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Oryza sativa
cluster # 11087 cluster # 11087       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11087#0 length = 1930 sequences # 6  
consensus_11087#1 length = 561 sequences # 2  

consensusID : consensus_11087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1930
fasta sequence
                              [ACATCACAGGCAGGCAGGCAGGCACAGGCTGTGTCCCCAACACAACACAAGACTACTACTCCCAAATCCCCAATTTCATTCTCCTTGATCCCACCCAGCCACTCAATCCCAGATCCGAATCCCACCTCTCCGTCTCATTCTCCGGCGCCGGCCAGAAATGCTGCCCTCCTCCTCCTTTAGGCGTTGGGGGGAGCTAGAGCTCTAGCTAGCTAGCTAGGTGCGACGCGACGACGTGATGGCTGGTATTGCTAAGGAGAGGCGGCTGCCGCCGGCGCTGCCACTCGCCACTCTCATCGGCCGCGAGCTCCGCGCCGGGGGCTCCGAGCGCCCCTCCCTCCGCTACGGCCACGCCGGCTTCGCCAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGGGACACCTCCACCGCCTTCTCCGTCTTCGCGGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGTCTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCGCGACGACTGGCTACAGGCGCTGCCGCGGGCGCTCGTCGCCGGCTTCGTCAAGGCCGACATCGACTTCCAGCGCAAGGGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGGATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGGTGGTGAGGTGCAGCTGCTCACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCGGGTTACCGCCAGCGGTGGGGAGGTCGGCCGCCTCAATCTCTTCGGCGGCCAGGAGGTTGGTCCTCTCCGGTGCTGGCCAGGTGGCCTGTGCCTTTCAAGATCTATCGGGGACATGGATGTCGGGGAGTTCATTGTGCCGATTCCACATGTGAAGCAAGTGAAGCTCTCAAACATTGGAGGAAGGTTGATCATCGCATCAGATGGTATATGGGATGCACTACCCTCTGAAGCAGCAGCAAAGGCATGCCGAGGTTTACCTGCAGAACTGGCTGCAAAGCTTGTGGTTAAGCAAGCTCTCAAAAAAAGTGGGCTGAAAGATGACACCACTTGTGTGGTGGTTGATATCATCCCTTCCGATTATCGTTTGACATCGCCGCAGTTGTCCCCAAAGAGAAACCAGAGCAAGTTCAAGTCTCTTCTTTTCGGTAGAAGGTCACACAGTTCAATTGGAAAGCTTGGAGGCAAGTCTGCCTCTTTTGGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATT-GAATTATTATTTTCTG-AAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGA-TTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTTTGCTGGAATGAAATTAATTGTCAAGCATATACAGTCCTTAATAAATAAAAGA]

