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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 735 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAGGCTCTCTCTTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGAC-AAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAA-GACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTT-CAGCCTCTGCGTGTATATATACCTTCCAGGCATCACAATGT-ACTGT-CTCGACCCAATCATGA-CAACGGCG-AAG-ATGTCGGCGTCCTTCCCGGCGCCCGCGG-CTGCGATCTGCGCCTCCACA--GGCTCCGGCACCGCAGCCTCCTCTTCTTCAACCTCCTCCTCCTCTACCGCCTCCGCCTC]
[+] EMBL CA759565 [TTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAGGCTCTCTCTTTTTTTAAGCACAGGGAAAATAATACAGTTGGCTAGGATACCCAATATCAGAATGAACAAAACAGATGGGGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCTAAAACTGTTCTTCCAGAC AAGAAAAGGGAGCACTCGTATCCTAATGGACTACCAGTTGTTTGGAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGGGTTTGGCTGTCTGGGACCAAGTTTCCTCTGGGACTTCTTCTTCTTCTTATATTGGAA GACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGGCTCTAGTTGATACCAGAAATACCTTGGTTAATATTATCTGATCATTGACATTGGCGCCTTT CAGCCTCTGCGTGTATATATACCTTCCAGGCATCACAATGT ACTGT CTCGACCCAATCATGA CAACGGCGAAAGAATGTCGGCGTCCTTCCCGGCGCCCGCGGNNTGCGATCTGCGCCTCCACA GGCT ]
[-] EMBL BQ906938 [ TTTTTGGTAAAATGCTCTCTCTTTTTTTAAGCNCAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGAC AAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAACGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTTACAGCCTCTGCGTGTATATATACCTTCCAGGCATCACAATGTAACTGTCCTCGAACCAATCATGACCAACGG G AAG ATGTCGGGGTCCTTCCCGG GCCCG GG TGNGATCTGGGCCTCCACAGNGGCTCGGCCACg ]
[-] EMBL AK064863 [ TCTCTCTTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGAC AAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAA GACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTT CAGCCTCTGCGTGTATATATACCTTCCAGGCATCACAATGT ACTGT CTCGACCCAATCATGA CAACGGCG AAG ATGTCGGCGTCCTTCCCGGCGCCCGCGG CTGCGATCTGCGCCTCCACA GGCTCCGGCACCGCAGCCTCCTCTTCTTCAACCTCCT ]
[-] EMBL AK104384 [ TCTCTCTTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGAC AAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAA GACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTT CAGCCTCTGCGTGTATATATACCTTCCAGGCATCACAATGT ACTGT CTCGACCCAATCATGA CAACGGCG AAG ATGTCGGCGTCCTTCCCGGCGCCCGCGG CTGCGATCTGCGCCTCCACA GGCTCCGGCACCGCAGCCTCCTCTTCTTCAACCTCCT ]
[-] EMBL CF333138 [ CTCTCTTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGAC AAGAAAAGGTAGCACTCGTATTCTAACGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAA GACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGC ]
[-] EMBL BF430734 [ CAGACAAAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTACCAATTGCTCTTAAGGTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAA GACTATCACTTTATCATCCCGTCCCTGTTCCTCACCCGCTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTT CAGCCTATGCGTGTATATATACCTTCCAGGCATCACAATGT ACTGT CTCGACCCAATCATGA CAACGGCG AAG ATGTCGGCGTCCTTCCCGGCGCCCGCGG CTGCGATCTGCGCCTCCACA GGCTCCGGCAACGCAGCCTCCTCTTCTTCAACCTCCTCCTCCTCTACCGCCTCCGCCTC]
consensusID : consensus_11097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[GTCACAAAAACTGTATAAAGTTACACAAACCAAAGCTAAAACATCCGTATCGTGGTAAAATGCTCTCTCTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGACAAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTC]
[-] EMBL AK062182 [GTCACAAAAACTGTATAAAGTTACACAAACCAAAGCTAAAACATCCGTATCGTGGTAAAATGCTCTCTCTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGACAAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTC]
consensusID : consensus_11097#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence
[TGACAGCTCTTCAGCCTCCAATTGTGCCACACTCTTGAATACGTCCTGGTGAAGACTTCTTCTTCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACGGCATTGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTTCAGCCTCTGCGTGTATATATACTTCCAGGCA]
[-] EMBL CA882813 [TGACAGCTCTTCAGCCTCCAATTGTGCCACACTCTTGAATACGTCCTGGTGAAGACTTCTTCTTCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACGGCATTGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTTCAGCCTCTGCGTGTATATATACTTCCAGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11097#0 ----------------------------TTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAA 32
consensus_11097#1 GTCACAAAAACTGTATAAAGTTACACAAACCAAAGCTAAAACATCCGTATCGTGGTAAAA 60
consensus_11097#2 ------------------------------------------------------------
consensus_11097#0 GGCTCTCTCTTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCA 92
consensus_11097#1 TGCTCTCTCTTTTTT-AAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCA 119
consensus_11097#2 ------------------------------------------------------------
consensus_11097#0 GAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCA 152
consensus_11097#1 GAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCA 179
consensus_11097#2 ------------------------------------------------------------
consensus_11097#0 CTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGACAAGAAAAGGT 212
consensus_11097#1 CTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGACAAGAAAAGGT 239
consensus_11097#2 ------------------------------------------------------------
consensus_11097#0 AGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTT 272
consensus_11097#1 AGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTT 299
consensus_11097#2 ------------------------------------------------------------
consensus_11097#0 AAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGG 332
consensus_11097#1 AAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGG 359
consensus_11097#2 ---------------------------------------------------------TGA 3
*
consensus_11097#0 TAATTCTTAACCTTGTGTTTG-GCTGT--CTGTGACCAAGTTTCCTCTGGTACTTCTTCT 389
consensus_11097#1 TAATTCTTAACCTTGTGTTTG-GCTGT--CTGTGACCAAGTTTCCTCTGGTACTTCTTCT 416
consensus_11097#2 CAGCTCTTCAGCCTCCAATTGTGCCACACTCTTGAATACGTCCTGGTGAAGACTTCTTCT 63
* **** * * * *** ** *** * ** *********
consensus_11097#0 TCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCAT 449
consensus_11097#1 TCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCAT 476
consensus_11097#2 TCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCAT 123
************************************************************
consensus_11097#0 GAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCA 509
consensus_11097#1 GAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTC------------ 524
consensus_11097#2 GAACAGCAGCATTGGTCACCACGGCATTGCCAATGTAAGCCTTGTCTCTAGTTGATACCA 183
********************** * *********************
consensus_11097#0 GTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTTCAGCCTCTGCGTGT 569
consensus_11097#1 ------------------------------------------------------------
consensus_11097#2 GTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTTCAGCCTCTGCGTGT 243
consensus_11097#0 ATATATACCTTCCAGGCATCACAATGTACTGTCTCGACCCAATCATGACAACGGCGAAGA 629
consensus_11097#1 ------------------------------------------------------------
consensus_11097#2 ATATATACTTCCAGGCA------------------------------------------- 260
consensus_11097#0 TGTCGGCGTCCTTCCCGGCGCCCGCGGCTGCGATCTGCGCCTCCACAGGCTCCGGCACCG 689
consensus_11097#1 ------------------------------------------------------------
consensus_11097#2 ------------------------------------------------------------
consensus_11097#0 CAGCCTCCTCTTCTTCAACCTCCTCCTCCTCTACCGCCTCCGCCTC 735
consensus_11097#1 ----------------------------------------------
consensus_11097#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||