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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1903 fasta sequence
[CAACGCAGCACACGCAAGAGGAGTCGTGGGAGTCCAGGAGAGGAGGCGGAGGCGCGGAGGAGAGAGGAGGAGGAGGAGGAGGTGGTTGGTCTCCGCCATGGCGAGCTCGTCGTCCGACCCCGACAAGCTCATGTCCAAGGCCGACAAGCTAACAAAATTGAGCTTCACGAGATGGAATGCCGATTGGAAGAGTGCTACCTCCTTGTATGAGCAAGCTGCTATTGCTTATAGGTTCAAAAAGGAGAATGAGAAAGCAAAGGATGCCTTTGAGAAGGCTTCAAAAGGACAGGAAATGATTTCTTCACCCTGGGATGCTGCTAAACACATGGAATCTGCTGGTGCTTTAGCGAAAGAGCTTGGACGCTGGAATGAAGTTTCAGATTTTTATCGCAGAGCATCAGAATTCTATCGTGAATGTGGAAGAGCACAACCTGCCTCTGATGCTCTTGCAAAGGGTGCCAGTTTCTTGGAGGATAACACTCCAGACGAAGCAATAAAAATGTATGATGAGGCCTGTTCAATTCTAGAAGAGGATGGAAAGGAACAGATGGCTTTCGATTTGTATCGTGCTGCTGCAAGTTTATATGTCAAGCTCGAGAAGTATTCAGATGCTGCAGCAACTTTTCTAAGACTTGGTTCAGCTGCTGATAAGTGTAATGCCATCAACAGCCAGTGCAAGGGCTATTTGAGTGCAATCATCATCTACCTTTATGCCCATGATTTTCAACAAGCTCAGAAATGTTACAATGACTGCTCAGAGGTTCAAGCCTTCCTTAACAGTGACCAGAATCGATGTGCAATGAAACTGCTGTCTGCTTATGAGGAAGGTGATGCTGAAGGAATCAAACAGGCTGCACAATCAAGTGCCATCAAACA-CCT-TGACCATGTGGTAATTCGACTTGCAAAGA-AA-CTA-CCTA-CGGGTGATCTGCAGACCA-TCAAGAAATTGGCAGA-CGATGA-CGGCGAGGA-TTCTTTGGACGAGAATGACCTAACTTAATACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCGTTG-A-TGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTTCTGCACATATACATCCTACATTGTTTGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGAAAAAAAAAAAAAAAAAAAAAAAAAACCTTGGGGGGGGGGCCGGGCCCCAATTCCCCCTTTTAGGGAAGTTTTTAACCGCCCCCCCGGGGCCGGCTTTAAAAAAGGTGGAAAGGGGAAAACCCCGGGTTTCCCCAATTTTATTTTTTTCGAAAAACTCCCCTTTTTCCCCTTTGGGTTAAAATAAAAAAAGGCCCCCCCTATCGCCCTTTCCCACTGTTTCCCATCCTAAATGGGCAAGGGGACCCCCCCCTTTCCCGGTCTTTAAGGCGGAGGGGGGGGGGGTTTAACACCCAAAGCCCCCTTTTCTTTTACAAACCCCTGGCCCCCCTTCTTTTTTCTTTACCACCCTTCCTATTACCCCCCGCTCCCGCGTTTCCCCCCTTAATCTTTTATATAGGGGGCCTCTTTTCGGGGTTTCCAATTTGGCGTTGACGGCGCCCCCGTTCCCCATAAACCTCTTATTGGGGTGGGGACCTCTGCATACGGCCCCTTTTATCNGTATTCCGTATAATCCGGCTCTGCCACTACGCCGGCACTTAGTTGAAATCTCGGTCTCTTTTGCCTGCTCTTTAACCTACTCCCACATCATGATGCTTGCCTCCTGTATTANACA]
[+] EMBL AK103625 [CAACGCAGCACACGCAAGAGGAGTCGTGGGAGTCCAGGAGAGGAGGCGGAGGCGCGGAGGAGAGAGGAGGAGGAGGAGGAGGTGGTTGGTCTCCGCCATGGCGAGCTCGTCGTCCGACCCCGACAAGCTCATGTCCAAGGCCGACAAGCTAACAAAATTGAGCTTCACGAGATGGAATGCCGATTGGAAGAGTGCTACCTCCTTGTATGAGCAAGCTGCTATTGCTTATAGGTTCAAAAAGGAGAATGAGAAAGCAAAGGATGCCTTTGAGAAGGCTTCAAAAGGACAGGAAATGATTTCTTCACCCTGGGATGCTGCTAAACACATGGAATCTGCTGGTGCTTTAGCGAAAGAGCTTGGACGCTGGAATGAAGTTTCAGATTTTTATCGCAGAGCATCAGAATTCTATCGTGAATGTGGAAGAGCACAACCTGCCTCTGATGCTCTTGCAAAGGGTGCCAGTTTCTTGGAGGATAACACTCCAGACGAAGCAATAAAAATGTATGATGAGGCCTGTTCAATTCTAGAAGAGGATGGAAAGGAACAGATGGCTTTCGATTTGTATCGTGCTGCTGCAAGTTTATATGTCAAGCTCGAGAAGTATTCAGATGCTGCAGCAACTTTTCTAAGACTTGGTTCAGCTGCTGATAAGTGTAATGCCATCAACAGCCAGTGCAAGGGCTATTTGAGTGCAATCATCATCTACCTTTATGCCCATGATTTTCAACAAGCTCAGAAATGTTACAATGACTGCTCAGAGGTTCAAGCCTTCCTTAACAGTGACCAGAATCGATGTGCAATGAAACTGCTGTCTGCTTATGAGGAAGGTGATGCTGAAGGAATCAAACAGGCTGCACAATCAAGTGCCATCAAACA CCT TGACCATGTGGTAATTCGACTTGCAAAGA AA CTA CCTA CGGGTGATCTGCAGACCA TCAAGAAATTGGCAGA CGATGA CGGCGAGGA TTCTTTGGACGAGAATGACCTAACTTAATACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCGTTG A TGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCT ]
