTACAACTACAACCGCCA CCACGCGGTCGCCGTGGCTGGCGGCGGGCAGCACCACTACGGTGGCGCCACCGCCACTGC CGCCGCGTACGGGAGGACTGCCTCCAACAAGCAGCACTTCACTGCCGGCGGCGGCCATAC CCAATACCGCCACCAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCGA CGACGACGACGAGAGCGACGACGACGACGACCTCTGCCCACCAAGCCGCCAAGGCAGCGT CCCACAGCGGCGTACCAGCACGAGGAGAAGCAG



consensusID : consensus_11039#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence
                              [GAGGTGTGTTCCATACGCTGCGGCAGCCGGCAGGGTACAAACTACAACCGCCACCACGCAGGTCCCGTGGCTGCGCGGCAAGCACCACTACGGTGGCAGCCACCAGCCACTGCCGCCAGCGTACGGGAGGACTGCACTCCAAACAAGCAGCACATTCACTGCCGGCGGCAGCACATACCCAAATACCGCCAACCAAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCGACGACGACGACGAGAGCGACGACGACGACGACCTCTGCCCACCAAGCCGCACAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAACAGCACGCCGG]

[+] EMBL BI808286             [GAGGTGTGTTCCATACGCTGCGGCAGCCGGCAGGGTACAAACTACAACCGCCACCACGCAGGTCCCGTGGCTGCGCGGCAAGCACCACTACGGTGGCAGCCACCAGCCACTGCCGCCAGCGTACGGGAGGACTGCACTCCAAACAAGCAGCACATTCACTGCCGGCGGCAGCACATACCCAAATACCGCCAACCAAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCGACGACGACGACGAGAGCGACGACGACGACGACCTCTGCCCACCAAGCCGCACAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAACAGCACGCCGG]


>consensus_11039#2 GAGGTGTGTTCCATACGCTGCGGCAGCCGGCAGGGTACAAACTACAACCGCCACCACGCA GGTCCCGTGGCTGCGCGGCAAGCACCACTACGGTGGCAGCCACCAGCCACTGCCGCCAGC GTACGGGAGGACTGCACTCCAAACAAGCAGCACATTCACTGCCGGCGGCAGCACATACCC AAATACCGCCAACCAAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGCG ACGACGACGACGAGAGCGACGACGACGACGACCTCTGCCCACCAAGCCGCACAAGGCAGC GTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAACAGCACGCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11039#0      AAGCAGCTAGCTAGCACTACTGCCCAGCAACAAGCTAGAGAGATTTGCCAAAAGAAAAAA 60
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      TGGCGATGGCTAGGCGCGGCAATGGCGGCTACCAGTACGGCGCCTACAGCTACGGCTACG 120
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GCTACAGCAAGCCGCAGGTGAACTACCACAGCCAGAGCTCCGAGAGCGTCACCACCGTCG 180
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      TGACGAAGATGGACGAGATGAGCGTCCACGAGAACGCCGTGCAGAAGATGTCGTCGTCGT 240
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      TCCGGGAGGAGAAGGTGTACGAGCAGCAGGGCGGCGCCGGCGGCGACGTGCAGGTGTGCC 300
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GCAATGGCGGCGCTGCTGCAGGCGCCGTGCAGAAGCACACCTACGAGGAGAAGAAGGAGG 360
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      AGGAGGTGTACGAGGAGAGCAACCATGGCGGAGGCGGCGGCGGCTGCGGCGGCTACGCTC 420
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GCCAGCACGGCGCCGGCGGTGGGCAGAAGCACGCCACG-TACCAGCACGAGGTGTTGAAA 479
consensus_11039#1      --------GGCGCCG-CGGTGGCCAGAGGCACGACGCCCTACCAGCACGAG-TGTTGAAG 50
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GGGTACGAGAGCGCCGGCGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCGCCGGC 539
consensus_11039#1      GAGTACGAGAGCGCCG-CGGTGGGTACGCCGCCGCTCGCCACAACGGCGCCGGCG----- 104
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GGCGTGAAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCT 599
consensus_11039#1      ----TGAAGAAGCAGTACTCCTACCGCGAGGAAGAGGAGTACGACGCCGGTGGGTACGCT 160
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      CGCCACAACGGCGGCGGCG---TGCAGAAGCAGTACTCCTCCTACCGCCGCGACGAAGAG 656
consensus_11039#1      CGCCACAACGGCGGCGGCGGCGTGCAGAAGCAGTACTCCTCCTACCACGAGAAAGAGGAT 220
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GAGTGCGACGCCGCAGCCGGAGGAGGGTACGGCCGCCACCACGGCGCCGGCGGCGGCGCC 716
consensus_11039#1      CAGTACGACGCCGCC------GGAGGGTACGGCCGCCACCACGGCGGCGGCGGCGGCGCC 274
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      GTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCCATCGAGGGTGTCAACGGCTGCGGC 776
consensus_11039#1      GTGAAGCAGCACGCCACCTACAAGCAGCACCAGGCGATCGAGGGTGTCAACGGCTGCGGC 334
consensus_11039#2      ------------------------------------GAGGTGTGTTCCATACGCTGCGGC 24
                                                              * * **  **   ********

