Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11117 cluster # 11117       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11117#0 length = 1292 sequences # 7  
consensus_11117#1 length = 344 sequences # 1  

consensusID : consensus_11117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1292
fasta sequence
                              [GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG-GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG-TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG-TA-CGACAAGGATCAGGAC-ACATTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCA-CCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC-ACGCCAGAAAATGTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG-TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTAAAAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF313830             [GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATGNGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA758943             [      gtgccgcATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK102648             [                  TCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG TA CGACAAGGATCAGGAC ACATTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCA CCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC ACGCCAGAAAATGTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCT                                                                                                                                                          ]
[+] EMBL OSC477               [                                   TCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCC GNCCGNCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATNACCAGCTCGGCGGCGATCGTGTTGGTGCATGCGGCG CACCCACAGGT CNG GCANGTTACCGACAAGGATCAGGACAACTTTCCGCCATGTGGTGCTCGTGGCCGCTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BE040108             [                                     TAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTGTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG TA CGACAAGGATCAGGAC ACCTTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGGTACTTCACTGAGGGTCACCCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAG ACAATGTTGAGCTTGA ATGCCTGCTTGATAG TCTTCGCC CCGCC GAAAATGTGCCCTTC CATGAG ATTATCCGGA TAGTTGATGCT GCAGAGACTT GTAATGAAGT GGCAGTGGC ATTTGTCCTG TGACTTTGAAAA TGAGAATG TCATGTTGA GGTTT CCTTGGC AAGGCT TTACCTTT AAAAACTTACA TTG TTCTGC CCCAAGT GACT TATCC TTTTGGCCCT TTCCTG GATTG AAATC C CCCCATTCt                                                                                                                                                                                                                                                                                             ]
[-] EMBL CF313831             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC ACGCCAGAAAATGTGCACATCACATGAGAATTATCGGGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCGGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCAAAAAAA                                                                                                                                                    ]
[+] EMBL C99227               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TAGTTCTTCGCCNACGCCAGAAAATGTGCACATCACATGAGAATTNTCGAGATTAGTTGATGCTGGCAGAGACTTGGT ATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGANGTAGACTAGTTCCTTTTTGGNCCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTCTCAACGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11117#0 GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTG CGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTT CGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTAC GCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTC GTGGCGAGGTACATGGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAG GTGGTTTTCATCACCAGCTCGGCGGCGATCGTGTGGTGCATGCGGCGCCACCCACAGGTG CGGCGCACGTACGACAAGGATCAGGACACATTCCGCCATGTGGTGCTCGTCGCCGCTGCC TTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTT TCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGA AATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTAC ATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCCTTGG ATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGT TGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCCACGCCAGAAAAT GTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAG TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC CCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC CAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTAA AAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAAT CGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA]

[+] EMBL BQ906077             [TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA]


>consensus_11117#1 TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGA AAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAA CAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAA TCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACA GTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGT CTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11117#0      GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTG 60
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      CGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTT 120
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      CGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTAC 180
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      GCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTC 240
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      GTGGCGAGGTACATGGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAG 300
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      GTGGTTTTCATCACCAGCTCGGCGGCGATCGTGTGGTGCATGCGGCGCCACCCACAGGTG 360
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      CGGCGCACGTACGACAAGGATCAGGACACATTCCGCCATGTGGTGCTCGTCGCCGCTGCC 420
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      TTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTT 480
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      TCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGA 540
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      AATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTAC 600
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      ATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCCTTGG 660
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      ATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGT 720
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      TGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCCACGCCAGAAAAT 780
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      GTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAG 840
consensus_11117#1      --------------------------------TGATGCTGGCAGAGACTTGGTAATGAAG 28
                                                       ****************************

consensus_11117#0      TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC 900
consensus_11117#1      TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC 88
                       ************************************************************

consensus_11117#0      CCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA 960
consensus_11117#1      CCTTGGCAA-GGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA 147
                       ********* **************************************************

consensus_11117#0      GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT 1020
consensus_11117#1      GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT 207
                       ************************************************************

consensus_11117#0      TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC 1080
consensus_11117#1      TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC 267
                       ************************************************************

consensus_11117#0      CAATGCACTCCAAACTACTC----------------CGAAATACCAGAAATATTGATTGT 1124
consensus_11117#1      CAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGT 327
                       *******************                 *** ********************

consensus_11117#0      GCTTCCTGGATCCTAAAAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCA 1184
consensus_11117#1      GCTTCCTGGA----AAAAAAA--------------------------------------- 344
                       **********    ******                                        

consensus_11117#0      ATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCT 1244
consensus_11117#1      ------------------------------------------------------------
                                                                                   

consensus_11117#0      GATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1292
consensus_11117#1      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)