These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 664 fasta sequence [GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGC-CGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGCTGGAATAACAAGATGAACTGCACGTTGTTTCGCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTATCAAACAGAACAGTGTTTTCTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGTATGTGCA] [+] EMBL BI305527 [GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGC CGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGCTGGAATAACAAGATGAACTGCACGTTGTTTCGCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTATCAAACAGAACAGTGTTTTCTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGTATGTGCA] [-] EMBL BI806435 [ CCAAAAGACNCTCTCTTGTATTAAAATCAGCAACAGTTTAATTAA TG TCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATG TTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGG CCTTGACCCACTTGATGCCACTG TCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCG CGCCTTCGCCTTCACGAGGGCCTCCGACGCCGCGG CTTCACGTAGCACGG CA CGTCTTCTTCTCGCTGTTCCCG TG TG CTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCG CACCAGATGAGCCCCACTGGTCTG CCAGGT ] consensusID : consensus_11082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 611 fasta sequence [TTTTTACACTTTTTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAAATTACCTTTGCTTCGTGAGGTGGGAGTA] [-] EMBL CF334767 [TTTTTTTTTTTTTTTTTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAA ] [-] EMBL AK063006 [ ACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGTCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGT AAAAAAAAAAAAAGAGGGGAAATTACCTTTGCTTCGTGAGGTGGGAGTA] [-] EMBL AK104941 [ ACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCT ] [-] EMBL AU095284 [ TTTTTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCNCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACNGGCCCTTGACCCACTTGATGCCACNGCTCGTCCCGGACTTCACCTTGTGCGCNCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCNCCGACGCCGNGGCCTTCACGTTGCCGGCCACCGTCTTCT ] [+] EMBL CF334766 [ TTTTTTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAAAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAAATTACCTTTt ] [-] EMBL AU095283 [ GGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCNTCTTCTGGTACTGGCCCTTGACCCACTTGATGCNACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGNCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGNATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11082#0 GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAA 60 consensus_11082#1 -------------------------------------TTTTTACACTTTTTTGTATTAAA 23 ***** * ********** consensus_11082#0 ATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACAT 120 consensus_11082#1 ATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACAT 83 ************************************************************ consensus_11082#0 AACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAG 180 consensus_11082#1 AACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAG 143 *** ** ***************************************************** consensus_11082#0 TGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTC 240 consensus_11082#1 TGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTC 203 ************************************************************ consensus_11082#0 TTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGC 300 consensus_11082#1 TTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGC 263 ************ *********************************************** consensus_11082#0 GCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACG 360 consensus_11082#1 GCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACG 323 ************************************************************ consensus_11082#0 TTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTC 420 consensus_11082#1 TTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTC 383 ************************************************************ consensus_11082#0 TTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTC 480 consensus_11082#1 TTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTC 443 ************************************************ *********** consensus_11082#0 TTGGAACCCATGGAGACGCTAGCTGGAGCTGGAA--TAACAAGATGAACTGCACGTTGTT 538 consensus_11082#1 TTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGA-CGATATGTTTCT 502 **************************** * ** *** ***** * * *** * consensus_11082#0 TCGCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTAT-CAAACAGAACAGTGT 597 consensus_11082#1 TCCCT--TCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGA---- 556 ** ** * ** * * * ** * * * *** ** **** * * consensus_11082#0 TTTCTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGT 657 consensus_11082#1 --TGTAAAAAAAAA-------AAAAAAAGAGGGGAAATTACCTTTGCTTCG-TGAGGTGG 606 * * ** * ** *** ** ** * ***** * **** * **** * consensus_11082#0 ATGTGCA 664 consensus_11082#1 GAGTA-- 611 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||