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Oryza sativa
cluster # 11054 cluster # 11054       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11054#0 length = 2169 sequences # 1  
consensus_11054#1 length = 1432 sequences # 6  
consensus_11054#2 length = 531 sequences # 1  

consensusID : consensus_11054#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2169
fasta sequence
                              [AGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGGTGCGTTACGTGCTCCCTCCCCTCCTCGCTCCCTGTCAATTTGATGTGTCGCTGCCGCTGCGCGCTTCTGTTCCTCCGTTGGGATTCGCTCGGCAACTGTTTGTTGAATGCCCTGACGGGGGTTCTCGTGAGTGTATTGGCAACCTGGGATCGTCAGCTGTTCTGTTCATCCATGTATGTATGATGGGGCTCCTTAAAAATTGGAGCGCCTCCTTGCTAGTAGTAAGATTTATTTAGCTGAGATTTTTGGTGGAAAGTGTTGGATGTACGTCGGGTTGCAAAAGAAAGGGGGTCTGGAGAATAATTTAGGAATATAATACTTGGTTAAATCATTTCAAATATGGTATGCAGTCCGCTTTGCTTTGCTATAGTAACCGTAACCAATAGCTGTGTTGCACTGTGTGCTCTGTGCTGCTTTACTTTGAAATACATCTTCTCCTGCTATAGCAACATTGATAAGGTGCTTCCTTTAGTATACGAGATATGGTATTTAGGCTTTTTGATAAGGTGCTTCATTTAGTATACGAGATATGGTATTTAGGCTTTTTGGATGCCGGGTTTTACTTTTCAGTTTTCAGCATAAATTGTACACGTTTAGTTCTTGTATTTTATTCGAGCTACGCTATAGATTTTTGATATTTTGTGATTCCTGCCATTGCAAAGCCAACTCCTAAGATGTTCTGTCAGATTATCCATATTTCTCACTTGTTATGCTCATTCAATTGCCAAGGGAGTTGGCTGTCCAATCTCTTGGTTGATTTTTTTAGACAACGTGAGGCTTGTATTGTAGTTGACATTGGATAATGATCATCACATTAAGCCTTTCTGGCCATTGGGCTTAGCATTAGTCTCCTAATTTACCAGTGTTACAACTCAATGCTTATACCATGATTCTTAATGGAATGATAAACACTGATATATTGTATAGCAGTAATATACTAGTGTACACCCCTGCCCAACCTAAGTTATATCGGGTCAACTGGATGATGGTTTGTTGTTCTGCAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACAAGTAAGTATCCCCAGAATTGTAGGATGCCATTTCCTTCATGATCATTTATGCTATTCTATTATTCATCATGTTTTAGTGTTTTACACTCAGATATAACCCCACTACCTGGCATGTATTGTTAGTCGCACAATATTTAAAAACAAGTCCATATGTTCTACTGCCAAAGGCTGCAATTCAGTGCGTATAAAAAAAAGACGTGGAGAAAAATCTTAGTATGCATAGCATAGATGATAAAGAAATGGTAAGGACAGAACATTAGATGTTCTAGTGGAGGATGCATTTAAAGAACTGACTGAAAAGCTAAGCTGATTGAATTACAGGAGAATAGCAGAAGTCAAAGAGAAGGAAAGGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCG]

