cluster # 11108

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Oryza sativa
cluster # 11108 cluster # 11108 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11108#0 length = 2212 sequences # 6

consensus_11108#1 length = 874 sequences # 2

consensusID : consensus_11108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2212
fasta sequence

                              [AAATCCACCACCGTCTCCCTCCTCGCCTCGTCCCCCGGCAGGCAAGGTCGGCACGCACCGGCCACCCACCCCCATTCCCAGATCCCCCGGCGCCGCCGCGGCCGCGCCATTCGCCGATTGCGTCGGCGTCGGCATTCCGTGTCGCGCGCCGCAATGCCGGCGTCGTCGTCCTTGTAGGTTGCCAGCCACAGCCAGGTAGGTAGGTGGGTGCGCGCGCGCGCGCCGCGGGCGGAGCCGCCGAGGAGGAGGAGAGAGATCGCTTTGGCGCGCGCCGTGGTGGTGGAGGGATATGCATTCCAAGCCCGAGGGGGACGCGGCGTCGGCGGCGGCGGCGGCGGAGGGTGGGTCCCCGCGATCCGGCTACTTCCGGCAGCGGAGCATGTACGCCGCGGATCCGGACGGGGTCGGCGCCGCCACCCCACGCAAGGCGTTCGACGTGGAGAACCCTCCCGGCGGCGCCGGGGGGCTCCGCCCGAGCGAGTCCGTCACCAAGCTGGAGTCGCTGGAGCGTGCGGAGCGCGCCGCGCTGGCGCCCGCGGTGGTGCTCAAGACGGGCTTCTACATCCTCGTCTGGTACGCCTTCAGTACCTGCCTCACGCTATACAACAAGACGCTGCTTGGCGACAAGCTGGGCAAGTTCCCGGCGCCGCTGCTGATGAACACCGTGCACTTCGCGCTGCAGGCGGGGCTCTCCAAGATCATAATGCTGTTCCAGACCAAAGGGGTGGAGAACGCGGTGGAGATGGGATGGAAGGATTACTTCATGAGAGGTTTGTATTCGTGCCAACTGCTCTGGGAACAGCATTGGACATCAACCTGAGCAATGCGTCTCTAGTGTTTATCTCGGTGACATTTGCTACCATGTGTAAATCAGCCTCCCCGATATTTCTTTTGATGTTTGCTTTTGCATTTAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAAAAGATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGGGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATCGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGGAGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTACTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAAAAAAAAAAAAAAA]

