These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1168 fasta sequence [AGAGACTTGTTAATGATTGTAATATTCCTACTACTAGCTAGTTAAGTATAAGCATGATACATTGCACATTATACTTCATATATAGTATTATAATTAGCTTATCTTGTCGTGTGTTTATGCCTTGATGCAAGCTATAGCTCCTGGCTCTGAAACAATAGTTTTAAGAAATATATAATTTATGGCGTGCAACTCCTATTCTTAGAAGTGTCCACCTGCCACCGCCATGGCACGTGCGTACGTGAAACTGACGTAATATTGAGCTGGCAGAAGTAGCAGAGCAACTAGATAGACCAGCAGCACCCACATGGATATTGGTGGGCAACGCATGCAGCTTAATTCAACGTGCATGATGCCACTTGTGATATCTAGCTACTTGCTCAACGTCCAAAAGATGCAAAACTTGTTGTATGATATGATGCTGCCATGATTGGCTTATCATTTGATGTAATAGTCCCCGTTGTTTATCTTTTCTAATGCCATGTGTATATATGATTCTGTCAGTCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACTACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGAGCTGCTGCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCTGTCCCAACTGCAAGTTCGCGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAAAAAAAAAAAAA] [+] EMBL AK108229 [AGAGACTTGTTAATGATTGTAATATTCCTACTACTAGCTAGTTAAGTATAAGCATGATACATTGCACATTATACTTCATATATAGTATTATAATTAGCTTATCTTGTCGTGTGTTTATGCCTTGATGCAAGCTATAGCTCCTGGCTCTGAAACAATAGTTTTAAGAAATATATAATTTATGGCGTGCAACTCCTATTCTTAGAAGTGTCCACCTGCCACCGCCATGGCACGTGCGTACGTGAAACTGACGTAATATTGAGCTGGCAGAAGTAGCAGAGCAACTAGATAGACCAGCAGCACCCACATGGATATTGGTGGGCAACGCATGCAGCTTAATTCAACGTGCATGATGCCACTTGTGATATCTAGCTACTTGCTCAACGTCCAAAAGATGCAAAACTTGTTGTATGATATGATGCTGCCATGATTGGCTTATCATTTGATGTAATAGTCCCCGTTGTTTATCTTTTCTAATGCCATGTGTATATATGATTCTGTCAGTCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACTACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGAGCTGCTGCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCTGTCCCAACTGCAAGTTCGCGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATT ] [-] EMBL CF335570 [ GGAGGAAGCACCGGAGCTGCTGCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAAAAAAAAAAAAA] consensusID : consensus_11095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1001 fasta sequence [GGAGTAGAAAACTTGTGTGTGTATATAAGAGCAGGAGCTAGCATCATCAGCCAAGATGACCACTGAATTCCTTAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC-GT-GAACCTGGAGCTCAACATCTCGAC-TACCCAGCCAACCGTC-GTCG-TCGTCCCCACCATTATCGA-TGGAGGAAGCACCGG-AGCTGCTGCT-ACT-CCAGTT--GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATN-GTGGCCGTGCCTTGTGTCAATTGCCACCTC-CTCGTCATGCTCTGCAAGTCCTCCCCATCCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCCACCGCCNGCCGGCCCTGCCGCACCGCAAGCTNGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAGCTAGTTACTAGAAAAAAA] [+] EMBL CF335569 [GGAGTAGAAAACTTGTGTGTGTATATAAGAGCAGGAGCTAGCATCATCAGCCAAGATGACCACTGAATTCCTTAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC GT GAACCTGGAGCTCAACATCTCGAC TACCCAGCCAACCGTC GTCG TCGTCCCCACCATTATCGA TGGAGGAAGCACCGG AGCTGCTGCT ACT CCAGTT GCTGTTG ] [+] EMBL CF333400 [ AATTCCTTAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC GT GAACCTGGAGCTCAACATCTCGAC TACCCAGCCAACCGTCNGTCG TCGTCCCCACCATTATCGA TGGAGGAAGCACCGG AGCTGCTGCT ACT CCAGTT GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATNGGTGGCCGTGCCTTGTGTCAATTGCCACCTC CTCGTCATGCTCTGCAAGTCCTCC ] [+] EMBL C74226 [ AGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGGGCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATCGTCGGAGTCAGACGGCAGCTCCAGGAAGAAGAGGAAGCACTTCACCTGGGAGGAGCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCTNTGGAACCTGGAGCTCAACATCTCGACTTACCCAGCCAANCGTC GTCGTTGGTCCCCACCATTATCGATTGGAGGAAGCACCGG AGCTGCTGCTAATT CCAGTTTGGCTGTTG ] [+] EMBL AU031288 [ GCCCGTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCCCTGCCCCTCGACTGGGAGCAGTGCCTTGACCTGCAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTGAAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGC GT GAACCTGGAGCTCAACATCTCGAC TACCCAGCCAACCGTC GTCG TCGTCCCCACCATTATCGA TGGAGGAAGCACCGG AGCTGCTGCT ACT CCAGTT GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCANCTCTGGACCTNGAGGCAACATN GTGGCCGTGCCTTGTG ] [-] EMBL CF333401 [ GGAGGAAGCACCGGAAGCTGCTGCT ACTCCCAGTT GCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCAACATG GTGGCCGTGCCTTGTGTCAATTGCCACCTCNCTCGTCATGCTCTGCAAGTCCTCCCCATCCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCCACCGCCNGCCGGCCCTGCCGCACCGCAAGCTNGACGCCGTCAAGCCGCTGGAGACCTTGAGCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATAGTAATGGTGATAGATGTGCTAGCTAGTTACTAGAAAAAAA] consensusID : consensus_11095#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [TTGAGCCTTCTCCATTAGGGCAGTCTAGCTNGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGANTNTTGATCACTATGTTAATCCNGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGNGGCNATNTAAATGTNTTNTTATTANTNAAAANAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031287 [TTGAGCCTTCTCCATTAGGGCAGTCTAGCTNGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGANTNTTGATCACTATGTTAATCCNGGGACTTTGACATAGAATGGTGAGGGTGAGGAGGNGGCNATNTAAATGTNTTNTTATTANTNAAAANAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11095#0 