[+] EMBL AK068754             [AGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGGTGCGTTACGTGCTCCCTCCCCTCCTCGCTCCCTGTCAATTTGATGTGTCGCTGCCGCTGCGCGCTTCTGTTCCTCCGTTGGGATTCGCTCGGCAACTGTTTGTTGAATGCCCTGACGGGGGTTCTCGTGAGTGTATTGGCAACCTGGGATCGTCAGCTGTTCTGTTCATCCATGTATGTATGATGGGGCTCCTTAAAAATTGGAGCGCCTCCTTGCTAGTAGTAAGATTTATTTAGCTGAGATTTTTGGTGGAAAGTGTTGGATGTACGTCGGGTTGCAAAAGAAAGGGGGTCTGGAGAATAATTTAGGAATATAATACTTGGTTAAATCATTTCAAATATGGTATGCAGTCCGCTTTGCTTTGCTATAGTAACCGTAACCAATAGCTGTGTTGCACTGTGTGCTCTGTGCTGCTTTACTTTGAAATACATCTTCTCCTGCTATAGCAACATTGATAAGGTGCTTCCTTTAGTATACGAGATATGGTATTTAGGCTTTTTGATAAGGTGCTTCATTTAGTATACGAGATATGGTATTTAGGCTTTTTGGATGCCGGGTTTTACTTTTCAGTTTTCAGCATAAATTGTACACGTTTAGTTCTTGTATTTTATTCGAGCTACGCTATAGATTTTTGATATTTTGTGATTCCTGCCATTGCAAAGCCAACTCCTAAGATGTTCTGTCAGATTATCCATATTTCTCACTTGTTATGCTCATTCAATTGCCAAGGGAGTTGGCTGTCCAATCTCTTGGTTGATTTTTTTAGACAACGTGAGGCTTGTATTGTAGTTGACATTGGATAATGATCATCACATTAAGCCTTTCTGGCCATTGGGCTTAGCATTAGTCTCCTAATTTACCAGTGTTACAACTCAATGCTTATACCATGATTCTTAATGGAATGATAAACACTGATATATTGTATAGCAGTAATATACTAGTGTACACCCCTGCCCAACCTAAGTTATATCGGGTCAACTGGATGATGGTTTGTTGTTCTGCAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACAAGTAAGTATCCCCAGAATTGTAGGATGCCATTTCCTTCATGATCATTTATGCTATTCTATTATTCATCATGTTTTAGTGTTTTACACTCAGATATAACCCCACTACCTGGCATGTATTGTTAGTCGCACAATATTTAAAAACAAGTCCATATGTTCTACTGCCAAAGGCTGCAATTCAGTGCGTATAAAAAAAAGACGTGGAGAAAAATCTTAGTATGCATAGCATAGATGATAAAGAAATGGTAAGGACAGAACATTAGATGTTCTAGTGGAGGATGCATTTAAAGAACTGACTGAAAAGCTAAGCTGATTGAATTACAGGAGAATAGCAGAAGTCAAAGAGAAGGAAAGGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCG]


