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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1140 fasta sequence
[TGGACCTGAATGGACTGAAGGAGTAGAAAAAACTCAAAAGTGTATCAAGGATAAGCAGCCGAGGAAAAGGTATTTGACGGAAGCCTGCGATGTCTGCGGCGCCGGCTGCGAGCGGCTGGTTGCGGCCGTCCGCGACCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACCCCGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT-----GGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTCAATTGACGAGGAAACCCTGCAGCGTAATTTACAGACAGCCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAG-CTTCCCTCCTTGCAGCAAACACACGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTA-AACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACATGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTTTTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATATGACTAGCTATTTTTCCATTTCTTTTTGGCGGCTAACTGGGAATGGACTTGATCTGCAAGTAACTCGTACCAGGCTACTTCACTGAAACAAAACCTGATTTGTCAATTGTCATGTAAAAAA]
[+] EMBL CF332536 [TGGACCTGAATGGACTGAAGGAGTAGAAAAAACTCAAAAGTGTATCAAGGATAAGCAGCCGAGGAAAAGGTATTTGACGGAAGCCTGCGATGTCTGCGGCGCCGGCTGCGAGCGGCTGGTTGCGGCCGTCCGCGACCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACCCCGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTCAATTGACGAGGAAACCCTGCAGCGTAATTTACAGACAGCCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAG CTTCCCTCCTTGCAGCAAACACACGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTA AACA ]
[+] EMBL AK099571 [ AGGATAAGCAGCCGAGGAAAAGGTATTTGACGGAAGCCTGCGATGTCTGCGGCGCCGGCTGCGAGCGGCTGGTTGCGGCCGTCCGCGACCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACCCCGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT GGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTCAATTGACGAGGAAACCCTGCAGCGTAATTTACAGACAGCCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAG CTTCCCTCCTTGCAGCAAACACACGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTA AACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACATGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTTTTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATATGACTAGCTATTTTTCCATTTCTTTTTGGCGGCTAACTGGGAATGGACTTGATCTGCAAGTAACTCGTACCAGGC ]
[+] EMBL CF334220 [ CGATGTCTGCGGCGCCGGCTGCGAGCGGCTGGTTGCGGCCGTCCGCGACCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACCACGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACAT GGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTCAATTGACGAGGAAACCCTGCAGCGTAATTCACAGACAGCCATCCAGGAAGAAGACTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAG CTTCCCTCCTTGCAGCAAACACACGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGT ]
[+] EMBL CA753813 [ CTGCGAGCGGCTGGTTGCGGCCGTCCGCGACCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACCCCGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATTGCAGGGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTCAATTGACGAGGAAACCCTGCAGCGTAATTTACAGACAGCCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAG CTTCCCTCCTTGCAGCAAACACACGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTANNACATTGATCTG ANAATGTAGAGGTTCATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAAGACATGG ]
[+] EMBL C26282 [ ntcagagaCCGTCCGCAACCGC NGGNTNTNCAAGGCGGGGTTNTTCACCGATTACNCCAACCCCGCCACTACGCGGTTCTNCATCGGCCGGAG GGAGCGGTGCGCCGAGAAACAT GGCTTCAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTNCTCATGTTAAAANTGGAGATGCTGATGGTTACCCAACGACTGAAGATTTGTAAATTNACGAGGAAACCCTGCAGCGTAATTTACAGACAGCCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAGNTTTCCCTCCTTGCAG AAACACACGGNTTTAAAATGC ]
[+] EMBL AU166404 [ GGTTAAGACCAAAGGAAGAACATGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTTTTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATATGACTAGCTATTTTTCCATTTCTTTTTGGCGGCTAACTGGGAATGGACTTGATCTGCAAGTAACTCGTACCAGGCTACTTCACTGAAACAAAACCTGATTTGTCAATTGTCATGTAAAAAA]
consensusID : consensus_11102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAGCTTCCCTCCTTGCAGCAAACACACGGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGCGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACTTGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAAAAAAAAAAAAAAAACACTGTCATGCCG]
[-] EMBL CF332537 [CCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCATCCTCCATGAAGATACCAAAGCTTCCCTCCTTGCAGCAAACACACGGGTTTTACAATGCTTTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGCGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACTTGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAAAAAAAAAAAAAAAACACTGTCATGCCG]
consensusID : consensus_11102#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[AGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACATGGGGGAAGCAAGTCGCCACAAATGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAACCCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTTTTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATATGACTAGCTATTTTTCCAAAAAAAAAAAAA]
