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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1292 fasta sequence
[GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG-GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG-TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG-TA-CGACAAGGATCAGGAC-ACATTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCA-CCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC-ACGCCAGAAAATGTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG-TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTAAAAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF313830 [GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATGNGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACC ]
[+] EMBL CA758943 [ gtgccgcATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGT ]
[+] EMBL AK102648 [ TCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG TA CGACAAGGATCAGGAC ACATTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCA CCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC ACGCCAGAAAATGTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCT ]
[+] EMBL OSC477 [ TCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCC GNCCGNCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATNACCAGCTCGGCGGCGATCGTGTTGGTGCATGCGGCG CACCCACAGGT CNG GCANGTTACCGACAAGGATCAGGACAACTTTCCGCCATGTGGTGCTCGTGGCCGCTGCC ]
[+] EMBL BE040108 [ TAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTGTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG TA CGACAAGGATCAGGAC ACCTTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGGTACTTCACTGAGGGTCACCCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAG ACAATGTTGAGCTTGA ATGCCTGCTTGATAG TCTTCGCC CCGCC GAAAATGTGCCCTTC CATGAG ATTATCCGGA TAGTTGATGCT GCAGAGACTT GTAATGAAGT GGCAGTGGC ATTTGTCCTG TGACTTTGAAAA TGAGAATG TCATGTTGA GGTTT CCTTGGC AAGGCT TTACCTTT AAAAACTTACA TTG TTCTGC CCCAAGT GACT TATCC TTTTGGCCCT TTCCTG GATTG AAATC C CCCCATTCt ]
[-] EMBL CF313831 [ AGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC ACGCCAGAAAATGTGCACATCACATGAGAATTATCGGGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCGGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCAAAAAAA ]
[+] EMBL C99227 [ TAGTTCTTCGCCNACGCCAGAAAATGTGCACATCACATGAGAATTNTCGAGATTAGTTGATGCTGGCAGAGACTTGGT ATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGANGTAGACTAGTTCCTTTTTGGNCCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTCTCAACGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA]
[+] EMBL BQ906077 [TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11117#0 GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTG 60
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 CGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTT 120
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 CGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTAC 180
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 GCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTC 240
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 GTGGCGAGGTACATGGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAG 300
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 GTGGTTTTCATCACCAGCTCGGCGGCGATCGTGTGGTGCATGCGGCGCCACCCACAGGTG 360
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 CGGCGCACGTACGACAAGGATCAGGACACATTCCGCCATGTGGTGCTCGTCGCCGCTGCC 420
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 TTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTT 480
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 TCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGA 540
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 AATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTAC 600
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 ATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCCTTGG 660
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 ATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGT 720
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 TGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCCACGCCAGAAAAT 780
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 GTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAG 840
consensus_11117#1 --------------------------------TGATGCTGGCAGAGACTTGGTAATGAAG 28
****************************
consensus_11117#0 TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC 900
consensus_11117#1 TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC 88
************************************************************
consensus_11117#0 CCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA 960
consensus_11117#1 CCTTGGCAA-GGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA 147
********* **************************************************
consensus_11117#0 GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT 1020
consensus_11117#1 GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT 207
************************************************************
consensus_11117#0 TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC 1080
consensus_11117#1 TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC 267
************************************************************
consensus_11117#0 CAATGCACTCCAAACTACTC----------------CGAAATACCAGAAATATTGATTGT 1124
consensus_11117#1 CAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGT 327
******************* *** ********************
consensus_11117#0 GCTTCCTGGATCCTAAAAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCA 1184
consensus_11117#1 GCTTCCTGGA----AAAAAAA--------------------------------------- 344
********** ******
consensus_11117#0 ATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCT 1244
consensus_11117#1 ------------------------------------------------------------
consensus_11117#0 GATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1292
consensus_11117#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||