>consensus_11054#0 AGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCT CGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCT CCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGC CGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGGTGCGTTACGTGCTCCCTCCCC TCCTCGCTCCCTGTCAATTTGATGTGTCGCTGCCGCTGCGCGCTTCTGTTCCTCCGTTGG GATTCGCTCGGCAACTGTTTGTTGAATGCCCTGACGGGGGTTCTCGTGAGTGTATTGGCA ACCTGGGATCGTCAGCTGTTCTGTTCATCCATGTATGTATGATGGGGCTCCTTAAAAATT GGAGCGCCTCCTTGCTAGTAGTAAGATTTATTTAGCTGAGATTTTTGGTGGAAAGTGTTG GATGTACGTCGGGTTGCAAAAGAAAGGGGGTCTGGAGAATAATTTAGGAATATAATACTT GGTTAAATCATTTCAAATATGGTATGCAGTCCGCTTTGCTTTGCTATAGTAACCGTAACC AATAGCTGTGTTGCACTGTGTGCTCTGTGCTGCTTTACTTTGAAATACATCTTCTCCTGC TATAGCAACATTGATAAGGTGCTTCCTTTAGTATACGAGATATGGTATTTAGGCTTTTTG ATAAGGTGCTTCATTTAGTATACGAGATATGGTATTTAGGCTTTTTGGATGCCGGGTTTT ACTTTTCAGTTTTCAGCATAAATTGTACACGTTTAGTTCTTGTATTTTATTCGAGCTACG CTATAGATTTTTGATATTTTGTGATTCCTGCCATTGCAAAGCCAACTCCTAAGATGTTCT GTCAGATTATCCATATTTCTCACTTGTTATGCTCATTCAATTGCCAAGGGAGTTGGCTGT CCAATCTCTTGGTTGATTTTTTTAGACAACGTGAGGCTTGTATTGTAGTTGACATTGGAT AATGATCATCACATTAAGCCTTTCTGGCCATTGGGCTTAGCATTAGTCTCCTAATTTACC AGTGTTACAACTCAATGCTTATACCATGATTCTTAATGGAATGATAAACACTGATATATT GTATAGCAGTAATATACTAGTGTACACCCCTGCCCAACCTAAGTTATATCGGGTCAACTG GATGATGGTTTGTTGTTCTGCAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCC TAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATG GCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGA TACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTC AATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACA AGTAAGTATCCCCAGAATTGTAGGATGCCATTTCCTTCATGATCATTTATGCTATTCTAT TATTCATCATGTTTTAGTGTTTTACACTCAGATATAACCCCACTACCTGGCATGTATTGT TAGTCGCACAATATTTAAAAACAAGTCCATATGTTCTACTGCCAAAGGCTGCAATTCAGT GCGTATAAAAAAAAGACGTGGAGAAAAATCTTAGTATGCATAGCATAGATGATAAAGAAA TGGTAAGGACAGAACATTAGATGTTCTAGTGGAGGATGCATTTAAAGAACTGACTGAAAA GCTAAGCTGATTGAATTACAGGAGAATAGCAGAAGTCAAAGAGAAGGAAAGGCAGAACAC CTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAAT GACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCA AGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCT CAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAA CTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGT AGATGAGCG



consensusID : consensus_11054#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1432
fasta sequence
                              [CTGACGTCACACTAGCAGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACAAGAGAATAGCAGAAGTCAAAGAGAAGGAAAGGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATCCTAAGCAACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCAAATTACACCTGATGGGG--AGGAGATCGATTTGGATGATGAAGAATCAAATCCAAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTACTATCAGATCAAAAGAGGCCGTCTCACTGATAGAGAAGCAAACACAGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCAAAGGATGGTCAAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAAATACCATTTTGTTAACAGTTAATCGTGTATTCGTT-AATCTGGAAATGATTTGTGTACACTGGATAGGATAGGATCCAGCTCTGATATGCTTTCAGTATGAGCGATGAGCGAAGCCGCAACAGCCATGGAGCATAAATCAAATC]

[+] EMBL CB685642             [CTGACGTCACACTAGCAGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACAAGAGAATAGCAGAAGTCAAAGAGAAGGAAAGGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK067781             [               CAGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACAAGAGAATAGCAGAAGTCAAAGAGAAGGAAAGGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATCCTAAGCAACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCAAATTACACCTGATGGGG  AGGAGATCGATTTGGATGATGAAGAATCAAATCCAAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTACTATCAGATCAAAAGAGGCCGTCTCACTGATAGAGAAGCAAACACAGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCAAAGGATGGTCAAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAAATACCATTTTGTTAACAGTTAATCGTGTATTCGTT AATCTGGAAATGATTTGTGTACACTGGATAGGATAGGATCCAGCTCTGATATGCTTTCAGTATGAGCGATGAGCGAAGCCGCAACAGCCATGGAGCATAAATCAAATC]
[-] EMBL CB685643             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAGTCAAAGAGAAGGAAAGGCAGAACACC TGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATCCTAAGCAACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCAAATTACACCTGATGGGG  AGGAGATCGATTTGGATGATGAAGAATCAAATCCAAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTACTATCAGATCAAAAGAGGCCGTCTCACTGATAGAGAAGCAAACACAGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCAAAGGATGGTCAAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAAATACCATTTTGTTAACAGTTAATCGTGTATTCGTT AATCTGGAAATGATTTGTG                                                                                         ]
[+] EMBL CF311973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTACTGTTGGATTATTTATAAGTTCATGGAGAATGACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATCCTAAGCAACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCAAATTACACCTGATGGGGNAAGGAGATCGATTTGGATGATGAAGAATCAAATCCAAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTAC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA753101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATCCTAAGCAACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCAAATTACCCCTGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF311974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTGCAAATTACACCTGATGGGG  AGGAGATCGATTTGGATGATGAAGAATCAAATCCCAACAAGTTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTACTATCAGATCAAAAGAGGCCGTCTCACTGATAGAGAAGCAAACACAGGCGTTGTTTGGACGGCCAAATATTAAAGTTTTAGATGATGGCTCTGTCAATGCAAAGGATGGTCAAATGATAACAATAACTTTCATAGAACTCACCCCTCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAAAGTCATGTAGAATCCAAATACCATTTTGTTAACAGTTAATCGTGTATTCGTTGTATCTGGAAATGATTTGTGTACACTGGATAGGATA                                                                         ]