[+] EMBL AK106752             [AAATCCACCACCGTCTCCCTCCTCGCCTCGTCCCCCGGCAGGCAAGGTCGGCACGCACCGGCCACCCACCCCCATTCCCAGATCCCCCGGCGCCGCCGCGGCCGCGCCATTCGCCGATTGCGTCGGCGTCGGCATTCCGTGTCGCGCGCCGCAATGCCGGCGTCGTCGTCCTTGTAGGTTGCCAGCCACAGCCAGGTAGGTAGGTGGGTGCGCGCGCGCGCGCCGCGGGCGGAGCCGCCGAGGAGGAGGAGAGAGATCGCTTTGGCGCGCGCCGTGGTGGTGGAGGGATATGCATTCCAAGCCCGAGGGGGACGCGGCGTCGGCGGCGGCGGCGGCGGAGGGTGGGTCCCCGCGATCCGGCTACTTCCGGCAGCGGAGCATGTACGCCGCGGATCCGGACGGGGTCGGCGCCGCCACCCCACGCAAGGCGTTCGACGTGGAGAACCCTCCCGGCGGCGCCGGGGGGCTCCGCCCGAGCGAGTCCGTCACCAAGCTGGAGTCGCTGGAGCGTGCGGAGCGCGCCGCGCTGGCGCCCGCGGTGGTGCTCAAGACGGGCTTCTACATCCTCGTCTGGTACGCCTTCAGTACCTGCCTCACGCTATACAACAAGACGCTGCTTGGCGACAAGCTGGGCAAGTTCCCGGCGCCGCTGCTGATGAACACCGTGCACTTCGCGCTGCAGGCGGGGCTCTCCAAGATCATAATGCTGTTCCAGACCAAAGGGGTGGAGAACGCGGTGGAGATGGGATGGAAGGATTACTTCATGAGAGGTTTGTATTCGTGCCAACTGCTCTGGGAACAGCATTGGACATCAACCTGAGCAATGCGTCTCTAGTGTTTATCTCGGTGACATTTGCTACCATGTGTAAATCAGCCTCCCCGATATTTCTTTTGATGTTTGCTTTTGCATTTAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAAAAGATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGGGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATCGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGGAGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTACTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAA             ]
[+] EMBL AK072625             [                                                         CCGGCCACCCACCCCCATTCCCAGATCCCCCGGCGCCGCCGCGGCCGCGCCATTCGCCGATTGCGTCGGCGTCGGCATTCCGTGTCGCGCGCCGCAATGCCGGCGTCGTCGTCCTTGTAGGTTGCCAGCCACAGCCAGGTAGGTAGGTGGGTGCGCGCGCGCGCGCCGCGGGCGGAGCCGCCGAGGAGGAGGAGAGAGATCGCTTTGGCGCGCGCCGTGGTGGTGGAGGGATATGCATTCCAAGCCCGAGGGGGACGCGGCGTCGGCGGCGGCGGCGGCGGAGGGTGGGTCCCCGCGATCCGGCTACTTCCGGCAGCGGAGCATGTACGCCGCGGATCCGGACGGGGTCGGCGCCGCCACCCCACGCAAGGCGTTCGACGTGGAGAACCCTCCCGGCGGCGCCGGGGGGCTCCGCCCGAGCGAGTCCGTCACCAAGCTGGAGTCGCTGGAGCGTGCGGAGCGCGCCGCGCTGGCGCCCGCGGTGGTGCTCAAGACGGGCTTCTACATCCTCGTCTGGTACGCCTTCAGTACCTGCCTCACGCTATACAACAAGACGCTGCTTGGCGACAAGCTGGGCAAGTTCCCGGCGCCGCTGCTGATGAACACCGTGCACTTCGCGCTGCAGGCGGGGCTCTCCAAGATCATAATGCTGTTCCAGACCAAAGGGGTGGAGAACGCGGTGGAGATGGGATGGAAGGATTACTTCATGAGAG        TCGTGCCAACTGCTCTGGGAACAGCATTGGACATCAACCTGAGCAATGCGTCTCTAGTGTTTATCTCGGTGACATTTGCTACCATGTGTAAATCAGCCTCCCCGATATTTCTTTTGATGTTTGCTTTTGCATTTAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAAAAGATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATCGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGGAGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTACTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAA             ]
[-] EMBL CB659993             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATCGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGGAGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTACTGTAACACTTCCAGTCTACGTGGAATCACAAGTTTTAAA            ]
[-] EMBL CB659957             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATCGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTTTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACA                                                                                                                                                     ]
[-] EMBL CF303584             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGTACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTGATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAAATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATCGAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGGTATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACATGCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAGATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGGAGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTACTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAAAAAAAAAAAAAAA]
[-] EMBL CF304466             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTATATACTGTAACTTGTACTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAAAAAAAAAAAAAAA]




>consensus_11108#0
AAATCCACCACCGTCTCCCTCCTCGCCTCGTCCCCCGGCAGGCAAGGTCGGCACGCACCG
GCCACCCACCCCCATTCCCAGATCCCCCGGCGCCGCCGCGGCCGCGCCATTCGCCGATTG
CGTCGGCGTCGGCATTCCGTGTCGCGCGCCGCAATGCCGGCGTCGTCGTCCTTGTAGGTT
GCCAGCCACAGCCAGGTAGGTAGGTGGGTGCGCGCGCGCGCGCCGCGGGCGGAGCCGCCG
AGGAGGAGGAGAGAGATCGCTTTGGCGCGCGCCGTGGTGGTGGAGGGATATGCATTCCAA
GCCCGAGGGGGACGCGGCGTCGGCGGCGGCGGCGGCGGAGGGTGGGTCCCCGCGATCCGG
CTACTTCCGGCAGCGGAGCATGTACGCCGCGGATCCGGACGGGGTCGGCGCCGCCACCCC
ACGCAAGGCGTTCGACGTGGAGAACCCTCCCGGCGGCGCCGGGGGGCTCCGCCCGAGCGA
GTCCGTCACCAAGCTGGAGTCGCTGGAGCGTGCGGAGCGCGCCGCGCTGGCGCCCGCGGT
GGTGCTCAAGACGGGCTTCTACATCCTCGTCTGGTACGCCTTCAGTACCTGCCTCACGCT
ATACAACAAGACGCTGCTTGGCGACAAGCTGGGCAAGTTCCCGGCGCCGCTGCTGATGAA
CACCGTGCACTTCGCGCTGCAGGCGGGGCTCTCCAAGATCATAATGCTGTTCCAGACCAA
AGGGGTGGAGAACGCGGTGGAGATGGGATGGAAGGATTACTTCATGAGAGGTTTGTATTC
GTGCCAACTGCTCTGGGAACAGCATTGGACATCAACCTGAGCAATGCGTCTCTAGTGTTT
ATCTCGGTGACATTTGCTACCATGTGTAAATCAGCCTCCCCGATATTTCTTTTGATGTTT
GCTTTTGCATTTAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATC
TCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATT
TTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTG
CAAAAAGATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTG
ATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAG
AACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGA
GGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCT
ATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTT
TATTTCCATGATGGGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGA
GTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGAT
GAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAG
GACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTG
TCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGT
ACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTG
ATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAA
ATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATC
GAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGG
TATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACAT
GCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAG
ATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGG
AGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTA
CTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAAAAAAAAAAAAAAA

consensusID : consensus_11108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 874
fasta sequence

                              [TTTTATCTGTGATGGTTATTGGGGGTAATTGATTATTATTCTATCAAATTGATAAGATTTGTTCCTCGGTCTTTCGATGTCCTTTGTTTTTTATAGTATATTCTTCTAAATATTCCTTCTGTTTTACAAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGNCATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTA]

[+] EMBL CB659956             [TTTTATCTGTGATGGTTATTGGGGGTAATTGATTATTATTCTATCAAATTGATAAGATTTGTTCCTCGGTCTTTCGATGTCCTTTGTTTTTTATAGTATATTCTTCTAAATATTCCTTCTGTTTTACAAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGNCATGTGGCAACATTTTAACTGTCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTA]
[+] EMBL CB659991             [TTTTATCTGTGATGGTTATTGGGGGTAATTGATTATTATTCTATCAAATTGATAAGATTTGTTCCTCGGTCTTTCGATGTCCTTTGTTTTTTATAGTATATTCTTCTAAATATTCCTTCTGTTTTACAAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGA                                                                            ]




>consensus_11108#1
TTTTATCTGTGATGGTTATTGGGGGTAATTGATTATTATTCTATCAAATTGATAAGATTT
GTTCCTCGGTCTTTCGATGTCCTTTGTTTTTTATAGTATATTCTTCTAAATATTCCTTCT
GTTTTACAAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATCTCTA
CTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATTTTTG
TGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTGCAAA
TTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCAT
AGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATA
TTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTT
GGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGT
GACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCA
TGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGAGTTAGCTT
ATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAA
TTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGA
TGAGTTTCAGGATGAAGATACATAATTTTGNCATGTGGCAACATTTTAACTGTCACTTGG
ATTTTTATGCCCTGAAACCATTCATGTCTGCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11108#0      AAATCCACCACCGTCTCCCTCCTCGCCTCGTCCCCCGGCAGGCAAGGTCGGCACGCACCG 60
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GCCACCCACCCCCATTCCCAGATCCCCCGGCGCCGCCGCGGCCGCGCCATTCGCCGATTG 120
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      CGTCGGCGTCGGCATTCCGTGTCGCGCGCCGCAATGCCGGCGTCGTCGTCCTTGTAGGTT 180
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GCCAGCCACAGCCAGGTAGGTAGGTGGGTGCGCGCGCGCGCGCCGCGGGCGGAGCCGCCG 240
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      AGGAGGAGGAGAGAGATCGCTTTGGCGCGCGCCGTGGTGGTGGAGGGATATGCATTCCAA 300
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GCCCGAGGGGGACGCGGCGTCGGCGGCGGCGGCGGCGGAGGGTGGGTCCCCGCGATCCGG 360
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      CTACTTCCGGCAGCGGAGCATGTACGCCGCGGATCCGGACGGGGTCGGCGCCGCCACCCC 420
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      ACGCAAGGCGTTCGACGTGGAGAACCCTCCCGGCGGCGCCGGGGGGCTCCGCCCGAGCGA 480
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GTCCGTCACCAAGCTGGAGTCGCTGGAGCGTGCGGAGCGCGCCGCGCTGGCGCCCGCGGT 540
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GGTGCTCAAGACGGGCTTCTACATCCTCGTCTGGTACGCCTTCAGTACCTGCCTCACGCT 600
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      ATACAACAAGACGCTGCTTGGCGACAAGCTGGGCAAGTTCCCGGCGCCGCTGCTGATGAA 660
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      CACCGTGCACTTCGCGCTGCAGGCGGGGCTCTCCAAGATCATAATGCTGTTCCAGACCAA 720
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      AGGGGTGGAGAACGCGGTGGAGATGGGATGGAAGGATTACTTCATGAGAGGTTTGTATTC 780
consensus_11108#1      ----------------------------------------------------TTTTATCT 8
                                                                           ** ***  

