Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11119 cluster # 11119       Sequences # 8       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11119#0 length = 1173 sequences # 8  

consensusID : consensus_11119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1173
fasta sequence
                              [CGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT-CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT-GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT-GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT-CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG-CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT-CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC-AATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTTATCCCCTTGCAAAAAAAAAAAAAA]

[+] EMBL C27398               [CGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGNTNTNCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTG CGTNCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTNGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATNGGGAAGGCATGCATACTAACTTACANCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTNTTCCGGCAAG AAACAGCANCCTTCAGAAT AATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK068704             [                               CCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC AATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTT                          ]
[+] EMBL CF310350             [                               CCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTG   AGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACATGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCGCCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK061515             [                                CCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTG   AGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC AATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTT                        ]
[+] EMBL CA756579             [                                                      GCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCNCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BE039939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCTTAGAGGATATACTACTGAATGATGTGCATGTAAATAATTCAAATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGCTTTATCCCCTTGCAAAAAAAAAAAAAA]
[-] EMBL CF310349             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCGCCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAAaaaaa                                                                                                                                    ]
[+] EMBL AU100816             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTNCCACAACCNACAGTCATTGAGCCCTCTGTCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCNAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCANCCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC AATCTCCCTTTTGTTTCaaaaa                                                  ]


>consensus_11119#0 CGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCAC GCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTG GAGGAGGCCATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCT GCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGG AAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGC GAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACT GACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAAC AGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAA AATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACA GGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCA GGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTG TTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCA CTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGAC CAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCT TGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGAT AGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACA CGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCT GAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAA TGATGTGCATGTAAATATTTCAATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGA ACCCGTTTTATCCCCTTGCAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)