>consensus_11054#1 CTGACGTCACACTAGCAGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACC CGCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTG CTCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCC TGCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGAGCTTT CTTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTG AAGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTT GAAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCT GCAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAA GCCTCGAAAGTTCCCCAGGACCTCCTTTACAAGAGAATAGCAGAAGTCAAAGAGAAGGAA AGGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAAT GACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCA TTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATA CAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTT GAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTC CTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAAT CCTAAGCAACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCA TTGGTGCAAATTACACCTGATGGGGAGGAGATCGATTTGGATGATGAAGAATCAAATCCA AACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCAAAGGTATGCTACT ATCAGATCAAAAGAGGCCGTCTCACTGATAGAGAAGCAAACACAGGCGTTGTTTGGACGG CCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCAAAGGATGGTCAAATGATAACA ATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTG TGGGAAGCTGAGAGTCATGTAGAATCCAAATACCATTTTGTTAACAGTTAATCGTGTATT CGTTAATCTGGAAATGATTTGTGTACACTGGATAGGATAGGATCCAGCTCTGATATGCTT TCAGTATGAGCGATGAGCGAAGCCGCAACAGCCATGGAGCATAAATCAAATC



consensusID : consensus_11054#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence
                              [CCGCGGACGCGTGGGTGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCCAATCCTAAGCCACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCACAATTACACCTGATGGGGAGGAGATCGATTTGGATGATGAAGAATCAAATCCCAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCANAAGGTATGCTACTATCAGATCCAAAGAGGCCGTCTCACTGATAGAGAAGCACAACACCACGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCCAAGGATGGTCACAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAATACCATTTTGTTAACAGTTAATTGTGTATTCGTTAATCTGGAAAAAAAAAA]

[+] EMBL BQ907718             [CCGCGGACGCGTGGGTGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCCAATCCTAAGCCACAGATAGTACTTGAAAACCTGAAGCCTAATCCATTCTGGGATATGGAATCATTGGTGCACAATTACACCTGATGGGGAGGAGATCGATTTGGATGATGAAGAATCAAATCCCAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGCTGATACGTTGCANAAGGTATGCTACTATCAGATCCAAAGAGGCCGTCTCACTGATAGAGAAGCACAACACCACGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCCAAGGATGGTCACAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAATACCATTTTGTTAACAGTTAATTGTGTATTCGTTAATCTGGAAAAAAAAAA]