[+] EMBL OSS0805A [ CGGAGGAGAGAGGAGGAGGAGGAGGAGGTGGTTGGTCTCCGCCATGGCGAGCTCGTCGTCCGACCCCGACAAGCTCATGTCCAAGGCCGACAAGCTAACAAAATTGAGCTTCACGAGATGGAATGCCGATTGGAAGAGTGCTACCTCCTTGTATGAGCAAGCTGCTATTGCTTATAGGTTCAAAAAGGAGAATGAGAAAGCAAAGGATGCCTTTGAGAAGGCTTCAAAAGGACAGG ]
[-] EMBL CK085313 [ TTGGTTCAGCTGCTGATAAGTGTAATGCCATCAACAGCCAGTGCAAGGGCTATTTGAGTGCAATCATCATCTGCCTTTATGCCCATGATTTTCAACAAGCTCAGAAATGTTACAATGACTGCTCAGAGGTTCAAGCCTTCCTTAACAGTGACCAGAATCGATGTGCAATGAAACTGCTGTCTGCTTATGAGGAAGGTGATGCTGAAGGAATCAAACAGGCTGCACAATCAAGTGCCATCAAACA CCT TGACCATGTGGTAATTCGACTTGCAAAGA AA CTA CCTA CGGGTGATCTGCAGACCA TCAAGAAATTGGCAGA CGATGA CGGCGAGGA TTCTTTGGACGAGAATGACCTAACTTAATACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCGTTG A TGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTTCTGCACATATACATCCTACATTGTT ]
[-] EMBL CF337618 [ TGAGTGCAATCATCATCTACCTTTATGCCCATGATTTTCAACAAGCTCAGAAATTTTACAATGACTGCTCAGAGGTTCAAGCCTTCCTTAACAGTGACCAGAATCGATGTGCAATGAAACTGCTGTCTGCTTATGAGGAATGTGATGCTGAAGGAATCAAACAGGCTGCACAATCAAGTGCCATCAAACA CCT TGACCATGTGGTAATTCGACTTGCAAAGA AA CTA CCTA CGGGTGATCTGCAGACCA TCAAGAAATTGGCAGA CGATGA CGGCGAGGA TTCTTTGGACGAGAATGACCTAACTTAATACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCGTTG A TGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTTCTGCACATATACATCCTACATTGTTTGGTTTGTTAAAAAAAA ]
[+] EMBL AU174157 [ CAGAATCGATGTGCAATGAAACTGCTGTCTGCTTATGAGGAAGGTGATGCTGAAGGAATCAAACAGGCTGCACAATCAAGTGCCATCAAACA CCT TGACCATGTGGTAATTCGACTTGCAAAGA AA CTA CCTA CGGGTGATCTGCAGACCA TCAAGAAATTGGCAGA CGATGA CGGCGAGGA TTCTTTGGACGAGAATGACCTAACTTAATACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCGTTG A TGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTTCTGCACATATACATCCTACATTGTTTGGTTTGTTAAAAA ]
[+] EMBL BI805479 [ AACACCCTGTGACCATGTGGTAATTCGACTTGCAAAGATAATCTACCCTACCGGGTGATCTGCAGACCATTCAAGAAATTTGCAGACCGATGACCGGCGAGGATTTCTTTGGACGAGAATGACCTAACTTAATACC AACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCCTTGCACNGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTAC AAGTACAAACTTGTGTGA GCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTTCTGCACATATACATCCTACATTGTTTGNTTTGTAAAAAAAAAA ]
[+] EMBL CA758153 [ CAAATATTTGAGGTTGACTCATGTTACCGTTG A TGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTACACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTTCTGCACATATACATCCTACATTGTTTGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGAAAAAAAAAAAAAAAAAAAAAAAAAACCTTGGGGGGGGGGCCGGGCCCCAATTCCCCCTTTTAGGGAAGTTTTTAACCGCCCCCCCGGGGCCGGCTTTAAAAAAGGTGGAAAGGGGAAAACCCCGGGTTTCCCCAATTTTATTTTTTTCGAAAAACTCCCCTTTTTCCCCTTTGGGTTAAAATAAAAAAAGGCCCCCCCTATCGCCCTTTCCCACTGTTTCCCATCCTAAATGGGCAAGGGGACCCCCCCCTTTCCCGGTCTTTAAGGCGGAGGGGGGGGGGGTTTAACACCCAAAGCCCCCTTTTCTTTTACAAACCCCTGGCCCCCCTTCTTTTTTCTTTACCACCCTTCCTATTACCCCCCGCTCCCGCGTTTCCCCCCTTAATCTTTTATATAGGGGGCCTCTTTTCGGGGTTTCCAATTTGGCGTTGACGGCGCCCCCGTTCCCCATAAACCTCTTATTGGGGTGGGGACCTCTGCATACGGCCCCTTTTATCNGTATTCCGTATAATCCGGCTCTGCCACTACGCCGGCACTTAGTTGAAATCTCGGTCTCTTTTGCCTGCTCTTTAACCTACTCCCACATCATGATGCTTGCCTCCTGTATTANACA]
