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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1404 fasta sequence
[GAGTAGAAAATCGAGTCCAATCACAAGTGCATAAGTAAAAGATCAATTACAATTCGATCGATTGGCCATGGAGTACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTGCAATATCGTCGTTCTGCTGGGCCTCGCCGCCGCGGCGGCGAGC--GGGCAGCTGACGGACGACTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCGCGTGGCCGCCGCGATGAAGGCCGAGATGCGCATGGGCGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGACGCGTCCATCCTCCTTGACGGCACAAACAGCGAGAAGTTCGCGGCGCCGAACAACAACTCGGTGAGAGGGTACGAAGTCATCGATGCGATAAAGGCCGACCTCGAGAGCGCCTGCCCGGGAGTCGTCTCCTGCGCCGACATAGTAGCCCTTGCAGCTAAATACGGAGTACTACTTAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAACCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGTCTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGCCAATGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCT-CACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCACCAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAACTGCCATATGGTTTAA--AAAAAAAA]
[+] EMBL CF333980 [GAGTAGAAAATCGAGTCCAATCACAAGTGCATAAGTAAAAGATCAATTACAATTCGATCGATTGGCCATGGAGTACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTGCAATATCGTCGTTCTGCTGGGCCT GCCGCCGCGGCGGCGAGC GGGCAGCTGACGGACGACTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCGCGTGGCCGCCGCGATGAAGGCCGAGATGCGCATGGGCGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGGCGCGTCCATCCTCCTTGACGGCACAAACAGCGAGAAGTTCGCGGCGCCGAACAACAACTCGGTGAGAGGGTACGAAGTCATCGATGCGATAAAGGCCGACCT ]
[+] EMBL OSR20151A [ TGCATAAGTAAAAGATCAATTACAATTCGATCGATTGGCCATGGAGTACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTGCAATATCGTCGTTCTGCTGGGCCTCGCCGACGCGGCGG GAGCAGGGGCANCTGACGGACGACTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCNCGTGGCCGCCGCGATGAAGGNCGAGATGCGCATGGGCGNCTCCCTGNTCAGGCTTCACTTNCACGACTGCTnc ]
[+] EMBL CB656279 [ ATAAGTCATAGATCAATTACAATTCGATCGATTGGCCATGGAGTACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTGCAATATCGTCGTTCTGCTGGGCCTCGCCGCCGCGGCGGCGAGC GGGCAGCTGACGGACGACTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCGCGTGGCCGCCGCGATGAAGGCCGAGATGCGCATGGGCGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGACGCGTCCATCCTCCTTGACGGCACAAACAGCGAGAAGTTCGCGGCGCCGAACAACAACTCGGTGAGAGGGTACGAAGTCATCGATGCGATAAAGGCCGACCTCGAGAGCGCCTGCCCGGGAGTCGTCTCCTGCGCCGACATAGTAGCCCTTGCAGCTAAATACGGAGTACTACTTAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGC ]
[+] EMBL CA755532 [ ATCGATTGGCCATGGAGTACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTGCAATATCGTCGTTCTGCTGGGCCTCGCCGCCGCGGCGGCGAGC GGGCAGCTGACGGACGACTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCGCGTGGCCGCCGCGATGAAGGCCGAGATGCGCATGGGCGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGACGCGTCCATCCTCCTTGACGGCACAAACAGCGAGAAGTTCGCGGCGCCGAACAACAACTCGGTGAGAGGGTACGAAGTCATCGATGCGATAAAGGCCGACCTCGAGAGCGCCTGCCCGGGAGTCGTCTCCTGCGCCGACATAGTAGCCCTTGCAGCTAAATACGGAGTACTACTTAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCCACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCT ]
[+] EMBL OSPRXRPNB [ TACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTGCAATATCGTCGTTCTGCTGGGCCTCGCCGCCGCGGCGGGCAGC GGGCAGCTGACGGACGACTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCGCGTGGCCGCCGCGATGAAGGCCGAGATGCGCATGGGCGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGACGCGTCCATCCTCCTTGACGGCACAAACAGCGAGAAGTTTGCACTTCCCAACAAGAACTCGGTGAGAGGGTACGAAGTCATCGATGCGATAAAGGCCGACCTCGAGGGCGCCTGCCCGGGAGTCGTCTCCTGCGCCGACATAGTAGCCCTTGCAGCTAAATACGGAGTACTACTTAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAACCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGTCTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGCCAATGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCT CACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCACCAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAACTGCCATATGGTTTAA AAAAAA ]
[+] EMBL AU031833 [ CAGCGCCAACGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCTCCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCACCAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAACTGCCATATGGTTTTATCAAAAAAAA]
consensusID : consensus_11089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[TGGAGGGATGAAAATTCATCTTTGATAAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAACCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGTCTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGCCAACGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCACCAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAACTGCCATATAA]
[+] EMBL AK103019 [TGGAGGGATGAAAATTCATCTTTGATAAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAACCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGTCTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGCCAACGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCACCAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAACTGCCATAT ]