>consensus_11054#2 CCGCGGACGCGTGGGTGGCTACTTCCTAAAGAGGGTAGATGAGCGATTCCAACTCGAGAA GAACATGAAGACTCTCCCGCCCAATCCTAAGCCACAGATAGTACTTGAAAACCTGAAGCC TAATCCATTCTGGGATATGGAATCATTGGTGCACAATTACACCTGATGGGGAGGAGATCG ATTTGGATGATGAAGAATCAAATCCCAACAAGCTGAGGTCCTATGTTTCACGCTTGGATG CTGATACGTTGCANAAGGTATGCTACTATCAGATCCAAAGAGGCCGTCTCACTGATAGAG AAGCACAACACCACGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCT GTCAATGCCAAGGATGGTCACAATGATAACAATAACTTTCATAGAACTCACCCATCTTGT TTTGGAGGCAGCTGCTTTTGGATCCTTTTTGTGGGAAGCTGAGAGTCATGTAGAATCCAA TACCATTTTGTTAACAGTTAATTGTGTATTCGTTAATCTGGAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      AGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCCGCCTCCTCCTCCTCT 60
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      CGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGCTCCGCGCCTCCTCCT 120
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      CCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCTGCTGCCTCGCCAGGC 180
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      CGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGGTGCGTTACGTGCTCCCTCCCC 240
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      TCCTCGCTCCCTGTCAATTTGATGTGTCGCTGCCGCTGCGCGCTTCTGTTCCTCCGTTGG 300
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GATTCGCTCGGCAACTGTTTGTTGAATGCCCTGACGGGGGTTCTCGTGAGTGTATTGGCA 360
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      ACCTGGGATCGTCAGCTGTTCTGTTCATCCATGTATGTATGATGGGGCTCCTTAAAAATT 420
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GGAGCGCCTCCTTGCTAGTAGTAAGATTTATTTAGCTGAGATTTTTGGTGGAAAGTGTTG 480
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GATGTACGTCGGGTTGCAAAAGAAAGGGGGTCTGGAGAATAATTTAGGAATATAATACTT 540
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GGTTAAATCATTTCAAATATGGTATGCAGTCCGCTTTGCTTTGCTATAGTAACCGTAACC 600
                                                                                   

consensus_11054#1      ------------------------------------------------------------
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      AATAGCTGTGTTGCACTGTGTGCTCTGTGCTGCTTTACTTTGAAATACATCTTCTCCTGC 660
                                                                                   

consensus_11054#1      -----------------------------------------------------------C 1
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      TATAGCAACATTGATAAGGTGCTTCCTTTAGTATACGAGATATGGTATTTAGGCTTTTTG 720
                                                                                   

consensus_11054#1      TGACGTCACACTAGCAGCGAAGCCCAAGCAGCCGACGGAATCCCGAATCCCCACCCACCC 61
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      ATAAGGTGCTTCATTTAGTATACGAGATATGGTATTTAGGCTTTTTGGATGCCGGGTTTT 780
                                                                                   

consensus_11054#1      GCCTCCTCCTCCTCTCGTCCGCCCCTCCTCCGATGGCGGCGTGGGCTGACGCCGCGCTGC 121
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      ACTTTTCAGTTTTCAGCATAAATTGTACACGTTTAGTTCTTGTATTTTATTCGAGCTACG 840
                                                                                   

consensus_11054#1      TCCGCGCCTCCTCCTCCCCCGCCTCCGCCACCGCCGCCGCGTCCTCCTCCTCCTCGTCCT 181
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      CTATAGATTTTTGATATTTTGTGATTCCTGCCATTGCAAAGCCAACTCCTAAGATGTTCT 900
                                                                                   

consensus_11054#1      GCTGCCTCGCCAGGCCGCGCGCATCCCTGGAGTCCAGGCTACACCGCCGCAAGAGCTTTC 241
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GTCAGATTATCCATATTTCTCACTTGTTATGCTCATTCAATTGCCAAGGGAGTTGGCTGT 960
                                                                                   

consensus_11054#1      TTTATACCAGTAGCCCCAAATCTGGTTTCCTAATTAATAGTTGTCGAGCAAGGAGCTTGA 301
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      CCAATCTCTTGGTTGATTTTTTTAGACAACGTGAGGCTTGTATTGTAGTTGACATTGGAT 1020
                                                                                   

