These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1993 fasta sequence [GAATGCCTCTGCACCACCTCTCCATTTATGGAGCCATCCTGATTGGACAAGGAAGCACAGGAAAGTAGCTGAGGAGCATAACCACACTAGCATAGGGAGGATCGCTTCCCATGTTGAAGAAGATAATCTATCAGATAACCTCCCTATGATGAAAGAAACTGAATCTTATGGTATACATAACTCTAGATCAGGGAAAGAGGAGAATGCAGGACAAACTTCATGCAATCTCAAAGGGACCAATCTATCAGATCTCCCTGTGAGGAGACAGGCTGAAGCTGGCAACAAACGAAATGTTGGACCAGGCAAAGAGAAAGAGACTACAGAGAAGACATCATGCGATGTCAGAGAGGTTATTCTATCAGATGATCGTCCTGTGAAGACACAAGCTGGATATGGACAAGTGAAAGCTAAAGAGTACCATAGATCCGATAGCCTTCCTGTGAAGAAACAAGCTGAGACTAATTACCAGCAAATCTCTCAATCAGGAAAGGAGAAAGAGCATAGCATGGATGAAAGCAATAGCACTCATAACAGGAGCAGGAAAAGAACCCCTGATCAGGTTGATGGGAGCCTCCCTCCAGAAAAACAAGTGGAAGTTGCTTATGAGGAAAGAATGGCTATTCCTATCAAGAAGAGTACTCACCAAGAAAAACAACTAGATGCAGGAGACAGATTAAATGCTCATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGAACAAGCGAACTCTGACATGAGCATGTCATCCTCTGACTCCAGTAATGCTCAAAACAAATCCAGAAGCGGTTCCCCTTTTATTCCAATTGGACACCCTGCTGATAAGAGTACAGGTCGAGATAGTTTTATTAGTTATCCTCCAAAAGAACATCTTGTCTCTAAGCAGGCTACTTATCAGGGCAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCCAATTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGTGAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGATAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGACAGGAACACTAATTCTCTTGAGAGCACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGATGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCCAAGAACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTCAGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTGCGAGTACACCATATAGCATTATGGACAAGTATGCTCCTGGA-TTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTACGCCCTAGGTCCAAGTGCATCTGG-AAGCTCGGTTATGGACAAGTATGCTCCACCTCTAGAGGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTTGGCC-TCGTAGCTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATG-CAGCGCTTGC-TTTTTTTTTTTCCTT-CTGAGAGATCTGCTGCCATGTTTTTTCTGCGTTCCATTTGATGAATACTAAAGT-GGATCACTTGTACAGGAATAGAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGC-TTACTAATGTAGTGTACACTGTGACCC-TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAAAAATGCCTGATTTTTTCCCCCTGAAGTTTCGTGTATAGGGAGCGACTTTGGCTGAGTTTGCAGCATTTTGAATGGAATGTTAACAG] [+] EMBL AK064570 [GAATGCCTCTGCACCACCTCTCCATTTATGGAGCCATCCTGATTGGACAAGGAAGCACAGGAAAGTAGCTGAGGAGCATAACCACACTAGCATAGGGAGGATCGCTTCCCATGTTGAAGAAGATAATCTATCAGATAACCTCCCTATGATGAAAGAAACTGAATCTTATGGTATACATAACTCTAGATCAGGGAAAGAGGAGAATGCAGGACAAACTTCATGCAATCTCAAAGGGACCAATCTATCAGATCTCCCTGTGAGGAGACAGGCTGAAGCTGGCAACAAACGAAATGTTGGACCAGGCAAAGAGAAAGAGACTACAGAGAAGACATCATGCGATGTCAGAGAGGTTATTCTATCAGATGATCGTCCTGTGAAGACACAAGCTGGATATGGACAAGTGAAAGCTAAAGAGTACCATAGATCCGATAGCCTTCCTGTGAAGAAACAAGCTGAGACTAATTACCAGCAAATCTCTCAATCAGGAAAGGAGAAAGAGCATAGCATGGATGAAAGCAATAGCACTCATAACAGGAGCAGGAAAAGAACCCCTGATCAGGTTGATGGGAGCCTCCCTCCAGAAAAACAAGTGGAAGTTGCTTATGAGGAAAGAATGGCTATTCCTATCAAGAAGAGTACTCACCAAGAAAAACAACTAGATGCAGGAGACAGATTAAATGCTCATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGAACAAGCGAACTCTGACATGAGCATGTCATCCTCTGACTCCAGTAATGCTCAAAACAAATCCAGAAGCGGTTCCCCTTTTATTCCAATTGGACACCCTGCTGATAAGAGTACAGGTCGAGATAGTTTTATTAGTTATCCTCCAAAAGAACATCTTGTCTCTAAGCAGGCTACTTATCAGGGCAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCCAATTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGTGAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGATAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGACAGGAACACTAATTCTCTTGAGAGCACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGATGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCCAAGAACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTCAGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTGCGAGTACACCATATAGCATTATGGACAAGTATGCTCCTGGA TTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTACGCCCTGGTTCCAAGTGCATCTGG AAGCTCGGTTATGGACAAGTATGCTCCACCTTTAGAGGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTTGGCC TCGTAGCTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATG CAGCGCTTGC TTTTTTTTTTCCTT CTGAGAGATCTGCTGCCATGTTATTTCTGCGTTCCATTTGATGAATACTAAAGT GGATCACTTGTACAGGAATAGAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACACTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAATCCTGCCTGATTTTTTCCCCCTGAAGTTTCGTGTATAGGGAGCGACTTTGGCTGAGTTTGCAGCATTTTGAATGGAATGTTAACAG] [+] EMBL D42307 [ TTAAATCCT ATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGAACAAGCGAACTCTGACATGAGCATGTCATCCTCTGGCTCCAGTAATGCTCAAAACAAATCCAGAGGGGGT ] [+] EMBL BE040149 [ TTGTCTCTAAGCAGGCTACTTATCAGGGCAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCCATTTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGTGAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGATAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGAGAGGAACACTAATTCTCTTGAGAGCACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGATGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCTAAGAACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTCAGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTACGAGTACACCATATAGCATTATGGACAAGTATGCTCCTGGA TTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTACGCCCTANGTCCAAGTGCATCTGGAAAGCTC GTTATGGACAAGTATGCTCCACCTCTAGAGGATACAAACTACAGTGCACGAAGGGTTTCACAATACCCGTACCGACAGCTAGGCTCTTCTTGTTGGGGGTGGCCTTCG AGCTGACCACAACTCAGTTTAACTGATCACCGTTTTGAATGTCATTGACGGCTGATGCCNNCGCTTGC TTTTTTTTTTTTCTTCCTGAAAAACCTGCTGCC TGTTTTTTTCGCGTCCCAATGGATGAAAACTAAAATGGGATCACTGGAACGGGAATA AAATCTTAACCTTCAAGAAAATGAACCAGAACCTAGCTTTCCTAAGGAGGTG ACACTGGGACCCTTACATTG CGAATGGCCAaaat ] [+] EMBL BI811988 [ GCTCCTGGATTTCTTGGCTCCAAGTGCACAAAGAAGCTCAGTTATGGACATGTAC CCCTAGGTCCAAGTGCATCTGG AAGCTCGGTTATGGACAAGTATGCTCCACCTCTAGAGGATAC ACTACAGTGCACGAGGGGTTCCAC ATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTT GCC TCGTA CTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATG CAGCGCTTGCTTTTTTTTTTTTCCTT CTGAGAGATCTGCTGCCATGTTTTTTCTGCGTTCCATTTGATGAATACTAAAGT GGATCACTTGTACAGGAATAAAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACACTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAaaaaaa ] [+] EMBL CF313889 [ TCCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACACTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTCGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAAAAA ] [-] EMBL CF313890 [ CCAAGAAAATGAGCAAGATCCTAGC TTACTAATGTAGTGTACCCTGTGACCC TAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTCGGGCAAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTTTACCAAAAAa ] consensusID : consensus_11094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 236 fasta sequence [TCCTTCTGAGAGATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTACAGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAAAAAAAAA] [-] EMBL CA761415 [TCCTTCTGAGAGATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTACAGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAAAAAAAAA] [-] EMBL CA761455 [TCCTTCTGAGAGATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTACAGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTGGGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11094#0 GAATGCCTCTGCACCACCTCTCCATTTATGGAGCCATCCTGATTGGACAAGGAAGCACAG 60 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 GAAAGTAGCTGAGGAGCATAACCACACTAGCATAGGGAGGATCGCTTCCCATGTTGAAGA 120 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 AGATAATCTATCAGATAACCTCCCTATGATGAAAGAAACTGAATCTTATGGTATACATAA 180 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 CTCTAGATCAGGGAAAGAGGAGAATGCAGGACAAACTTCATGCAATCTCAAAGGGACCAA 240 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TCTATCAGATCTCCCTGTGAGGAGACAGGCTGAAGCTGGCAACAAACGAAATGTTGGACC 300 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 AGGCAAAGAGAAAGAGACTACAGAGAAGACATCATGCGATGTCAGAGAGGTTATTCTATC 360 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 AGATGATCGTCCTGTGAAGACACAAGCTGGATATGGACAAGTGAAAGCTAAAGAGTACCA 