These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1173 fasta sequence [CGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT-CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT-GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT-GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT-CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG-CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT-CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC-AATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTTATCCCCTTGCAAAAAAAAAAAAAA] [+] EMBL C27398 [CGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGNTNTNCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTG CGTNCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTNGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATNGGGAAGGCATGCATACTAACTTACANCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTNTTCCGGCAAG AAACAGCANCCTTCAGAAT AATC ] [+] EMBL AK068704 [ CCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC AATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTT ] [+] EMBL CF310350 [ CCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTG AGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACATGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCGCCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGA ] [+] EMBL AK061515 [ CCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTG AGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCT GGGTAATATGCTAGAAGCGGATAGGCAGAGTAAT GGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCT CTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC AATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTT ] [+] EMBL CA756579 [ GCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGCAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGT CGGAGAGGGGGGACGTCNCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGA ] [+] EMBL BE039939 [ TGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCTTAGAGGATATACTACTGAATGATGTGCATGTAAATAATTCAAATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGCTTTATCCCCTTGCAAAAAAAAAAAAAA] [-] EMBL CF310349 [ GAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCGCCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTG CAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCAT CAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAAaaaaa ] [+] EMBL AU100816 [ CAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTNCCACAACCNACAGTCATTGAGCCCTCTGTCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCNAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCANCCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTC AATCTCCCTTTTGTTTCaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||