consensus_11054#1      AGGTTAAAGCAAAAATGGATTCTGGTGATGGCCTTACAAGACTTGCTCCACTTATGTTTG 361
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      AATGATCATCACATTAAGCCTTTCTGGCCATTGGGCTTAGCATTAGTCTCCTAATTTACC 1080
                                                                                   

consensus_11054#1      AAACTCCAAGCGGTCAACTTCTGGTCCAGATACTCCAATCACACCCTCACCTACTTCCTG 421
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      AGTGTTACAACTCAATGCTTATACCATGATTCTTAATGGAATGATAAACACTGATATATT 1140
                                                                                   

consensus_11054#1      CAACAGTTGACCAGCAACTTGAAAACCTTCAATCAGAGAAAGATGCTCAAGAGAAAGAAG 481
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GTATAGCAGTAATATACTAGTGTACACCCCTGCCCAACCTAAGTTATATCGGGTCAACTG 1200
                                                                                   

consensus_11054#1      CCTCGAAAGTTCCCCAGGACCTCCTTTACAAGAGAATAGCAGAAGTCAAAGAGAAGGAAA 541
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GATGATGGTTTGTTGTTCTGCAGAGCTTTCTTTATACCAGTAGCCCCAAATCTGGTTTCC 1260
                                                                                   

consensus_11054#1      GGCAGAACACCTTGGAAGAGATCATCTACTGTTGGATTATTTATAAGTTCATGGAGAATG 601
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      TAATTAATAGTTGTCGAGCAAGGAGCTTGAAGGTTAAAGCAAAAATGGATTCTGGTGATG 1320
                                                                                   

consensus_11054#1      ACATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTACGTGACATCTCCTCAT 661
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      GCCTTACAAGACTTGCTCCACTTATGTTTGAAACTCCAAGCGGTCAACTTCTGGTCCAGA 1380
                                                                                   

consensus_11054#1      TGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTGAGATGATAC 721
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      TACTCCAATCACACCCTCACCTACTTCCTGCAACAGTTGACCAGCAACTTGAAAACCTTC 1440
                                                                                   

consensus_11054#1      AAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATACAGTTGTTG 781
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      AATCAGAGAAAGATGCTCAAGAGAAAGAAGCCTCGAAAGTTCCCCAGGACCTCCTTTACA 1500
                                                                                   

consensus_11054#1      AAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATGGCTACTTCC 841
consensus_11054#2      ---------------------------------CCGCGGACG-CGTGGGTGGCTACTTCC 26
consensus_11054#0      AGTAAGTATCCCCAGAATTGTAGGATGCCATTTCCTTCATGATCATTTATGCTATTCTAT 1560
                                                        *         * *   **      *  

consensus_11054#1      TAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCAAATC 901
consensus_11054#2      TAAAGAGGGTAGATGAGCGATTCCAACTCGAGAAGAACATGAAGACTCTCCCGCCCAATC 86
consensus_11054#0      TATTCATCATGTTTTAGTGTTTTACACTCAGATATAACCCCACTAC-CTGGCATGTATTG 1619
                       **   *   *   * ** * **   ****    * ***   *  ** **  *    * * 

consensus_11054#1      CTAAGCAACAGATAGTACTTGAAAACCTGAA-GCCTAATCCATT-CTGGGATATGGAATC 959
consensus_11054#2      CTAAGCCACAGATAGTACTTGAAAACCTGAA-GCCTAATCCATT-CTGGGATATGGAATC 144
consensus_11054#0      TTA-GTCGCA--CAATATTTAAAAACAAGTCCATATGTTCTACTGCCAAAGGCTGCAAT- 1675
                        ** *   **   * ** ** *****  *      *  ** * * *       ** *** 

consensus_11054#1      ATTGGTGCA-AATTACACCTGATGGGGAGGAGA---TCGATTTGGATGATGAAGA----- 1010
consensus_11054#2      ATTGGTGCACAATTACACCTGATGGGGAGGAGA---TCGATTTGGATGATGAAGA----- 196
consensus_11054#0      -TCAGTGCGTATAAAAAAAAGACGTGGAGAAAAATCTTAGTATGCATAGCATAGATGATA 1734
                        *  ****  *   * *   ** * **** * *   *   * ** **     ***     

