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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1010 fasta sequence
[TACGTAACCGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATAGCTCGATTTTGCTGCCAATACTTCATACCATGATAAGAAAAGCTGGATCTCAAATCTGAGAGAAGGTGCTCAGAATCCATAAAAGCATAATAACATCCTAGCTGCTGCAAAGTCAGTCATACTAGCCTTAGGTCATTCATTAGTGGTAACAAAACAATACATACCCTAAACGCTGGATCAGTGGTCACCAAAGAGTAATCAGTCTGATAAAAACGACATCGCAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTTTGTGGCGTCAACAGTCACTTGCTACAGAAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTTGCCTCTTAGC-TTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGT-CATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTTCAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAG-ATTATGTTTCGCAAACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGTGAAGCTAAATGGTTCCCCATTAGCAACAGCTAAGAAGCTAAAGAGGCCCTGAGGTTCAGTCTTCAGCACTACATCTTTAGCATCTGGCAGTGAAATAGTCAAGTAAATCTTCTCAGAGCGTTGAGCCCACAGCACCTCAGGTTGACGACTCATGGCGAAATGGCGGCGCAGAGGAGGAGGAGGAGGAGAGCCCCCGAGGAGAGTAGGGTTTTGCGGATTGGTGGTGGTGGGGAAAGCGAGGAGCAGCGAGCAGAGGACGATGAGGAGGGCAGCGGCAGCAGGATCGCTAC]
[+] EMBL CF317205 [TACGTAACCGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATAGCTCGATTTTGCTGCCAATACTTCATACCATGATAAGAAAAGCTGGATCTCAAATCTGAGAGAAGGTGCTCAGAATCCATAAAAGCATAATAACATCCTAGCTGCTGCAAAGTCAGTCATACTAGCCTTAGGTCATTCATTAGTGGTAACAAAACAATACATACCCTAAACGCTGGATCAGTGGTCACCAAAGAGTAATCAGTCTGATAAAAACGACATCGCAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTTTGTGGCGTCAACAGTCACTTGCTACAGAAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTTGCCTCTTAGC TTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGT CATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTT ]
[+] EMBL CF316079 [ TTTTATAGCTCGAGTTTGCTGCCAATACTTCATACCATGATAAGAAAAGCTGGATCTCAAATCTGAGAGAAGGTGCTCAGAATCCATAAAAGCATAATAACATCCTAGCTGCTGCAAAGTCAGTCATACTAGCCTTAGGTCATTCATTAGTGGTAACAAAACAATACATACCCTAAACGCTGGATCAGTGGTCACCAAAGAGTAATCAGTCTGATAAAAACGACATCGCAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTTTGTGGCGTCAACAGTCACTTGCTACAGAAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTTGCCTCTTAGC TTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGT CATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTCATCCTCATC ]
[-] EMBL BI805829 [ tttttTCAAATCTGAGAGAAGGTGCTCAGAATCCATAAAAGCATAATAACATCCTAGCTGCTGCAAAGTCAGTCATACTAGCCTTAGGTCATTCATTAGTGGTAACAAAACAATACATACCCTAAACGCTGGATCAGTGGTCACCAAAGAGTAATCAGTCTGATAAAAACGACATCGCAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTTTGTGGCGTCAACAGTCACTTGCTACAGAAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTTGCCTCTTAGC TTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGT CATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTCATCCTCATCG ACCATTTGTc ]
[-] EMBL BI795849 [ AAAAGCATAATAACATCCTAGCTGCTGCAAAGTCAGTCATACTAGCCTTAGGTCATTCATTAGTGGTAACAAAACAATACATACCCTAAACGCTGGATCAGTGGTCACCAAAGAGTAATCAGTCTGATCAAAACGACATCGCAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATG TTGCGAAACTACCGACTAAGCAATGACAAGTCTACTTTGTGGCGTCAACAGTCACTTGCTACAGAAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTGGCCTCTTAGCTTTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGTACATTTCCCTCATCAAAGGCATCATCTGAATCCAGTGGTGCATCAGACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTTCAG AAACGCTT CACCAACTTTTCTTTTC TTCTGGATCGAACAGCATTATGTT ]