[+] EMBL AK068590             [ACATCACAGGCAGGCAGGCAGGCACAGGCTGTGTCCCCAACACAACACAAGACTACTACTCCCAAATCCCCAATTTCATTCTCCTTGATCCCACCCAGCCACTCAATCCCAGATCCGAATCCCACCTCTCCGTCTCATTCTCCGGCGCCGGCCAGAAATGCTGCCCTCCTCCTCCTTTAGGCGTTGGGGGGAGCTAGAGCTCTAGCTAGCTAGCTAGGTGCGACGCGACGACGTGATGGCTGGTATTGCTAAGGAGAGGCGGCTGCCGCCGGCGCTGCCACTCGCCACTCTCATCGGCCGCGAGCTCCGCGCCGGGGGCTCCGAGCGCCCCTCCCTCCGCTACGGCCACGCCGGCTTCGCCAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGGGACACCTCCACCGCCTTCTCCGTCTTCGCGGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGTCTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCGCGACGACTGGCTACAGGCGCTGCCGCGGGCGCTCGTCGCCGGCTTCGTCAAGGCCGACATCGACTTCCAGCGCAAGGGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGGATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGGTGGTGAGGTGCAGCTGCTCACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCGGGTTACCGCCAGCGGTGGGGAGGTCGGCCGCCTCAATCTCTTCGGCGGCCAGGAGGTTGGTCCTCTCCGGTGCTGGCCAGGTGGCCTGTGCCTTTCAAGATCTATCGGGGACATGGATGTCGGGGAGTTCATTGTGCCGATTCCACATGTGAAGCAAGTGAAGCTCTCAAACATTGGAGGAAGGTTGATCATCGCATCAGATGGTATATGGGATGCACTACCCTCTGAAGCAGCAGCAAAGGCATGCCGAGGTTTACCTGCAGAACTGGCTGCAAAGCTTGTGGTTAAGCAAGCTCTCAAAAAAAGTGGGCTGAAAGATGACACCACTTGTGTGGTGGTTGATATCATCCCTTCCGATTATCGTTTGACATCGCCGCAGTTGTCCCCAAAGAGAAACCAGAGCAAGTTCAAGTCTCTTCTTTTCGGTAGAAGGTCACACAGTTCAATTGGAAAGCTTGGAGGCAAGTCTGCCTCTTTTGGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATT GAATTATTATTTTCTG AAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGA TTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTT                                                    ]
[+] EMBL CB667803             [ACATCACAGGCAGGCAGGCAGGCACAGGCTGTGTCCCCAACACAACACAAGACTACTACTCCCAAATCCCCAATTTCATTCTCCTTGATCCCACCCAGCCACTCAATCCCAGATCCGAATCCCACCTCTCCGTCTCATTCTCCGGCGCCGGCCAGAAATGCTGCCCTCCTCCTCCTTTAGGCGTTGGGGGGAGCTAGAGCTCTAGCTAGCTAGCTAGGTGCGACGCGACGACGTGATGGCTGGTATTGCTAAGGAGAGGCGGCTGCCGCCGGCGCTGCCACTCGCCACTCTCATCGGCCGCGAGCTCCGCGCCGGGGGCTCCGAGCGCCCCTCCCTCCGCTACGGCCACGCCGGCTTCGCCAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGGGACACCTCCACCGCCTTCTCCGTCTTCGCGGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGTCTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCGCGACGACTGGCTACAGGCGCTGCCGCGGGCGCTCGTCGCCGGCTTCGTCAAGGCCGACATCGACTTCCAGCGCAAGGGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGGATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGGTGGTGAGGTGCAGCTGCTCACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK059256             [                                                                                     TGATCCCACCCAGCCACTCAATCCCAGATCCGAATCCCACCTCTCCGTCTCATTCTCCGGCGCCGGCCAGAAATGCTGCCCTCCTCCTCCTTTAGGCGTTGGGGGGAGCTAGAGCTCTAGCTAGCTAGCTAGGTGCGACGCGACGACGTGATGGCTGGTATTGCTAAGGAGAGGCGGCTGCCGCCGGCGCTGCCACTCGCCACTCTCATCGGCCGCGAGCTCCGCGCCGGGGGCTCCGAGCGCCCCTCCCTCCGCTACGGCCACGCCGGCTTCGCCAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGGGACACCTCCACCGCCTTCTCCGTCTTCGCGGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGTCTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCGCGACGACTGGCTACAGGCGCTGCCGCGGGCGCTCGTCGCCGGCTTCGTCAAGGCCGACATCGACTTCCAGCGCAAGGGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGGATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGGTGGTGAGGTGCAGCTGCTCACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCGGGTTACCGCCAGCGGTGGGGAGGTCGGCCGCCTCAATCTCTTCGGCGGCCAGGAGGTTGGTCCTCTCCGGTGCTGGCCAGGTGGCCTGTGCCTTTCAAGATCTATCGGGGACATGGATGTCGGGGAGTTCATTGTGCCGATTCCACATGTGAAGCAAGTGAAGCTCTCAAACATTGGAGGAAGGTTGATCATCGCATCAGATGGTATATGGGATGCACTACCCTCTGAAGCAGCAGCAAAGGCATGCCGAGGTTTACCTGCAGAACTGGCTGCAAAGCTTGTGGTTAAGCAAGCTCTCAAAAAAAGTGGGCTGAAAGATGACACCACTTGTGTGGTGGTTGATATCATCCCTTCCGATTATCGTTTGACATCGCCGCAGTTGTCCCCAAAGAGAAACCAGAGCAAGTTCAAGTCTCTTCTTTTCGGTAGAAGGTCACACAGTTCAATTGGAAAGCTTGGAGGCAAGTCTGCCTCTTTTGGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCT                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB667804             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCCTTCCGATTATCGTTTGACATCGCCGCAGTTGTCCCCAAAGAGAAACCAGAGCAAGTTCAAGTCTCTTCTTTTCGGTAGAAGGTCACACAGTTCAATTGGAAAGCTTGGAGGCAAGTCTGCCTCTTTTGGCTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGGTTGGGTAGGAATTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATT GAATTATTATTTTCTG AAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTTTGCTGGAATGAAATTAATTGTCAAGCATATACAGTCCTTAATAAATAAAAGA]
[+] EMBL BI808461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCTCT TGGA GAATTA TTGAAGA  GCTCT CAA GTTGAAAGAA  GTTTGGTAGGAATTTGTCC TGAAAACAA CTC GCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGA GCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGAC C ATGGAGGGTAAAAGATCAA CCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATT GAATTATTATTTTCTG AAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCT CTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTTTGCTGGAATCAAATTAATTGTCAAGCATATACAGTACTTAATAATCAAAAa ]
[+] EMBL D42866               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAAAACCAAAGATGGAATAATAAGTTGCCGGATTGGAATAATTATTTTCTGAAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGA TTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATG                                                                     ]


