These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1231 fasta sequence [ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTATTAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG-AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC-GGTGCTC-TGGGCGAGGAAGGGCAGCGCGGTGCAC-AGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGT--GGGCCTCGGCGTCGTCGGCCGAGGCGACCG-CTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGTTCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCGTCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTC-TTCGCCCGCCGCGACAC-GGAGCCCGAGTGCGGCGGCGGCG-TCGGGTATTAC-GACTA-CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT-CCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCCGCATGGTACACTTGCTTGATTCAATTGTGGT] [+] EMBL OSC782 [ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTATTAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAG AAGNAGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAG NGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTTCTTCGCTTGGCGGGTGCTCTTGGGCGAGGAAGGGCAGCGCGGTGCACAAGCCTCCGCCTGCTCAGCAACCTGCGGCG G CNGCGTTGGGGCCTCGGCGT ] [+] EMBL OS0960A [ TCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGAGGAAGGGCAGCGCGGTGCAC AGCCTCCGNCTGCTCAGCAACCTGCGGCGCGCCGGCGT GGGCCTCGGCGTCGTCGGCCGAGGCGACCG CTGGGGTACGGCGAGCGGGAGTACTCGAT ] [+] EMBL AK061293 [ CATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGAGGAAGGGCAGCGCGGTGCAC AGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGT GGGCCTCGGCGTCGTCGGCCGAGGCGACCGCCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGTTCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCGTCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTC TTCGCCCGCCGCGACAC GGAGCCCGAGTGCGGCGGCGGCG TCGGGTATTAC GACTA CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT CCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCCGCATGGTACACTTGCTTGATTCAATTGTGGT] [+] EMBL C74741 [ CACGNGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAA CAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCA CGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGANGAAGGGCA CGCGGTGCAC A NCTCC ] [+] EMBL BI807256 [ CCCGTACACGCCCGGGCTCT C GCGACGAGGACCGCTACTTCTTTCGCCCGCCGCGACACTGGAGCCCGAGT CGGC GCGGCGTTCGGGTATTACGGACTACCTATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACAACGAGAGCTTCCGCGACGGTGCGATGGAGGA CAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCT CAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCNATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTC AATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTTCCCTTGA CTTTGATATTaaaaaa ] [+] EMBL AU068939 [ GCGGCGGCG TCGGGTATTAC GACTA CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGANGCGAGCGCCGCCGCCGTNACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGANGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTG ] [+] EMBL CB000051 [ GCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCACGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT CCTTGAGCATTGATATTGGTTTGGTTCATTGGGTGCGAATTGATATCTGTACATTTTGT ] consensusID : consensus_11051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCAAAAAAAAAA] [+] EMBL AU082966 [CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11051#0 ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTAT 60 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 TAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACG 120 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 CGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAGAGCGGATCGGGTG 180 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 CTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCG 240 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 TTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATC 300 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 GGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGCGGTGCTCTGGGCGAGGAAGGGCAGCGCG 360 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 GTGCACAGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGTGGGCCTCGGCGTCGTC 420 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 GGCCGAGGCGACCGCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGT 480 consensus_11051#1 -------------------------------------------CGAGGAGACGCCGGCGT 17 ***************** consensus_11051#0 TCC-GGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCC-TGCATCGCCCCCGC 538 consensus_11051#1 TCCCGGTTCCGCAC-CCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGC 76 *** ********** ******** ************ ******** ************** consensus_11051#0 CGT-CCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCG 597 consensus_11051#1 CGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCG 136 *** ****************** ************************************* consensus_11051#0 ACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGGCG 657 consensus_11051#1 ACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCG 196 ********************************************************* ** consensus_11051#0 AGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCG 717 consensus_11051#1 AGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCG 256 ************************************************************ consensus_11051#0 AGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCA 777 consensus_11051#1 AGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCA 316 *********** ************************************************ consensus_11051#0 AGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCAT 837 consensus_11051#1 AGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCAT 376 ************************************************************ consensus_11051#0 GGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAAT 897 consensus_11051#1 GGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAAT 436 ************************************************************ consensus_11051#0 AAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACA 957 consensus_11051#1 AAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACA 496 ************************************************************ consensus_11051#0 GAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTAT 1017 consensus_11051#1 GAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTAT 556 ************************************************************ consensus_11051#0 TTTTCTTCCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACA 1077 consensus_11051#1 TTTTCAAAAAAAAAA--------------------------------------------- 571 ***** * consensus_11051#0 TTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTT 1137 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 CTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTA 1197 consensus_11051#1 ------------------------------------------------------------ consensus_11051#0 TCCGCATGGTACACTTGCTTGATTCAATTGTGGT 1231 consensus_11051#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||