[-] EMBL CF316078 [ ATCATCATCATCAGTTTCGTCTCTGT CATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTTCAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAG ATTATGTTTCGCAAACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGTGAAGCTAAATGGTTCCCCATTAGCAACAGCTAAGAAGCTAAAGAGGCCCTGAGGTTCAGTCTTCAGCACTACATCTTTAGCATCTGGCAGTGAAATAGTCAAGTAAATCTTCTCAGAGCGTTGAGCCCACAGCACCTCAGGTTGACGACTCATGGCGAAATGGCGGCGCAGAGGAGGAGGAGGAGGAGAGCCCCCGAGGAGAGTAGGGTTTTGCGGATTGGTGGTGGTGGGGAAAGCGAGGAGCAGCGAGCAGAGGACGATGAGGAGGGCAGCGGCAGCAGGATCGCTAC]
[-] EMBL CF317204 [ ATCAGTTTCGTCTCTGT CATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTTCAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAG ATTATGTTTCGCAAACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGTGAAGCTAAATGGTTCCCCATTAGCAACAGCTAAGAAGCTAAAGAGGCCCTGAGGTTCAGTCTTCAGCACTACATCTTTAGCATCTGGCAGTGAAATAGTCAAGTAAATCTTCTCAGAGCGTTGAGCCCACAGCACCTCAGGTTGACGACTCATGGCGAAATGGCGGCGCAGAGGAGGAGGAGGAGGAGAGCCCCCGAGGAGAGTAGGGTTTTGCGGATTGGTGGTGGTGGGGAAAGCGAGGAGCAGCGAGCAGAGGACGATGAGGAGGGCAGCGGCAGCAGGATCGCTAC]
consensusID : consensus_11042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[TTTTTTTTTTTTTTTTTTACTAGCCTTAGGTCATTCATTAGGGGTAACAAAACAATACATACCCTAAACGCTGGATCAGGGGTCACCAAAGAGTAATCAGTCTGATAAAAACGACATCGCAAGCATATCAAAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTCTGTGGCGTCAACAGTCACTTGCTACAGGAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTTGCCTCTTAGCTTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGTCATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAAACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTTCAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAGATTATGTTTCGCAAACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGTGAAGCTAAATGGTTCCCCATTAGCAACAGCTAAAAAGCTAAAGAGGCCCTGAGGTTCAGTCTTCAGCACTACATCCCCCTTGGCTCGTCC]
[+] EMBL CA759408 [TTTTTTTTTTTTTTTTTTACTAGCCTTAGGTCATTCATTAGGGGTAACAAAACAATACATACCCTAAACGCTGGATCAGGGGTCACCAAAGAGTAATCAGTCTGATAAAAACGACATCGCAAGCATATCAAAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTCTGTGGCGTCAACAGTCACTTGCTACAGGAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTTGCCTCTTAGCTTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTCGTCTCTGTCATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAAACTCTTCATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTTCAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAGATTATGTTTCGCAAACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGTGAAGCTAAATGGTTCCCCATTAGCAACAGCTAAAAAGCTAAAGAGGCCCTGAGGTTCAGTCTTCAGCACTACATCCCCCTTGGCTCGTCC]
consensusID : consensus_11042#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence
[CTTAGATCATTCATTANTGGTAACNAAACAATACATACCCTANACGCTGGCNNAGTGGTCACNNAAGAGTAATCAGTCTGATANANNCGACATCGNAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCNATNACAAGTCTACTTTGTGGCNTC]
[-] EMBL OSC22571 [CTTAGATCATTCATTANTGGTAACNAAACAATACATACCCTANACGCTGGCNNAGTGGTCACNNAAGAGTAATCAGTCTGATANANNCGACATCGNAAGCATATCAGAACCATGCCAATAGTCTGGTACTCTGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCNATNACAAGTCTACTTTGTGGCNTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11042#0 TACGTAACCGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATAGCTCGATTTTGCTGCCA 60
consensus_11042#1 ------------------------------------------------------------
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 ATACTTCATACCATGATAAGAAAAGCTGGATCTCAAATCTGAGAGAAGGTGCTCAGAATC 120
consensus_11042#1 ------------------------------------------------------------
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 CATAAAAGCATAATAACATCCTAGCTGCTGCAAAGTCAGTCATACTAGCCTTAGGTCATT 180
consensus_11042#1 -------------------------TTTTTTTTTTTTTTTTTTACTAGCCTTAGGTCATT 35