420 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TAGATCCGATAGCCTTCCTGTGAAGAAACAAGCTGAGACTAATTACCAGCAAATCTCTCA 480 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 ATCAGGAAAGGAGAAAGAGCATAGCATGGATGAAAGCAATAGCACTCATAACAGGAGCAG 540 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 GAAAAGAACCCCTGATCAGGTTGATGGGAGCCTCCCTCCAGAAAAACAAGTGGAAGTTGC 600 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TTATGAGGAAAGAATGGCTATTCCTATCAAGAAGAGTACTCACCAAGAAAAACAACTAGA 660 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TGCAGGAGACAGATTAAATGCTCATAGAGGATCAGAGATTATGGGTGCCAAATTCACAGA 720 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 ACAAGCGAACTCTGACATGAGCATGTCATCCTCTGACTCCAGTAATGCTCAAAACAAATC 780 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 CAGAAGCGGTTCCCCTTTTATTCCAATTGGACACCCTGCTGATAAGAGTACAGGTCGAGA 840 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TAGTTTTATTAGTTATCCTCCAAAAGAACATCTTGTCTCTAAGCAGGCTACTTATCAGGG 900 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 CAGATATTTAGCAAGCAATAATGAATGCAACAATGCATTTGAAGGGAAGATTGATCCTCC 960 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 AATTCATACCAATATCGATGATATCTCCAGGAAGTTCAGCCCTGGTACTGACTTCGAAGT 1020 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 GAACAGGCAGCATTTCACTGCCCCAACTGGCAACGTGTACAGTTTGCAATCTCTAAGAGA 1080 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TAGTGACAGGTTTTATAGGACGCAGCGCTCAGAAGACAGGAACACTAATTCTCTTGAGAG 1140 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 CACAACTGGTGATGCACCTTTGCATGGACACCCCACAAGGTACAGTCGACAAGTTGGTGA 1200 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TGATAATTATCTACAAACCAGTAGGGTCCCATCAACATTGCATGAGCAGGCACATCCAAG 1260 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 AACGCATGTTGGACATGCTGATGGTTACTTACAGACAAGTCAATACTCCCTTGGATCTTC 1320 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 AGGTGCTACATATGGTCAGCAAACATCTTCATATGGACTCCCCGGTGCGAGTACACCATA 1380 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TAGCATTATGGACAAGTATGCTCCTGGATTCTTGGCTCCAAGTGCACAAAGAAGCTCAGT 1440 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TATGGACATGTACGCCCTAGGTCCAAGTGCATCTGGAAGCTCGGTTATGGACAAGTATGC 1500 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 TCCACCTCTAGAGGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACA 1560 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 GCTAGGCTCTTCTGGTGGGGGTTGGCCTCGTAGCTGACCACACTTCAGTTTACCTGATCA 1620 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 CCGTTTTGAATGTCATTGACGGCTGATGCAGCGCTTGCTTTTTTTTTTTCCTTCTGAGAG 1680 consensus_11094#1 ------------------------------------------------TCCTTCTGAGAG 12 ************ consensus_11094#0 ATCTGCTGCCATGTTTTTTCTGCGTTCCATTTGATGAATACTAAAGTGGATCACTTGTAC 1740 consensus_11094#1 ATCTGCTGCCATGTTTTTTTTGCGCTCCATTTGATGAATACTAAAGTGGATCCCTTGTAC 72 ******************* **** *************************** ******* consensus_11094#0 AGGAATAGAAATCTCACCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGT 1800 consensus_11094#1 AGGAATAAAAATCTCCCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGT 132 ******* ******* ******************************************** consensus_11094#0 ACACTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCAAGTG 1860 consensus_11094#1 ACCCTGTGACCCTAGACTGACGAATGCCCAGATTCCAGTATGCTGGTTGTTGGGCTAGTG 192 ** **************************************************** **** consensus_11094#0 GGTAATCCATATGGTTTCGAATTTTTGTGATATTTCAGCTCTAACAAAAATGCCTGATTT 1920 consensus_11094#1 GGTAATCCATATGGTTTCGAATTTTTGTGATAAAAAA-----AAAAAAA----------- 236 ******************************** * ** **** consensus_11094#0 TTTCCCCCTGAAGTTTCGTGTATAGGGAGCGACTTTGGCTGAGTTTGCAGCATTTTGAAT 1980 consensus_11094#1 ------------------------------------------------------------ consensus_11094#0 GGAATGTTAACAG 1993 consensus_11094#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||