consensus_11039#0      -GCCGGC-GGGTACAA-CTACAACCGCCACCAAGCCGTCGCCGTGGCTGGCGGCGGGCAG 833
consensus_11039#1      -GCCGGC-GGGTACAA-CTACAACCGCCACCACGCGGTCGCCGTGGCTGGCGGCGGGCAG 391
consensus_11039#2      AGCCGGCAGGGTACAAACTACAACCGCCACCACGCAGGTCCCGTGGCTG--CGCGGCAAG 82
                        ****** ******** *************** ** *   *********   ****  **

consensus_11039#0      CACCACTACGGTGGC-GCCAC-------TGCCGCC-GCGTATGGCAA---CGC-CTCCAA 880
consensus_11039#1      CACCACTACGGTGGC-GCCACC-GCCACTGCCGCC-GCGTACGGGAGGACTGC-CTCCAA 447
consensus_11039#2      CACCACTACGGTGGCAGCCACCAGCCACTGCCGCCAGCGTACGGGAGGACTGCACTCCAA 142
                       *************** *****       ******* ***** ** *     ** ******

consensus_11039#0      -CAAGCAGCAC-TTCACTGCCGCCGCCGCCGGCCACGACAGCAGCGGCGGC-CATACCCA 937
consensus_11039#1      -CAAGCAGCAC-TTCACTGCCG---------------------GCGGCGGC-CATACCCA 483
consensus_11039#2      ACAAGCAGCACATTCACTGCCG---------------------GCGGCAGCACATACCCA 181
                        ********** **********                     ***** ** ********

consensus_11039#0      A-TACCACCACC--AATCCTACGAATGCGAGGAGGAAGATTCCGACGAGGACGACTGCGA 994
consensus_11039#1      A-TACCGCCACC--AATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGC-- 538
consensus_11039#2      AATACCGCCAACCAAATCCTACGGTTGCGAGGAGGAAGATTCTGACGACGACGACTGC-- 239
                       * **** *** *  *********  ***************** ***** *********  

consensus_11039#0      GGACGACGACGACGACGAGAGCGACGACGACGACGACGACGGCCACTGCCCACCTAGCCG 1054
consensus_11039#1      ----GACGACGACGACGAGAGCGACGACGACGACGAC------CTCTGCCCACCAAGCCG 588
consensus_11039#2      ----GACGACGACGACGAGAGCGACGACGACGACGAC------CTCTGCCCACCAAGCCG 289
                           *********************************      * ********* *****

consensus_11039#0      C-CAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAAGCAGCACG 1113
consensus_11039#1      C-CAAGGCAGCGTC--------CCAC--AGCGGCGTACCAGCACGAGGAGAAGCAG---- 633
consensus_11039#2      CACAAGGCAGCGTCCACAGCTACCACCAGGCGGCGTACCAGCACGAGGAGAA-CAGCACG 348
                       * ************        ****   *********************** ***    

consensus_11039#0      CCGGCGGCCGCAACCACTACCATGCATACGAGCGCCACGAGGAGCACGGCGGCGGCGCGC 1173
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      CCGG-------------------------------------------------------- 352
                                                                                   

consensus_11039#0      AACGCTACCAGAAGTACGAGAGCTCCACCCAGGTGGGCTACGCCGGCGGCGGCGGCGGCA 1233
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      ACGGCGGATGCGTGCGTGGCAATGCCAAGCCATGTTTCCGAATCATGGCCTAATCCCAAA 1293
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      CTAATTAACCGCGCGTAAGTAAAAAAAAAATATCAATTGCGTTGCTGATGCGCTTAAAAT 1353
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      AAACTGTTCGACGCTTGGCTTAAGAAGTTACTATTACTACTAAGATCTCTAATGTATCAG 1413
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      AAAATAAATTGTATGTCTTATTATAGATGCTCTGCATCCACTATGTGGTAAATGATGATA 1473
consensus_11039#1      ------------------------------------------------------------
consensus_11039#2      ------------------------------------------------------------
                                                                                   

consensus_11039#0      ATGTATAAGGTTTTATAAAGGTTT 1497
consensus_11039#1      ------------------------
consensus_11039#2      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)