>consensus_11087#0 ACATCACAGGCAGGCAGGCAGGCACAGGCTGTGTCCCCAACACAACACAAGACTACTACT CCCAAATCCCCAATTTCATTCTCCTTGATCCCACCCAGCCACTCAATCCCAGATCCGAAT CCCACCTCTCCGTCTCATTCTCCGGCGCCGGCCAGAAATGCTGCCCTCCTCCTCCTTTAG GCGTTGGGGGGAGCTAGAGCTCTAGCTAGCTAGCTAGGTGCGACGCGACGACGTGATGGC TGGTATTGCTAAGGAGAGGCGGCTGCCGCCGGCGCTGCCACTCGCCACTCTCATCGGCCG CGAGCTCCGCGCCGGGGGCTCCGAGCGCCCCTCCCTCCGCTACGGCCACGCCGGCTTCGC CAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGGGACAC CTCCACCGCCTTCTCCGTCTTCGCGGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGT CTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCG CGACGACTGGCTACAGGCGCTGCCGCGGGCGCTCGTCGCCGGCTTCGTCAAGGCCGACAT CGACTTCCAGCGCAAGGGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGG ATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGGTGG TGAGGTGCAGCTGCTCACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCG GGTTACCGCCAGCGGTGGGGAGGTCGGCCGCCTCAATCTCTTCGGCGGCCAGGAGGTTGG TCCTCTCCGGTGCTGGCCAGGTGGCCTGTGCCTTTCAAGATCTATCGGGGACATGGATGT CGGGGAGTTCATTGTGCCGATTCCACATGTGAAGCAAGTGAAGCTCTCAAACATTGGAGG AAGGTTGATCATCGCATCAGATGGTATATGGGATGCACTACCCTCTGAAGCAGCAGCAAA GGCATGCCGAGGTTTACCTGCAGAACTGGCTGCAAAGCTTGTGGTTAAGCAAGCTCTCAA AAAAAGTGGGCTGAAAGATGACACCACTTGTGTGGTGGTTGATATCATCCCTTCCGATTA TCGTTTGACATCGCCGCAGTTGTCCCCAAAGAGAAACCAGAGCAAGTTCAAGTCTCTTCT TTTCGGTAGAAGGTCACACAGTTCAATTGGAAAGCTTGGAGGCAAGTCTGCCTCTTTTGG CTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGGTTGGGTAGGAA TTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGA ACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCC CTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAA AAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTG ATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTATTTTCT GAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTAT CGTCTGCGCACAACTCTGATGGATTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCAC ATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGC ATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAAT GGATGAATTAATGTACTTTGCTGGAATGAAATTAATTGTCAAGCATATACAGTCCTTAAT AAATAAAAGA



consensusID : consensus_11087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 561
fasta sequence
                              [CCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTATTTTCTGAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTTTGCTGGAATCAAATTAATTGTCAAGCAAAAAAAAAAAAAAAAAACTCGACCTTGTG]

[-] EMBL CF303335             [CCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTATTTTCTGAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTTTGCTGGAATCAAATTAATTGTCAAGCAAAAAAAAAAAAAAAAAACTCGACCTTGTG]
[-] EMBL CF303296             [                                                              CCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTATTTTCTGAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTATCGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAATGGATGAATTAATGTACTTTGCTGGAATCAAATTAATTGTCAAGCAAAAAAAAAAAAAAAAAACTCG        ]