AGAGACTTGTTAATGATTGTAATATTCCTACTACTAGCTAGTTAAGTATAAGCATGATAC 60 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 ------------------------------------------------------------ consensus_11095#0 ATTGCACATTATACTTCATATATAGTATTATAATTAGCTTATCTTGTCGTGTGTTTATGC 120 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 ------------------------------------------------------------ consensus_11095#0 CTTGATGCAAGCTATAGCTCCTGGCTCTGAAACAATAGTTTTAAGAAATATATAATTTAT 180 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 --------------------------------------------GGAGTAGAAAACTTGT 16 consensus_11095#0 GGCGTGCAACTCCTATTCTTAGAAGTGTCCACCTGCCACCGCCATGGCACGTGCGTACGT 240 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 G-TGTGTA---TATAAGAGCAGGAGCTAGCATCATCAGCCAAGATGACCACTGAATTCCT 72 consensus_11095#0 GAAACTGACGTAATAT-TGAGCTGGCAGAAGTAGCAGA-GCAACTAGATAGACCAGCAGC 298 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 TAGAGTGGAGAAGTACCTGAGTGTGAAGAGGATGGAGCTGCAGCCGGAGCTCTCACTAGG 132 consensus_11095#0 ACCCACATGGATATTGGTGGGCAACGCATGCAGCTTAATTCAACGTGCATGATGCCACTT 358 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 GCCGACGTGGCCGGCGCCAGGCTTCGTCTCCTCCACCACCAAGAGCACCAAGAGCTCATC 192 consensus_11095#0 GTGATATCTAGCTACTTGCTCAACGTCCAAAAGATGCAAAACTTGTTGTATGATATGATG 418 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 GTCGGAGTCAGACGGCAGCTCCAGG--AAGAAGAGGAAGCACTTCACCTGGGAGGAGCCC 250 consensus_11095#0 CTGCCATG-ATTGGCTTATCATTTGATGTAATAGTCCCCGTTGTTTATCTTTTCTAATGC 477 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 GTGTCGCACGCCAACCTGGAGCTCCAGCTCAATGACCCC-CTGCCCCTCGACTGGGA-GC 308 consensus_11095#0 CATGTGTATATATGATTCTGTCAGTCTGGAAGGATGTATTACCTGAACAGGAAGACCTTG 537 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 AGTGCCTTGACCTG-------CAATCTGGAAGGATGTATTACCTGAACAGGAAGACCTTG 361 consensus_11095#0 AAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACT 597 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 AAGAAAAGCTGGATCAGGCCCAAGGAGCAGAGCGTGAACCTGGAGCTCAACATCTCGACT 421 consensus_11095#0 ACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGAGCTGCT 657 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 ACCCAGCCAACCGTCGTCGTCGTCCCCACCATTATCGATGGAGGAAGCACCGGAGCTGCT 481 consensus_11095#0 GCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTC 717 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 GCTACTCCAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTC 541 consensus_11095#0 AGCTCTGGACCTGGAGGCAACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTC 777 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 AGCTCTGGACCTGGAGGCAACATNGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTC 601 consensus_11095#0 ATGCTCTGCAAGTCCTCCCCATCC-TGTCCCAACTGCAAGTTCGCGCAGCCGTTGGCGCC 836 consensus_11095#2 ------------------------------------------------------------ consensus_11095#1 ATGCTCTGCAAGTCCTCCCCATCCCTGTCCCAACTGCAAGTTCGTGCAGCCGTTGGCGCC 661 consensus_11095#0 ACCGCCG-CCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGA 895 consensus_11095#2 --------------------------------------------------------TTGA 4 consensus_11095#1 ACCGCCNGCCGGCCCTGCCGCACCGCAAGCTNGACGCCGTCAAGCCGCTGGAGACCTTGA 721 **** consensus_11095#0 GCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCC 955 consensus_11095#2 GCCTTCTCCATTAGGGCAGTCTAGCTNGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCC 64 consensus_11095#1 GCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCC 781 ************************** ********************************* consensus_11095#0 CCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTA 1015 consensus_11095#2 CCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTA 124 consensus_11095#1 CCGTGCTCAAAGGGCAGGTGGCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTA 841 ************************************************************ consensus_11095#0 GTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAAT 1075 consensus_11095#2 GTACTGTTTGAGGGAAGGANTNTTGATCACTATGTTAATCCNGGGACTTTGACATAGAAT 184 consensus_11095#1 GTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATCCAGGGACTTTGACATAGAAT 901 ******************* * ******************* ****************** consensus_11095#0 GGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATA 1135 consensus_11095#2 GGTGAGGGTGAGGAGGNGGCNATNTAAATGTNTTNTTATTANTNAA--AANAAAAAAAAA 242 consensus_11095#1 GGTGAGGGTGAGGAGGAGGCAATATAAATGTATTATTATTAATCAATCAATTAGTTAATA 961 **************** *** ** ******* ** ****** * ** ** * ** * consensus_11095#0 GTAATGGTGATAGATGTGCTA-------AAAAAAAAAAAA 1168 consensus_11095#2 ANAAAAAAAAAAAA------A-------AAAAAAAAAAA- 268 consensus_11095#1 GTAATGGTGATAGATGTGCTAGCTAGTTACTAGAAAAAAA 1001 ** * * * * * * ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||