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Oryza sativa
cluster # 11051 cluster # 11051       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11051#0 length = 1231 sequences # 7  
consensus_11051#1 length = 571 sequences # 1  

consensusID : consensus_11051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1231
fasta sequence
                              [ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTATTAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG-AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC-GGTGCTC-TGGGCGAGGAAGGGCAGCGCGGTGCAC-AGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGT--GGGCCTCGGCGTCGTCGGCCGAGGCGACCG-CTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGTTCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCGTCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTC-TTCGCCCGCCGCGACAC-GGAGCCCGAGTGCGGCGGCGGCG-TCGGGTATTAC-GACTA-CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT-CCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCCGCATGGTACACTTGCTTGATTCAATTGTGGT]

[+] EMBL OSC782               [ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTATTAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAG AAGNAGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAG NGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTTCTTCGCTTGGCGGGTGCTCTTGGGCGAGGAAGGGCAGCGCGGTGCACAAGCCTCCGCCTGCTCAGCAACCTGCGGCG G CNGCGTTGGGGCCTCGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OS0960A              [                                                                                                  TCACATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGAGGAAGGGCAGCGCGGTGCAC AGCCTCCGNCTGCTCAGCAACCTGCGGCGCGCCGGCGT  GGGCCTCGGCGTCGTCGGCCGAGGCGACCG CTGGGGTACGGCGAGCGGGAGTACTCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK061293             [                                                                                                     CATCAGCACACATCACACGCGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGAGGAAGGGCAGCGCGGTGCAC AGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGT  GGGCCTCGGCGTCGTCGGCCGAGGCGACCGCCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGTTCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCGTCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTC TTCGCCCGCCGCGACAC GGAGCCCGAGTGCGGCGGCGGCG TCGGGTATTAC GACTA CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT CCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCCGCATGGTACACTTGCTTGATTCAATTGTGGT]
[+] EMBL C74741               [                                                                                                                    CACGNGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAA CAAG AGCGGATCGGGTGCTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCGTTGGTGGCGGCA CGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATCGGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGC GGTGCTC TGGGCGANGAAGGGCA CGCGGTGCAC A NCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI807256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCCGTACACGCCCGGGCTCT C GCGACGAGGACCGCTACTTCTTTCGCCCGCCGCGACACTGGAGCCCGAGT CGGC GCGGCGTTCGGGTATTACGGACTACCTATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACAACGAGAGCTTCCGCGACGGTGCGATGGAGGA CAGCTCCTCGAGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCT CAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCNATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTC AATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTTCCCTTGA CTTTGATATTaaaaaa                                                                                                                                                                                        ]
[+] EMBL AU068939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCGGCGGCG TCGGGTATTAC GACTA CAATGGCGAGCCGGGCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGCTGGANGCGAGCGCCGCCGCCGTNACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGANGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTG                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB000051             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCACGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTT CCTTGAGCATTGATATTGGTTTGGTTCATTGGGTGCGAATTGATATCTGTACATTTTGT                                                                                                                                                    ]


>consensus_11051#0 ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTAT TAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACG CGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAGAGCGGATCGGGTG CTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCG TTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATC GGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGCGGTGCTCTGGGCGAGGAAGGGCAGCGCG GTGCACAGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGTGGGCCTCGGCGTCGTC GGCCGAGGCGACCGCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGT TCCGGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCCTGCATCGCCCCCGCCG TCCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACA CGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGGCGAGT GCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGC TGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGG CGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGC TGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAG ATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAG ATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTT TCTTCCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACATTT TGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTTCTT GGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTATCC GCATGGTACACTTGCTTGATTCAATTGTGGT



consensusID : consensus_11051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCAAAAAAAAAA]

[+] EMBL AU082966             [CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCAAAAAAAAAA]