[-] EMBL CF334221 [AGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATATGTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAGATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACATGGGGGAAGCAAGTCGCCACAAATGTCTTCGAGAAGGTTGATGGCACATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAACCCTTAGTTGATTTGGCATGGAAATTTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTTTTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATATGACTAGCTATTTTTCCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11102#0 TGGACCTGAATGGACTGAAGGAGTAGAAAAAACTCAAAAGTGTATCAAGGATAAGCAGCC 60
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 GAGGAAAAGGTATTTGACGGAAGCCTGCGATGTCTGCGGCGCCGGCTGCGAGCGGCTGGT 120
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 TGCGGCCGTCCGCGACCGCGCGGCTCTGCGAGGCGGGGTTCTTCACCGATTACGCCAACC 180
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 CCGCCACTACGCGGATCTGCATCGGCCGGAGGCGGAGCGGTGCGCCGAGAAACATGGCTT 240
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 CAAGTTGCATCATCCAATTTGGGCCGATGCAAAATTGCTCATGTTAAAAGTGGAGATGCT 300
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 GATGGTTACCCAACGACTGAAGATTTGTCAATTGACGAGGAAACCCTGCAGCGTAATTTA 360
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 CAGACAGCCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGC 420
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------CCATCCAGGAAGAAGATTATTCCCGGGCTGCAAAGATAAGGGATGATCTGCGCA 54
consensus_11102#0 ATCCTCCATGAAGATACCAAAGCTTCCCTCCTTGCAGCAAACACACGGTTTTACAATGCT 480
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 TCCTCCATGAAGATACCAAAGCTTCCCTCCTTGCAGCAAACACACGGGTTTTACAATGCT 114
consensus_11102#0 TTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATAT 540
consensus_11102#2 ----AGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATAT 56
consensus_11102#1 TTCAAGAATGGCGATCTTGCAGCGATGTACTCTTTATGGGCTAAGGGTGACCATGTATAT 174
********************************************************
consensus_11102#0 GTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAG 600
consensus_11102#2 GTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAG 116
consensus_11102#1 GTTATCCATCCTGCTGCGGGTCGGATATCAGGTTATGACGTGGTCATGCAAAGCTGGGAG 234
************************************************************
consensus_11102#0 ATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTT 660
consensus_11102#2 ATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTT 176
consensus_11102#1 ATGGTATGTGGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTT 294
************************************************************
consensus_11102#0 CATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGA 720
consensus_11102#2 CATGTGCATGGTGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGA 236
consensus_11102#1 CATGTGCATGGCGACCTTGGTTACGTCACATGCTTGGAAGTGGTTAAGACCAAAGGAAGA 354
*********** ************************************************
consensus_11102#0 ACATGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATG 780
consensus_11102#2 ACATGGGGGAAGCAAGTCGCCACAAATGTCTTCGAGAAGGTTGATGGCACATGGCGCATG 296
consensus_11102#1 ACTTGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCACATGGCGCATG 414
** *********************** *********************************
consensus_11102#0 TGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAAT 840
consensus_11102#2 TGTGTTCACCATGCATCACACATAGAGGAATGAAACCCTTAGTTGATTTGGCATGGAAAT 356
consensus_11102#1 TGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAAT 474
*********************************** ************************
consensus_11102#0 TTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCAT 900
consensus_11102#2 TTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCAT 416
consensus_11102#1 TTTGCAGAAAAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCAT 534
************************************************************
consensus_11102#0 CATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTT 960
consensus_11102#2 CATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAACTGAATTTT 476
consensus_11102#1 CATTAGTCTATGTTTTCTCGAGTCAATTGTATCGATGCTTAAGTTTTCAAAAAAAAAAAA 594
*************************************************** **
consensus_11102#0 TTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATAT 1020
consensus_11102#2 TTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTGAGATTATATAT 536
consensus_11102#1 AAAAACACTGTCATGCCG------------------------------------------ 612
* **
consensus_11102#0 GACTAGCTATTTTTCCATTTCTTTTTGGCGGCTAACTGGGAATGGACTTGATCTGCAAGT 1080
consensus_11102#2 GACTAGCTATTTTTCCAAAAAAAAAAAAA------------------------------- 565
consensus_11102#1 ------------------------------------------------------------
consensus_11102#0 AACTCGTACCAGGCTACTTCACTGAAACAAAACCTGATTTGTCAATTGTCATGTAAAAAA 1140
consensus_11102#2 ------------------------------------------------------------
consensus_11102#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||