consensus_11054#1      ATCAAATCCAAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGC---TGATACGTTGC- 1066
consensus_11054#2      ATCAAATCCCAACAAGCTGAGGTCCTATGTTTCACGCTTGGATGC---TGATACGTTGC- 252
consensus_11054#0      AAGAAATGGTAAGGACAGAACATTAGATGTTCTAGTGGAGGATGCATTTAAAGAACTGAC 1794
                       *  ****   **  *    *  *   *****  *     ******   * *     **  

consensus_11054#1      --AAA-GGTATGCTACTATCAGATCAAAAGAGGCCGTCTCACTGATAGAGAAGCA-AACA 1122
consensus_11054#2      --ANAAGGTATGCTACTATCAGATCCAAAGAGGCCGTCTCACTGATAGAGAAGCACAACA 310
consensus_11054#0      TGAAAAGCTAAGCTGAT-TGAATTACAGGAGAATAGCAGAAGTCAAAGAGAAGGA-AAGG 1852
                         * * * ** ***  * * *  *  *        *    * * * ******* * **  

consensus_11054#1      CA--GGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCAA 1180
consensus_11054#2      CCACGGCGTTGTTTGGACGGCCAGATATTAAAGTCTTAGATGATGGCTCTGTCAATGCCA 370
consensus_11054#0      C---AGAACACCTTGGAAG---AGATCATCTACTGTTGGATTATTTATAAGTTCATG--G 1904
                       *    *      ***** *   ****  *  * * ** *** **   *  **  ***   

consensus_11054#1      AGGATGGTCA-AATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCA 1239
consensus_11054#2      AGGATGGTCACAATGATAACAATAACTTTCATAGAACTCACCCATCTTGTTTTGGAGGCA 430
consensus_11054#0      AGAATGA-CATATCAATGACACCTGCATTAGCACCATTAGGTGGCCCTGTAC--GTGACA 1961
                       ** ***  ** *   ** ***    * **   *  * *       * ***    * * **

consensus_11054#1      GCTGCTTTTGGATCCTTTTTGTGGG-AAGCTGAGAGTCATGTAGAATCCAAATACCATTT 1298
consensus_11054#2      GCTGCTTTTGGATCCTTTTTGTGGG-AAGCTGAGAGTCATGTAGAATCCAA-TACCATTT 488
consensus_11054#0      TCTCCTCATTGCCTAACCAAGAGGATAGGTTGCAAAGCATACATTCCCCGGACGCTCTTG 2021
                        ** **  * *         * **  * * **  *  ***  *    **     *  ** 

consensus_11054#1      TGTTAACAGTTAATCGTGTATTCGTTAATCTGGAAATGATTTGTGTACACTGGATAGGAT 1358
consensus_11054#2      TGTTAACAGTTAATTGTGTATTCGTTAATCTGGAAAAAAAAAA----------------- 531
consensus_11054#0      AGATGATACAAAATCATCTCAACCTTATAATGGGTGAAAAGGTAGCAGCCCCACTAGATA 2081
                        * * * *   ***  * *   * ***   ***     *                     

consensus_11054#1      AGGATCCAGCTCTGATATGCTTTCAGTATGAGCGATGAGCGAAGCCGCAACAGCCATGGA 1418
consensus_11054#2      ------------------------------------------------------------
consensus_11054#0      CAGTTGTTGAAATCAGCAACTTAAATCTGGGAAAGCTTTATGCAGCATCCATCATGTATG 2141
                                                                                   

consensus_11054#1      GCATAAATCAAATC-------------- 1432
consensus_11054#2      ----------------------------
consensus_11054#0      GCTACTTCCTAAAGAGGGTAGATGAGCG 2169
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)