consensusID : consensus_11058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[ATGAAACTGCTGGTCTGCTTATGAGGAAGGTTGATTGTCTGAAGGAATGCTAACATGCTGCACATATCAAGTGCCATCTACCCTTGACCATGTGGTAATTCGACTTGCAAATGATAATCTACCTACGGGTGATCTGCAGACCATCATAGAAATTGGCAGACGATGAGCGGCGAGGATTCTTTGGGACGAGAATGACCTGAACTTGAATGACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATGTTGAGGTTGACTCATGTTACCGTTGATGAACATGAGCGATTTGTGAAAAAGAAGATGATGCGATGGTACCGGTACAAGTACAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCACTGTCAGATCNGATTGCTGCACATATACATCCTACTTGTTTGGTTTGTTAA]
[+] EMBL BI805203 [ATGAAACTGCTGGTCTGCTTATGAGGAAGGTTGATTGTCTGAAGGAATGCTAACATGCTGCACATATCAAGTGCCATCTACCCTTGACCATGTGGTAATTCGACTTGCAAATGATAATCTACCTACGGGTGATCTGCAGACCATCATAGAAATTGGCAGACGATGAGCGGCGAGGATTCTTTGGGACGAGAATGACCTGAACTTGAATGACCAAACTACCCGTACCGGGAGACGCTGAGAAAGCAAATATGTTGAGGTTGACTCATGTTACCGTTGATGAACATGAGCGATTTGTGAAAAAGAAGATGATGCGATGGTACCGGTACAAGTACAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCACTGTCAGATCNGATTGCTGCACATATACATCCTACTTGTTTGGTTTGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11058#0 CAACGCAGCACACGCAAGAGGAGTCGTGGGAGTCCAGGAGAGGAGGCGGAGGCGCGGAGG 60
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 AGAGAGGAGGAGGAGGAGGAGGTGGTTGGTCTCCGCCATGGCGAGCTCGTCGTCCGACCC 120
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CGACAAGCTCATGTCCAAGGCCGACAAGCTAACAAAATTGAGCTTCACGAGATGGAATGC 180
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CGATTGGAAGAGTGCTACCTCCTTGTATGAGCAAGCTGCTATTGCTTATAGGTTCAAAAA 240
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 GGAGAATGAGAAAGCAAAGGATGCCTTTGAGAAGGCTTCAAAAGGACAGGAAATGATTTC 300
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TTCACCCTGGGATGCTGCTAAACACATGGAATCTGCTGGTGCTTTAGCGAAAGAGCTTGG 360
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 ACGCTGGAATGAAGTTTCAGATTTTTATCGCAGAGCATCAGAATTCTATCGTGAATGTGG 420
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 AAGAGCACAACCTGCCTCTGATGCTCTTGCAAAGGGTGCCAGTTTCTTGGAGGATAACAC 480
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TCCAGACGAAGCAATAAAAATGTATGATGAGGCCTGTTCAATTCTAGAAGAGGATGGAAA 540
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 GGAACAGATGGCTTTCGATTTGTATCGTGCTGCTGCAAGTTTATATGTCAAGCTCGAGAA 600
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 GTATTCAGATGCTGCAGCAACTTTTCTAAGACTTGGTTCAGCTGCTGATAAGTGTAATGC 660
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CATCAACAGCCAGTGCAAGGGCTATTTGAGTGCAATCATCATCTACCTTTATGCCCATGA 720
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TTTTCAACAAGCTCAGAAATGTTACAATGACTGCTCAGAGGTTCAAGCCTTCCTTAACAG 780
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TGACCAGAATCGATGTGCAATGAAACTGCTG-TCTGCTTATGAGGAAGGT-GATG--CTG 836
consensus_11058#1 -------------------ATGAAACTGCTGGTCTGCTTATGAGGAAGGTTGATTGTCTG 41
************ ****************** *** ***
consensus_11058#0 AAGGAAT-CAAACAGGCTGCACA-ATCAAGTGCCATCAAACACCTTGACCATGTGGTAAT 894