>consensus_11087#1 CCAAGAACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATG CGCCCCCTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGA GGGTAAAAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACA AGGTTGATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTA TTTTCTGAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCG GTTTATCGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAAT AGCTCACATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGG AATGGGCATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCT TTGTAATGGATGAATTAATGTACTTTGCTGGAATCAAATTAATTGTCAAGCAAAAAAAAA AAAAAAAAACTCGACCTTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11087#0      ACATCACAGGCAGGCAGGCAGGCACAGGCTGTGTCCCCAACACAACACAAGACTACTACT 60
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CCCAAATCCCCAATTTCATTCTCCTTGATCCCACCCAGCCACTCAATCCCAGATCCGAAT 120
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CCCACCTCTCCGTCTCATTCTCCGGCGCCGGCCAGAAATGCTGCCCTCCTCCTCCTTTAG 180
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      GCGTTGGGGGGAGCTAGAGCTCTAGCTAGCTAGCTAGGTGCGACGCGACGACGTGATGGC 240
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      TGGTATTGCTAAGGAGAGGCGGCTGCCGCCGGCGCTGCCACTCGCCACTCTCATCGGCCG 300
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CGAGCTCCGCGCCGGGGGCTCCGAGCGCCCCTCCCTCCGCTACGGCCACGCCGGCTTCGC 360
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGGGACAC 420
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CTCCACCGCCTTCTCCGTCTTCGCGGTGTTCGACGGCCACAACGGGGTCTCGGCGGCGGT 480
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CTACAGCAAGGAGCATTTGCTCGAGCACGTCATGAGCGCGCTGCCGCCGGACATCGGCCG 540
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CGACGACTGGCTACAGGCGCTGCCGCGGGCGCTCGTCGCCGGCTTCGTCAAGGCCGACAT 600
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CGACTTCCAGCGCAAGGGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGG 660
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      ATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGGTGG 720
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      TGAGGTGCAGCTGCTCACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCG 780
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      GGTTACCGCCAGCGGTGGGGAGGTCGGCCGCCTCAATCTCTTCGGCGGCCAGGAGGTTGG 840
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      TCCTCTCCGGTGCTGGCCAGGTGGCCTGTGCCTTTCAAGATCTATCGGGGACATGGATGT 900
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CGGGGAGTTCATTGTGCCGATTCCACATGTGAAGCAAGTGAAGCTCTCAAACATTGGAGG 960
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      AAGGTTGATCATCGCATCAGATGGTATATGGGATGCACTACCCTCTGAAGCAGCAGCAAA 1020
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      GGCATGCCGAGGTTTACCTGCAGAACTGGCTGCAAAGCTTGTGGTTAAGCAAGCTCTCAA 1080
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      AAAAAGTGGGCTGAAAGATGACACCACTTGTGTGGTGGTTGATATCATCCCTTCCGATTA 1140
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      TCGTTTGACATCGCCGCAGTTGTCCCCAAAGAGAAACCAGAGCAAGTTCAAGTCTCTTCT 1200
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      TTTCGGTAGAAGGTCACACAGTTCAATTGGAAAGCTTGGAGGCAAGTCTGCCTCTTTTGG 1260
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      CTCTGTGGAGGAATTATTTGAAGAAGGCTCTGCAATGTTGGAAGAAAGGTTGGGTAGGAA 1320
consensus_11087#1      ------------------------------------------------------------
                                                                                   

consensus_11087#0      TTTGTCCTTGAAAGCAACCTCGGCACCTCTTCGATGTGCTATCTGCCAGGTGGACCAAGA 1380
consensus_11087#1      ------------------------------------------------------CCAAGA 6
                                                                             ******

consensus_11087#0      ACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCC 1440
consensus_11087#1      ACCATTTGAAAGTATGATGACTGAGAAAGGAGGCAGTTACTGCTCTTCCCCATGCGCCCC 66
                       ************************************************************

consensus_11087#0      CTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAA 1500
consensus_11087#1      CTGGGGAGGTCCATATCTTTGTTTGGAGTGTCGAAAAAAGAAAGACGCAATGGAGGGTAA 126
                       ************************************************************

consensus_11087#0      AAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTG 1560
consensus_11087#1      AAGATCAAGCCACTCTACAGCGTGCAGGTGAAACAGAGCAGGGGATTCTGGACAAGGTTG 186
                       ************************************************************

consensus_11087#0      ATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTATTTTCT 1620
consensus_11087#1      ATGTTGAGTGTAAAAACTAAAGATGGAATAATAAGTTGCTGGATTGAATTATTATTTTCT 246
                       ************************************************************

consensus_11087#0      GAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTAT 1680
consensus_11087#1      GAAACTAACTGCATCCTCAGCCTGGTATAAACTATGTCTGGCTGCTGCTAACCGGTTTAT 306
                       ************************************************************

consensus_11087#0      CGTCTGCGCACAACTCTGATGGATTTTTTTT-CTTTTAATATTCTTGAGGAAATAGCTCA 1739
consensus_11087#1      CGTCTGCGCACAACTCTGATGGATTTTTTTTTCTTTTAATATTCTTGAGGAAATAGCTCA 366
                       ******************************* ****************************

consensus_11087#0      CATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGG 1799
consensus_11087#1      CATAACTTGGAGCTTGTAGTTTTGGATTGTATCCTCTAGTGTGTATTGTGTAGGAATGGG 426
                       ************************************************************

consensus_11087#0      CATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAA 1859
consensus_11087#1      CATGCCTAATGCTGTGTGTGACTTTTTATTTGAGCTAGTATACCAGAAGGCTCTTTGTAA 486
                       ************************************************************

consensus_11087#0      TGGATGAATTAATGTACTTTGCTGGAATGAAATTAATTGTCAAGCATATACAGTCCTTAA 1919
consensus_11087#1      TGGATGAATTAATGTACTTTGCTGGAATCAAATTAATTGTCAAGCAAAAAAAAAAAAAAA 546
                       **************************** ***************** * * *      **

consensus_11087#0      TAAATAAAAGA---- 1930
consensus_11087#1      AAACTCGACCTTGTG 561
                        ** *  *       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)