>consensus_11051#1 CGAGGAGACGCCGGCGTTCCCGGTTCCGCACCCGTCGGCNCGGGTGCTCCGCNTAATCCC CCTGCATCGCCCCCGCCGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTAC TTCTTCGCCCGCCGCGACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTAC AATGGCGAGCCGGNCGAGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATG GAGGAGCAGCTCCTCGAGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGAC GCCGGCGTGGACGCCAAGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTA CAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATG ATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATAC ACCAGCTAAAAATACAGAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAAT ACATTTTTAAATTTATTTTTCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11051#0      ACGCGCTCGCTTCCTTCCCNCCTCGCCTCAACGCAAAGNAGNATCCCCCCCTATACCTAT 60
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      TAATACCTCATCTTGTCGTCTCGTATCATCTCATCTCATCACATCAGCACACATCACACG 120
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      CGCCGATTCCGAAGAAATCAATCAACCAACTACTAGGCGAAAGCAAGAGCGGATCGGGTG 180
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      CTGCATTTCGCGGTCGTTTTCTTCCTCTGAATTCTGGTGTTTGCGGTTGCGGCAATGGCG 240
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      TTGGTGGCGGCAGCGGCGGCGAATCCGAAGCAGAAACAGAAGCAGCAGAAGGCGTCGATC 300
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      GGGAGGCGGGCGTGGCGGCTGCTGCGCCTGGCGGTGCTCTGGGCGAGGAAGGGCAGCGCG 360
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      GTGCACAGCCTCCGCCTGCTCAGCAACCTGCGGCGCGCCGGCGTGGGCCTCGGCGTCGTC 420
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      GGCCGAGGCGACCGCTGGGGTACGGCGAGCGGGAGTACTCGATCGAGGAGACGCCGGCGT 480
consensus_11051#1      -------------------------------------------CGAGGAGACGCCGGCGT 17
                                                                  *****************

consensus_11051#0      TCC-GGTTCCGCACGCCGTCGGCGCGGGTGCTCCGCCTAATCCCC-TGCATCGCCCCCGC 538
consensus_11051#1      TCCCGGTTCCGCAC-CCGTCGGCNCGGGTGCTCCGCNTAATCCCCCTGCATCGCCCCCGC 76
                       *** ********** ******** ************ ******** **************

consensus_11051#0      CGT-CCCGGACACGCCCGGGCTCTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCG 597
consensus_11051#1      CGTACCCGGACACGCCCGGGCTNTACGGCGACGAGGACCGCTACTTCTTCGCCCGCCGCG 136
                       *** ****************** *************************************

consensus_11051#0      ACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGGCG 657
consensus_11051#1      ACACGGAGCCCGAGTGCGGCGGCGGCGTCGGGTATTACGACTACAATGGCGAGCCGGNCG 196
                       ********************************************************* **

consensus_11051#0      AGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCG 717
consensus_11051#1      AGTGCGGCGGCGTGGACGACGAGAGCTTCCGCGACGGCGCGATGGAGGAGCAGCTCCTCG 256
                       ************************************************************

consensus_11051#0      AGCTGTCCATGCTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCA 777
consensus_11051#1      AGCTGTCCATGNTGGAGGCGAGCGCCGCCGCCGTGACGGAGGACGCCGGCGTGGACGCCA 316
                       *********** ************************************************

consensus_11051#0      AGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCAT 837
consensus_11051#1      AGGCGGAGGAGTTCATCGCCAAATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCAT 376
                       ************************************************************

consensus_11051#0      GGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAAT 897
consensus_11051#1      GGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAGATGATTATTCCTACCCAAT 436
                       ************************************************************

consensus_11051#0      AAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACA 957
consensus_11051#1      AAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACA 496
                       ************************************************************

consensus_11051#0      GAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTAT 1017
consensus_11051#1      GAGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTAT 556
                       ************************************************************

consensus_11051#0      TTTTCTTCCTTGAGCATTGATATTGGTTTGGTTCATTGGTTGCGAATTGATATCTGTACA 1077
consensus_11051#1      TTTTCAAAAAAAAAA--------------------------------------------- 571
                       *****       *                                               

consensus_11051#0      TTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCAGATTCAGGAGGAGGCTTCTT 1137
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      CTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTA 1197
consensus_11051#1      ------------------------------------------------------------
                                                                                   

consensus_11051#0      TCCGCATGGTACACTTGCTTGATTCAATTGTGGT 1231
consensus_11051#1      ----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)