consensus_11058#1 AAGGAATGCTAACATGCTGCACATATCAAGTGCCATCTAC--CCTTGACCATGTGGTAAT 99
******* * **** ******** ************* * ******************
consensus_11058#0 TCGACTTGCAAAG---AAACTACCTACGGGTGATCTGCAGACCATCA-AGAAATTGGCAG 950
consensus_11058#1 TCGACTTGCAAATGATAATCTACCTACGGGTGATCTGCAGACCATCATAGAAATTGGCAG 159
************ ** **************************** ************
consensus_11058#0 ACGATGA-CGGCGAGGATTCTTTGG-ACGAGAATGACCT-AACTTAAT--ACCAAACTAC 1005
consensus_11058#1 ACGATGAGCGGCGAGGATTCTTTGGGACGAGAATGACCTGAACTTGAATGACCAAACTAC 219
******* ***************** ************* ***** * **********
consensus_11058#0 CCGTACCGGGAGACGCTGAGAAAGCAAATAT-TTGAGGTTGACTCATGTTACCGTTGATG 1064
consensus_11058#1 CCGTACCGGGAGACGCTGAGAAAGCAAATATGTTGAGGTTGACTCATGTTACCGTTGATG 279
******************************* ****************************
consensus_11058#0 AACATGAGCGATTTGT-AAAAAGAAGATAT--CGATGTACACGGTACAAAGTACAAACTT 1121
consensus_11058#1 AACATGAGCGATTTGTGAAAAAGAAGATGATGCGATGGTACCGGTACAA-GTACAA-CTT 337
**************** *********** ***** ******** ****** ***
consensus_11058#0 GTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATTT 1181
consensus_11058#1 GTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCA-CTGTCAGATCNGATTG 396
******************************************* ****** *** ****
consensus_11058#0 CTGCACATATACATCCTACATTGTTTGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAA 1241
consensus_11058#1 CTGCACATATACATCCTAC-TTGTTTGGTTTGTTAA------------------------ 431
******************* ****************
consensus_11058#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGAAAAAAAAAAAA 1301
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 AAAAAAAAAAAAAACCTTGGGGGGGGGGCCGGGCCCCAATTCCCCCTTTTAGGGAAGTTT 1361
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TTAACCGCCCCCCCGGGGCCGGCTTTAAAAAAGGTGGAAAGGGGAAAACCCCGGGTTTCC 1421
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CCAATTTTATTTTTTTCGAAAAACTCCCCTTTTTCCCCTTTGGGTTAAAATAAAAAAAGG 1481
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CCCCCCCTATCGCCCTTTCCCACTGTTTCCCATCCTAAATGGGCAAGGGGACCCCCCCCT 1541
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TTCCCGGTCTTTAAGGCGGAGGGGGGGGGGGTTTAACACCCAAAGCCCCCTTTTCTTTTA 1601
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CAAACCCCTGGCCCCCCTTCTTTTTTCTTTACCACCCTTCCTATTACCCCCCGCTCCCGC 1661
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 GTTTCCCCCCTTAATCTTTTATATAGGGGGCCTCTTTTCGGGGTTTCCAATTTGGCGTTG 1721
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 ACGGCGCCCCCGTTCCCCATAAACCTCTTATTGGGGTGGGGACCTCTGCATACGGCCCCT 1781
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 TTTATCNGTATTCCGTATAATCCGGCTCTGCCACTACGCCGGCACTTAGTTGAAATCTCG 1841
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 GTCTCTTTTGCCTGCTCTTTAACCTACTCCCACATCATGATGCTTGCCTCCTGTATTANA 1901
consensus_11058#1 ------------------------------------------------------------
consensus_11058#0 CA 1903
consensus_11058#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||