consensus_11108#0      GTGCCAACTGCTCTGGGAACAGCATTGGACATCAACCTGAGCAATGCGTCTCTAGTGTTT 840
consensus_11108#1      GTGATGGTTATTGGGGGTAATTGATTATTATTCTATCAAATTGATAAGATTTGTTCCTCG 68
                       ***     *  *  *** *    ***     ** * *  *   **  *  *      *  

consensus_11108#0      ATCTCGGTGACATTTGCTACCATGTGTAAATCAGCCTCCCCGATATTTCTTTTGATGTTT 900
consensus_11108#1      GTCTTT-CGATGTCCTTTGTTTTTTATAGTATATTCTTCTAAATATTCCTTCTG------ 121
                        ***    **  *    *    * * **    *  ** *   ***** *** **      

consensus_11108#0      GCTTTTGCATTTAGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATC 960
consensus_11108#1      --TTTTACA---AGGTTGGAGAGTCCCAGCATCAAGCTTCTAGGAATAATTGTAGTTATC 176
                         **** **   ************************************************

consensus_11108#0      TCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATT 1020
consensus_11108#1      TCTACTGGGGTTCTCTTGACAGTTTCAAAGGAGACTGAGTTTGACTTCTGGGGATTCATT 236
                       ************************************************************

consensus_11108#0      TTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTG 1080
consensus_11108#1      TTTGTGACACTTGCCGCTGTTATGTCAGGATTTCGCTGGTCCATGACTCAGATACTGTTG 296
                       ************************************************************

consensus_11108#0      CAAAAAGATTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTG 1140
consensus_11108#1      CAAA----TTCTTATGGTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTG 352
                       ****    ****************************************************

consensus_11108#0      ATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAG 1200
consensus_11108#1      ATGGCCATAGCCACCATGGTACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAG 412
                       ************************************************************

consensus_11108#0      AACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGA 1260
consensus_11108#1      AACACATATTTTGATAGCCCGTGGCATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGA 472
                       ************************************************************

consensus_11108#0      GGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCT 1320
consensus_11108#1      GGAACCTTGGCCTTTTTCATGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCT 532
                       ************************************************************

consensus_11108#0      ATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTT 1380
consensus_11108#1      ATAACTGTGACAATAGCTGGGGTAGTAAAAGAAGCTGTAACCATCTTGGTCGCAGTATTT 592
                       ************************************************************

consensus_11108#0      TATTTCCATGATGGGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGA 1440
consensus_11108#1      TATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCCACCATCATGGTTGGA 652
                       ************* **********************************************

consensus_11108#0      GTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGAT 1500
consensus_11108#1      GTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAAAGGGTCACATAAATGAGGAT 712
                       ************************************************************

consensus_11108#0      GAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAG 1560
consensus_11108#1      GAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCATTCTAGATGACTTGGAG 772
                       ************************************************************

consensus_11108#0      GACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCAACATTTTAACTG 1620
consensus_11108#1      GACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGNCATGTGGCAACATTTTAACTG 832
                       **************************************  ********************

consensus_11108#0      TCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTATTGATTGAAACTATAAGT 1680
consensus_11108#1      TCACTTGGATTTTTATGCCCTGAAACCATTCATGTCTGCTTA------------------ 874
                       ******************************************                  

consensus_11108#0      ACTTATGGATGTTTCCACTTAAACGAGGTGTCACGGACAAGGGCACTGCTAGACTTGCTG 1740
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      ATGTTCTGCAACCAAACTTAAAAATTATCTGCCGGAGCTTGTCCGTCTCCAAACAATGAA 1800
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      ATGGTTTCTCACTTCTCATCCTTCATTAAATAGCCAGGCAAACTAAGAGCTAACTTCATC 1860
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GAAATCCCCATTTTTGAGAAGATTGGCAGCAGTTGAAATTGTTATGGCTGTTTATATTGG 1920
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      TATTGCCTGAGAATGGACGTCATTTACGTGTTTTTCTTCTCTTTGTGCGAGCTGGAACAT 1980
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      GCACATATTCATTCTTAAACCTCCACATTTTTGGTGCCTAGGAATATTCATTCTATATAG 2040
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      ATCAAATTGTAAGAGTTACCACACATACCTCCATATTTGCTGTTCCCTTGAAAGTTAGGG 2100
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      AGCAGCCTTTTGATTGTTTGTATTTGTAGAATTGTAGCATGTTATATACTGTAACTTGTA 2160
consensus_11108#1      ------------------------------------------------------------
                                                                                   

consensus_11108#0      CTGTAACACTTCCAGTCTACTTGGAATCACAAGTTTTAAAAAAAAAAAAAAA 2212
consensus_11108#1      ----------------------------------------------------