consensus_11042#2 -------------------------------------------------CTTAGATCATT 11
***** *****
consensus_11042#0 CATTAGTGGTAACAAAACAATACATACCCTAAACGCTGGATCAGTGGTCACCAAAGAGTA 240
consensus_11042#1 CATTAGGGGTAACAAAACAATACATACCCTAAACGCTGGATCAGGGGTCACCAAAGAGTA 95
consensus_11042#2 CATTANTGGTAACNAAACAATACATACCCTANACGCTGGCNNAGTGGTCACNNAAGAGTA 71
***** ****** ***************** ******* ** ****** *******
consensus_11042#0 ATCAGTCTGATAAAAACGACATCGCAAGCATATCAGAACCATGCCAATAGTCTGGTACTC 300
consensus_11042#1 ATCAGTCTGATAAAAACGACATCGCAAGCATATCAAAACCATGCCAATAGTCTGGTACTC 155
consensus_11042#2 ATCAGTCTGATANANNCGACATCGNAAGCATATCAGAACCATGCCAATAGTCTGGTACTC 131
************ * ******** ********** ************************
consensus_11042#0 TGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTTTGTG 360
consensus_11042#1 TGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCAATGACAAGTCTACTCTGTG 215
consensus_11042#2 TGGTGCTAGCTGCAGATGTTTGCGAAACTACCGACTAAGCNATNACAAGTCTACTTTGTG 191
**************************************** ** *********** ****
consensus_11042#0 GCGTCAACAGTCACTTGCTACAGAAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTT 420
consensus_11042#1 GCGTCAACAGTCACTTGCTACAGGAAGTCTACTGCATTCATCGAAGCTGGCTAATCACTT 275
consensus_11042#2 GCNTC------------------------------------------------------- 196
** **
consensus_11042#0 GCCTCTTAGCTTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTC 480
consensus_11042#1 GCCTCTTAGCTTTTCAAGGTCAGGGAGATAAAGCATTCCATCATCATCATCATCAGTTTC 335
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 GTCTCTGTCATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAGACTCTTC 540
consensus_11042#1 GTCTCTGTCATTTCCCTCATCAAAGGCATCATCTGAATCCACTGGTGCATCAAACTCTTC 395
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 ATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTT 600
consensus_11042#1 ATCCTCATCGCACCATTTGTTCCAGTCAACTTTGATATATGGATGCTTTTCTTCTGACTT 455
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 CAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAGATTATGTTTCGCAA 660
consensus_11042#1 CAGCAAACGCTTCCACCAACCTTTCTTTTCTTTCTGGATCGAACAGATTATGTTTCGCAA 515
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 ACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGT 720
consensus_11042#1 ACCCATCTTTGTCTTAGTTTTACTTCCCTCTGGCAGTACAGAATCAAACAGCTCCAAAGT 575
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 GAAGCTAAATGGTTCCCCATTAGCAACAGCTAAGAAGCTAAAGAGGCCCTGAGGTTCAGT 780
consensus_11042#1 GAAGCTAAATGGTTCCCCATTAGCAACAGCTAAAAAGCTAAAGAGGCCCTGAGGTTCAGT 635
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 CTTCAGCACTACATCTTTAGCATCTGGCAGTGAAATAGTCAAGTAAATCTTCTCAGAGCG 840
consensus_11042#1 CTTCAGCACTACATCCCCCTTGGCTCGTCC------------------------------ 665
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 TTGAGCCCACAGCACCTCAGGTTGACGACTCATGGCGAAATGGCGGCGCAGAGGAGGAGG 900
consensus_11042#1 ------------------------------------------------------------
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 AGGAGGAGAGCCCCCGAGGAGAGTAGGGTTTTGCGGATTGGTGGTGGTGGGGAAAGCGAG 960
consensus_11042#1 ------------------------------------------------------------
consensus_11042#2 ------------------------------------------------------------
consensus_11042#0 GAGCAGCGAGCAGAGGACGATGAGGAGGGCAGCGGCAGCAGGATCGCTAC 1010
consensus_11042#1 --------------------------------------------------
consensus_11042#2 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||