[-] EMBL CF333981 [ CAAGATGGGCAACATCAGCCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCACCAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAACTGCCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11089#0 GAGTAGAAAATCGAGTCCAATCACAAGTGCATAAGTAAAAGATCAATTACAATTCGATCG 60
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 ATTGGCCATGGAGTACGCTACTCGTGGAGATCGCACGGCTAGCTGCCTGAGTTTCCTCTG 120
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 CAATATCGTCGTTCTGCTGGGCCTCGCCGCCGCGGCGGCGAGCGGGCAGCTGACGGACGA 180
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 CTACTACGACTATTGCTGCCCCCAGGTTTACCGCATCGTCCGGTCCCGCGTGGCCGCCGC 240
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 GATGAAGGCCGAGATGCGCATGGGCGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTT 300
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 CGTCAATGGCTGTGACGCGTCCATCCTCCTTGACGGCACAAACAGCGAGAAGTTCGCGGC 360
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 GCCGAACAACAACTCGGTGAGAGGGTACGAAGTCATCGATGCGATAAAGGCCGACCTCGA 420
consensus_11089#1 ------------------------------------------------------------
consensus_11089#0 GAGCGCCTGCCCGGGAGTCGTCTCCTGCGCCGACATAGTAGCCCTTGCAGCTAAATACGG 480
consensus_11089#1 -------------------------------------------TGGAGGGATGAAAATTC 17
* * ** *
consensus_11089#0 AGTACTACTTAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGT 540
consensus_11089#1 ATCTTTGATAAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGT 77
* * * **************************************************
consensus_11089#0 GGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTAT 600
consensus_11089#1 GGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTAT 137
************************************************************
consensus_11089#0 CACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGC 660
consensus_11089#1 CACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGC 197
************************************************************
consensus_11089#0 GCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGC 720
consensus_11089#1 GCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGC 257
************************************************************
consensus_11089#0 GACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTG 780
consensus_11089#1 GACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTG 317
************************************************************
consensus_11089#0 CCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAA 840
consensus_11089#1 CCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAA 377
************************************************************
consensus_11089#0 CCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGT 900
consensus_11089#1 CCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGT 437
************************************************************
consensus_11089#0 CTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGC 960
consensus_11089#1 CTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGC 497
************************************************************
consensus_11089#0 CAATGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAG 1020
consensus_11089#1 CAACGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAG 557
*** ********************************************************
consensus_11089#0 CCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGC 1080
consensus_11089#1 CCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGATGAGC 617
************************************************************
consensus_11089#0 AAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATA 1140
consensus_11089#1 AAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATA 677
************************************************************
consensus_11089#0 TCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATG 1200
consensus_11089#1 TCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATG 737
************************************************************
consensus_11089#0 TTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATT 1260
consensus_11089#1 TTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATT 797
************************************************************
consensus_11089#0 AGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCAC 1320
consensus_11089#1 AGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCATTTTCAGTGGGTGTATCAC 857
************************************************************
consensus_11089#0 CAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAA 1380
consensus_11089#1 CAATTATTAGAGCACAGACAAACGCGCTGTGTCTATCAGAGTAAAAGAAAGAATATGCAA 917
************************************************************
consensus_11089#0 CTGCCATATGGTTTAAAAAAAAAA 1404
consensus_11089#1 CTGCCATATAA------------- 928
*********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||