These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1136 fasta sequence [TTTTTTTGCAGCATTGCAGCCCCTAATTAATCCCATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGAGGAGGAGGAGGACGACGACGACGACCTGCCGCCGTTCGGCGAGCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCGGCGAAGCCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGATCCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGCGGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCGTCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGGGCGGAGACGAGGGCGTTGGCGGTGTGGACGGCGACGTCGCAGGCGCGGCAGAGGAGGGCGCGGTCCTCGACGCAGAAGAAGTAGGCGTGGGCGTCCTGGCAGATGTCGCAGGTCGGGGGGGAGGGAGAGGAGGAAGTAGAGGAGGAGGAGAGGAGGGGGAGGCGGTGGTGCTTGCCGGCGAGGCGGTTGGCGGCGTGGACGTGGAGGTCGCAGCGCGCGCAGAGGGCGGCGTCGTCGGCGCAGCAGAGCACCCGCGCCTCCGCCGCCTCGCACGCGGAGCACAGCACCTTCATCGATCTAGCTACCTACCTACCACCACGACTCATCCACGAGGCGCTGGGG] [+] EMBL CB659560 [TTTTTTTGCAGCATTGCAGCCCCTAATTAATCCCATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGAGGAGGAGGAGGACGACGACGACGACCTGCCGCCGTTCGGCGAGCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCGGCGAAGCCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGATCCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCNGCGGCGGCTGCGGGGGCGGTGCCGT ] [-] EMBL CB660660 [ ACGACGACCTGCCGCCGTTCGGCGAGCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCGGCGAAGCCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGATCCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGCGGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCGTCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGGGCGGAGACGAGGGCGTTGGCGGTGTGGA ] [-] EMBL CB659559 [ GGCGGTGCCGGCCGTGACGGGGCCACGGGAGGCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCGTCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCCCAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGCGGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCGTCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGGGCGGAGACGAGGGCGTTGGCGGTGTGGACGGCGACGTCGCAGGCGCGGCAGAGGAGGGCGCGGTCCTCGACGCAGAAGAAGTAGGCGTGGGCGTCCTGGCAGATGTCGCAGGTCGGGGGGGAGGGAGAGGAGGAAGTAGAGGAGGAGGAGAGGAGGGGGAGGCGGTGGTGCTTGCCGGCGAGGCGGTTGGCGGCGTGGACGTGGAGGTCGCAGCGCGCGCAGAGGGCGGCGTCGTCGGCGCAGCAGAGCACCCGCGCCTCCGCCGCCTCGCACGCGGAGCACAGCACCTTCATCGATCTAGCTACCTACCTACCACCACGACTCATCCACGAGGCGCTGGGG] consensusID : consensus_11078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 725 fasta sequence [TTTTTGAAACAAATTGACTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCCTTAATTTCTATTCCCTCCGTCTCTAAATAT-AGGAATTTTAATTAGACAGCCAAAATCACTTA---TATTTAGGGACGGAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCA-TTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGCCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGC-GGCGAGGGGAGCTCCGGCACGGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCC-GC-CGCCGCGCGCGCGCGGGGGGCGGCGGAGGAGGACGACGACGACGACGACACTGCGCGTTCGGCGAGCCGGTCCATGGTCCCGAATCTGGCGGTGTCCGGC] [-] EMBL BM418675 [TTTTTGAAACAAATTGACTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCCTTAATTTCTATTCCCTCCGTCTCTAAATATAAGGAATTTTAATTAGACAATCAAAATCACTTATATTATTTAGGGACGTAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAACATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCA TTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGCCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACGGTAG ] [+] EMBL CB660661 [ ctttTAAATAT AGGGATTTTAATTAGACAGCCAAAATCACTTA TATTTAGGGACGGAGGAGAGTAGTAACTCACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGC GGCGAGGGGAGCTCCGGCACGGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCC GC CGCCGC ] [+] EMBL CB654763 [ GACAGCCAAAATCACTTA TATTTAGGGACGGACCATAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCGCGCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGC GGCGAGGGGAGCTCCGGCACGGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCC GC CGCCGC ] [-] EMBL BI811305 [ ttTTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCA TTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGCCGGCGGCGGCGAAGCAACGGAAGGGGTTCTCCGGCGAGGAGATGTCCGGCACGAACACCG GCTGGCGTCGGTGGCGCCGCCACCGTAGCGCGGGTCCCGTTGCCAGTGGAGCCCTGACGCCGTGGGCTGGCGAGGGGAGCTCCGGCACGG CCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCCGGCGCGCCGCGCGCGCGCGGGGGGCGGCGGAGGAGGACGACGACGACGACGACACTGCGCGTTCGGCGAGCCGGTCCATGGTCCCGAATCTGGCGGTGTCCGGC] [-] EMBL BE229816 [ CGATCACCTAGTAGCAGGCTAACTAGCCAAGTACATCAATTTANTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTACTACATGTACCAANTCGAACATTTTCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11078#0 ------------------------------------------------------------ consensus_11078#1 TTTTTGAAACAAATTGACTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCC 60 consensus_11078#0 ------------------------------------------------------------ consensus_11078#1 TTAATTTCTATTCCCTCCGTCTCTAAATATAGGAATTTTAATTAGACAGCCAAAATCACT 120 consensus_11078#0 --------------------------------------------TTTTTTTGCAGCATTG 16 consensus_11078#1 TATATTTAGGGACGGAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTG 180 ********** consensus_11078#0 CAGCCCCTAATTAATCCCATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCAC 76 consensus_11078#1 CAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCAC 240 **************** ****************************************** consensus_11078#0 CTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAA 136 consensus_11078#1 CTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAA 300 ************************************************************ consensus_11078#0 TCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATT 196 consensus_11078#1 TCTCACACTCAAATACTCCTACTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATT 360 ************************************************************ consensus_11078#0 TTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGT 256 consensus_11078#1 TTTTTTCTCTCATTT-GTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGT 419 *************** ******************************************** consensus_11078#0 ATGGTCACCGGCGGCGGAGGAGGAGGAGGACGACGACGACGACCTGCCGCCGTTCGGCGA 316 consensus_11078#1 ATGGTCACCGGCGCCGGCGGCGGCGAAG--CAACGGAAGGGGTTCTCCGG----CGAGGA 473 ************* *** ** ** * ** * *** * *** ** ** consensus_11078#0 GCCGTCCATGCTCCCGATCTTGCCGCTGTCCGCCTTGGACGTGCCGTTCTCG--GCGAAG 374 consensus_11078#1 GATGTCCGG---CACGAACACCGCGCTG---GCGTCGGTGGCGCCGCCACCGTAGCGCGG 527 * **** * *** * ***** ** * ** * **** ** *** * consensus_11078#0 CCGAAGCCGGAGCTGAAGTCGGCGAAGCCGAAGAACTCGTTGAGCGGCCAGTCCGGCGAT 434 consensus_11078#1 GTCCCGTTGCCAGTGGAGCCC-TGACGCCGTGGG---CGGCGAGGGG--AGCTCCGGCAC 581 * * ** ** * ** **** * ** *** ** ** * * * consensus_11078#0 CCGCCGGCGAGGTTGCCGAACACCGCCGCGGCGGTGCCGGCCGTGACGGGGCCACGGGAG 494 consensus_11078#1 GGCCCAGTGAACTTCCGGCACCTGGCCGAAGAAGTCCTGGCCGCCGCCGCGC-GCGCGCG 640 ** * ** ** * * ** **** * ** * ***** * * ** ** * * consensus_11078#0 GCCCGCTTCGGCGGGGTCTTGGTCACCACCGGCGGCAGCGCAGGGGTGTTGAACTGCTCG 554 consensus_11078#1 GGGGGCGGCGGAGGA-----GGACGACGACGACGACGACACTGCGCGTTCGGCGAGCCGG 695 * ** *** ** ** * * ** ** * * * * * * * ** * consensus_11078#0 TCGACGAGCGACCAGTCGGGCAGGTTGCCGGTGATGCCGATGTCGTGGCCACCGGTGGCC 614 consensus_11078#1 TCCATGGTCC-CGAATCTGGC-GGTGTCCGGC---------------------------- 725 ** * * * * * ** *** *** **** consensus_11078#0 CAGTCGATGACGTCGTCATCGCTGTAGATCGGCGAGGGGCTGCGCTTCGGCGGCGGCTGC 674 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 GGGGGCGGTGCCGTGTTGCGCGGCAGCGACGACGACAAGGGGTGTGGGGGGTGTTTGTCG 734 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 TCGTCGTCGGCGGCGGCGTCAAGGCCGACGTGGACGCCGGTGAGGAGGAAGCGGCGGTGG 794 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 GCGGAGACGAGGGCGTTGGCGGTGTGGACGGCGACGTCGCAGGCGCGGCAGAGGAGGGCG 854 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 CGGTCCTCGACGCAGAAGAAGTAGGCGTGGGCGTCCTGGCAGATGTCGCAGGTCGGGGGG 914 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 GAGGGAGAGGAGGAAGTAGAGGAGGAGGAGAGGAGGGGGAGGCGGTGGTGCTTGCCGGCG 974 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 AGGCGGTTGGCGGCGTGGACGTGGAGGTCGCAGCGCGCGCAGAGGGCGGCGTCGTCGGCG 1034 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 CAGCAGAGCACCCGCGCCTCCGCCGCCTCGCACGCGGAGCACAGCACCTTCATCGATCTA 1094 consensus_11078#1 ------------------------------------------------------------ consensus_11078#0 GCTACCTACCTACCACCACGACTCATCCACGAGGCGCTGGGG 1136 consensus_11078#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||