These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 666 fasta sequence [AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCTCCTCCTCTCGGCCGCCGTGCTTC-TGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGCCAGCGCGGCGACGACGTCCTGCCAGCCGGGCAT-GCGATCCCGCACGACCCG-CTCC-GCGGCTGCCGCCGGTACGTGCTCCGGCGC-GCGTGCG-GCCTCGCCGCCGGCGGG-CGGCTGTACG-ACTGGTCG-CTGAAGGAGCTTTGCTGCCAGGAGCTC-GCCGCCGTGCCGGCCT-ACTGCCGGTGC-GCCGCG-CTGGCCTACTTCATGGACGGC-GCGTCCGA-GGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA-GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA-TGGCGGACCGTACTGCCTCGAGCTCA-CCGACA-GGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA-CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC-AATGCTTTTTTTTCCCTTTTCTAACAAAAAAAAAA] [+] EMBL AK107870 [AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCTCCTCCTCTCGGCCGCCGTGCTTC TGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGCCAGCGCGGCGACGACGTCCTGCCAGCCGGGCATGGCGATCCCGCACGACCCG CTCC GCGGCTGCCGCCGGTACGTGCTCCGGCGC GCGTGCG GCCTCGCCGCCGGCGGG CGGCTGTACG ACTGGTCG CTGAAGGAGCGTTGCTGCCAGGAGCTC GCCGCCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCGTGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATATTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCAATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AA ] [+] EMBL BI800897 [ gctTTCGTGTCCGTGGTTCCCATC CC C GCGGCGGTTAC GCCAGC CGCGGACGACGTCCT CCA CCGGCCAT GCGATCCCGCACGACCCG CTCC GCGGCTTCCCCCGGTACGTGCTCCGGCGC GCGTGCG GCCTC CCGCCGGCGGG CGGCTGTACG ACTGGTCG CTGAAGGAGCTTTGCTGCCGGGAGCTC CC CCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGCC CCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGTTCTC CCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCCAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATACAAATGCTTTTTTTTCCCTTTTCCAACAAAAAAAAAA] [+] EMBL BI796517 [ CTGCCAGCCGGGCAT GCGATCCCGCACGACCCGTCTCC GCGGCTGCCGCCGGTACGTGCTCCGGCGC GCGTGCG GCCTCGCCGCCGGC GG CGGCTGTACG ACTGGTCG CTGAAGGAGCTTTGCTGCCGGGAGCTC GCCGCCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC ATGCTTTTTTTTCCCTTTTCAAAaa ] [+] EMBL BI802376 [ CGCACGACCCGTCTCCTGCGGCTGCCTCCGGTACGTGCTCCGGCGCTGCGTTCGTGCCTCGCCGCCGGCGGGTCGGCTGTACGTACTGGTCGTCTGAAGGAGCTTTGCTGCCGGGAGCTCTGCCGCCGTGCCGGCCT ACTGCCGGTGCTGCCGCG CTGGCCTACTTCATGGACGGCTGCGTCCGATGGGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGATGGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCACTGGCGGACCGTACTGCCTCGAGCTCATCCGACACGGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCACCCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCCTGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACCAGCATATATAC CATGCTTTTTTTTCCC AAAAAAAAAA ] [+] EMBL OSC194 [ CCAGGAGCTC GCCGCCGTGCC CCNTNACTGCCGTNGC GCCGCG CTGGCCTACTTCATGGACGGC GCGT CGA GGGCCGCCTCCT GGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGAGATGCCCAAATATTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCAATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AATGCTTTTTTTT CCTTTTCTGACAAAANAAA ] [+] EMBL AU101302 [ CAGGAGCTCGGCCCCCGTGCCGGCCT ACTGCCGGTGC GCCGCG CTGGCCTACTTCATGGACGGC GCGTCCGA GGGCCGCCTCCTG GCACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATATTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCAATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AATGCTTTTTTTTCCCTTTTCTGACAAAAAA ] [+] EMBL BI801714 [ CT ACTGCCGGTGC CCGCGCCTGGCCTACTTCATGGACGGC GCGTCCGA GGCCGCCTCCTGGAGGACCTCCCCGGATGCCCGA GGGAGACGCAGAGGGGTCTC CCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCA TGGCGGACCGTACTGCCTCGAGCTCA CCGACA GGGAGATGCCCAAATACTGAATTGAAGTGATGGATTAATTAGTAGTGTGTTCA CCGTGAATAAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGTGCATCATCAGTGATGTGTGTTGAATAACAAGCATATATAC AATGCTTTTTTTTCCaaaaaa ] consensusID : consensus_11083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [ACGCCAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCTCCCGCGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCCCGCGGTCGTCTGTACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTTCTGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGGAGGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACAGGGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTGAATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTCCCTTTAAAAAAAAAAA] [+] EMBL BI801738 [ACGCCAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCTCCCGCGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCCCGCGGTCGTCTGTACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTTCTGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGGAGGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGCCCGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACAGGGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTGAATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTTGAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTCCCTTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11083#0 AATACTGCACTGCATAAGTTCAGAAAACTAGAGCAGATCGAGAATGGCATCCAAGAACCT 60 consensus_11083#1 ------------------------------------------------------------ consensus_11083#0 CCTCCTCTCGGCCGCCGTGCTTCTGTCCGTGCTCGCCATCGCCGCGGCGGCGGCTACGGC 120 consensus_11083#1 -------------------------------------------------------ACG-C 4 *** * consensus_11083#0 CAGCGCGGCGACG-ACGTCCTGCCAGCCGGGCATG-CGATCCCGCAC-GACCCGCTCC-G 176 consensus_11083#1 CAGCGCGGGTGTGCACTTCCTGCCATCCGGGCATGGCGATCCCGCACTGACCCGCTCCCG 64 ******** * ** ******** ********* *********** ********** * consensus_11083#0 CGGCTGCCGCCGGTACGTG-CTCCGGCGCGCGTGCGGCCTCGCCGCCGGCGGGCGGCTGT 235 consensus_11083#1 CGGCTCCCGCCGGTACGTGTCTCCGGCGCGCGTCAGGCCTCCCC---CGCGGTCGTCTGT 121 ***** ************* ************* ****** ** **** ** **** consensus_11083#0 ACGACTGGTCG-CTGAAGG-AGCTTTGCTG-CCAGGAGCTCGC-CGCCGTGCCGGCCTAC 291 consensus_11083#1 ACGACTGGTCTTCTGAAGGTATCTTTCCTGTCCGGGAGCTCGCTCCCCGTGCCGCCCTTC 181 ********** ******* * **** *** ** ********* * ******** *** * consensus_11083#0 TGCCGGTGCGCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGG-CCGCCTCCTGGA 350 consensus_11083#1 TGCCGGTGCTCCGCGCTGGCCTACTTCATGGACGGCGCGTCCGAGGGTCCCCCTCCTGGA 241 ********* ************************************* ** ********* consensus_11083#0 GGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCGCCGCCATGCTCACCACGCC 410 consensus_11083#1 GGACCTCCCCGGATGCCCGAGGGAGACGCAGAGGGGTCTCCCCGCCATGCTCACCACGCC 301 **************************************** ******************* consensus_11083#0 CGGCGAGTGCAACCTCGAGACCATCCATGGCGGACCGTACTGCCTCGAGCTCACCGACAG 470 consensus_11083#1 CGGCGAGTGCAACCTCGAGACCATCCCTGGCGGACCGTTCTGCCTCGAGCTCACCGACAG 361 ************************** *********** ********************* consensus_11083#0 GGAGATGCCCAAAT-ACTGAATTGAAGTG-ATGGATTAATTAGTAGTGTGTTCACCGTGA 528 consensus_11083#1 GGAGATGCCCAAATTACTGAATTGAAGTGTATGGATTAATTAGTAGTGTGTTCACCGTGA 421 ************** ************** ****************************** consensus_11083#0 ATA-AGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTT 587 consensus_11083#1 ATACAGTGTTGCTAATCGCATCGATCTATGGTCCATGGATCATCACATGAATGCATGCTT 481 *** ******************************************************** consensus_11083#0 GAGTGCATCA-TCAGTGATGTGTGTTGAATAACAAGCATATATACAATGCTTTTTTTTCC 646 consensus_11083#1 GAGCCCATCACTCAGTGATGTCTGTTGAATAACAAGCATATATACCATGCTTTTTTTTCC 541 *** ***** ********** *********************** ************** consensus_11083#0 CTTTTCTAACAAAAAAAAAA 666 consensus_11083#1 CTTT---AAAAAAAAAAA-- 556 **** ** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||