These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1945 fasta sequence [AAACCACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAAAAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGCTACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACGGTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGCCACTTCTCCGTAGAGTGGTGCAGGAGGAGCTCCAGGCAGGTCTCGTGCGCAGCCCGCGTTACATCGAGAGGATGTCGCCTGAGACGCCGCCGGCTCAGCCGCCGATGTGGAAGCTGGCGTTCCGGTTCAAGCCGCAGCTCCCGATCTTCACCGGGAGCAAGATCGAGGACGTGAACGGCAACCCACTGGAGATCATCCTCGTCGACGTCGACACCGGCGCGCCGGCGACGATCTCGCAGCCTCTGCGCGTCGAGGTCGTCCCGGTCCTGGGCGACTTCCCGCCGGACGACCGCGAGCACTGGACGGCGGAGGAGTTCCAGCAGAGGGGCATCGTGAAGGAGCGCTCCGGCAAGCGCCCGCTCCTCACCGGCGACGTCAGCCTCACCATGCGCGACGGCTGCGTCGTCGTGAACGAGCTCCAGTTCACGGACAACTCCTCCTGGGTTCGCTGCCGCAGGTTCCGCATCGGCGTCCGCGTCGTGCCGGGCAGCTACGACGGCCCAAGAATAGGCGAGGCCATGACCGAGCCCTTCGTCGTCAGAGACCACCGCGGCGAACTGTACAGGAAGCACTACCCTCCCGTTCTTGGCGACGATGTCTGGAGGCTTGAGAAGATTGGCAAGGAGGGTGCCTTCCACAGGAAGCTGACGCAGCACAACGTCAGGAACGTGCAGGAGTTCTTGCGGCTGCTCACGGTTAAGCCGGACGAGCTGCGCGCTATCATGGGCGACGGCATGACCGATCGCATGTGGGAGGTGACGACGAGCCACGCCAAGAAGTGCGTCCCCGGCGACAAGGTGTACATGTACAGCACGCAGCACGGCACCGTCTACGTCAACTCCATCTTCGAGCTCGTGAAGGTCGAGCTCGCCGGCGTGGAGTACCAGCTGCACCAGCTGAACAGGGGTCAGAAGGCGTTCGTGCATCAGCTGCTGCTGGCGGCGTACGAGCAGCGAAACAACCTCCAAGAGGCCGACGCCATGGCGCTCCACTGCAACGACGTTCCTCTGCTGCAGAATGCAGCGGAGATAACTATCCCGGCGCTTGGAGACACGCAGCTGTGGATTCAGAACAGTCTCAACAGCCAAGAAATCGACTTCCAGGTCGACGAGATCCCCCAAGCTAACTTTGCGCTTCAGTGGACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCTGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACACGAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCCCTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAACATGGAGAAGGAGAACATGTATGATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTCTGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACATCAAGTCCCAGTAAATAAATAACTCATTTTTTTTTTGTAAAAAA] [-] EMBL CF297896 [AAACCACCCCAACCTGCACAACCTTTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGAAAAAA ] [+] EMBL CF317969 [ ACCACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAAAAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGCTACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACGGTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGC ] [+] EMBL AK111442 [ ACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAAAAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGCTACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACGGTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGCCACTTCTCCGTAGAGTGGTGCAGGAGGAGCTCCAGGCAGGTCTCGTGCGCAGCCCGCGTTACATCGAGAGGATGTCGCCTGAGACGCCGCCGGCTCAGCCGCCGATGTGGAAGCTGGCGTTCCGGTTCAAGCCGCAGCTCCCGATCTTCACCGGGAGCAAGATCGAGGACGTGAACGGCAACCCACTGGAGATCATCCTCGTCGACGTCGACACCGGCGCGCCGGCGACGATCTCGCAGCCTCTGCGCGTCGAGGTCGTCCCGGTCCTGGGCGACTTCCCGCCGGACGACCGCGAGCACTGGACGGCGGAGGAGTTCCAGCAGAGGGGCATCGTGAAGGAGCGCTCCGGCAAGCGCCCGCTCCTCACCGGCGACGTCAGCCTCACCATGCGCGACGGCTGCGTCGTCGTGAACGAGCTCCAGTTCACGGACAACTCCTCCTGGGTTCGCTGCCGCAGGTTCCGCATCGGCGTCCGCGTCGTGCCGGGCAGCTACGACGGCCCAAGAATAGGCGAGGCCATGACCGAGCCCTTCGTCGTCAGAGACCACCGCGGCGAACTGTACAGGAAGCACTACCCTCCCGTTCTTGGCGACGATGTCTGGAGGCTTGAGAAGATTGGCAAGGAGGGTGCCTTCCACAGGAAGCTGACGCAGCACAACGTCAGGAACGTGCAGGAGTTCTTGCGGCTGCTCACGGTTAAGCCGGACGAGCTGCGCGCTATCATGGGCGACGGCATGACCGATCGCATGTGGGAGGTGACGACGAGCCACGCCAAGAAGTGCGTCCCCGGCGACAAGGTGTACATGTACAGCACGCAGCACGGCACCGTCTACGTCAACTCCATCTTCGAGCTCGTGAAGGTCGAGCTCGCCGGCGTGGAGTACCAGCTGCACCAGCTGAACAGGGGTCAGAAGGCGTTCGTGCATCAGCTGCTGCTGGCGGCGTACGAGCAGCGAAACAACCTCCAAGAGGCCGACGCCATGGCGCTCCACTGCAACGACGTTCCTCTGCTGCAGAATGCAGCGGAGATAACTATCCCGGCGCTTGGAGACACGCAGCTGTGGATTCAGAACAGTCTCAACAGCCAAGAAATCGACTTCCAGGTCGACGAGATCCCCCAAGCTAACTTTGCGCTTCAGTGGACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCTGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACACGAAGGTTA ] [-] EMBL CF337429 [ ACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCTGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACACGAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCCCTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAACATGGAGAAGGAGAACATGTATGATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTCTGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACATCAAGTCCCAGTAAATAAATAACTCATTTTTTTTTTGTAAAAAA] [-] EMBL BI305921 [ CCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGG ] [-] EMBL BI306421 [ CCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGG ] [-] EMBL CB967392 [ CATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGG TTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGG ] consensusID : consensus_11062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 67 fasta sequence [GCACTCCTTGCTTGCTGAATCAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCT] [+] EMBL CB965987 [GCACTCCTTGCTTGCTGAATCAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11062#0 AAACCACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCT 60 consensus_11062#1 -----------------GCACTCCTTGCTTGCTGAATCAAA-TCTCACAGCTTCGCTTCT 42 ** * * ** * *** **** ****************** consensus_11062#0 CTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAA 120 consensus_11062#1 CTCTCGCCTCCCGAAGAAAATAGCT----------------------------------- 67 ************************* consensus_11062#0 AAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGC 180 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 TACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACG 240 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 GTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGCCA 300 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CTTCTCCGTAGAGTGGTGCAGGAGGAGCTCCAGGCAGGTCTCGTGCGCAGCCCGCGTTAC 360 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ATCGAGAGGATGTCGCCTGAGACGCCGCCGGCTCAGCCGCCGATGTGGAAGCTGGCGTTC 420 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CGGTTCAAGCCGCAGCTCCCGATCTTCACCGGGAGCAAGATCGAGGACGTGAACGGCAAC 480 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CCACTGGAGATCATCCTCGTCGACGTCGACACCGGCGCGCCGGCGACGATCTCGCAGCCT 540 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CTGCGCGTCGAGGTCGTCCCGGTCCTGGGCGACTTCCCGCCGGACGACCGCGAGCACTGG 600 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ACGGCGGAGGAGTTCCAGCAGAGGGGCATCGTGAAGGAGCGCTCCGGCAAGCGCCCGCTC 660 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CTCACCGGCGACGTCAGCCTCACCATGCGCGACGGCTGCGTCGTCGTGAACGAGCTCCAG 720 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 TTCACGGACAACTCCTCCTGGGTTCGCTGCCGCAGGTTCCGCATCGGCGTCCGCGTCGTG 780 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CCGGGCAGCTACGACGGCCCAAGAATAGGCGAGGCCATGACCGAGCCCTTCGTCGTCAGA 840 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 GACCACCGCGGCGAACTGTACAGGAAGCACTACCCTCCCGTTCTTGGCGACGATGTCTGG 900 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 AGGCTTGAGAAGATTGGCAAGGAGGGTGCCTTCCACAGGAAGCTGACGCAGCACAACGTC 960 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 AGGAACGTGCAGGAGTTCTTGCGGCTGCTCACGGTTAAGCCGGACGAGCTGCGCGCTATC 1020 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ATGGGCGACGGCATGACCGATCGCATGTGGGAGGTGACGACGAGCCACGCCAAGAAGTGC 1080 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 GTCCCCGGCGACAAGGTGTACATGTACAGCACGCAGCACGGCACCGTCTACGTCAACTCC 1140 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ATCTTCGAGCTCGTGAAGGTCGAGCTCGCCGGCGTGGAGTACCAGCTGCACCAGCTGAAC 1200 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 AGGGGTCAGAAGGCGTTCGTGCATCAGCTGCTGCTGGCGGCGTACGAGCAGCGAAACAAC 1260 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CTCCAAGAGGCCGACGCCATGGCGCTCCACTGCAACGACGTTCCTCTGCTGCAGAATGCA 1320 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 GCGGAGATAACTATCCCGGCGCTTGGAGACACGCAGCTGTGGATTCAGAACAGTCTCAAC 1380 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 AGCCAAGAAATCGACTTCCAGGTCGACGAGATCCCCCAAGCTAACTTTGCGCTTCAGTGG 1440 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGC 1500 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 TGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGT 1560 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ATAACTGTGTTCAAGTGACACGAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCC 1620 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 CTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGC 1680 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 GAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTT 1740 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 TAGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAAC 1800 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 ATGGAGAAGGAGAACATGTATGATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTC 1860 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 TGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACATCAAGTCCCAGTAAATAAA 1920 consensus_11062#1 ------------------------------------------------------------ consensus_11062#0 TAACTCATTTTTTTTTTGTAAAAAA 1945 consensus_11062#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||